Wall clock time and date at job start Tue Mar 31 2020 04:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.46980 * 2 1 4 4 C 1.42897 * 114.00344 * 180.02562 * 3 2 1 5 5 H 1.09006 * 115.56096 * 4.30726 * 4 3 2 6 6 C 1.53073 * 117.49535 * 218.60261 * 4 3 2 7 7 C 1.52999 * 117.50320 * 149.99409 * 4 3 2 8 8 H 1.08999 * 117.49927 * 359.97438 * 7 4 3 9 9 C 1.50696 * 117.50308 * 214.97661 * 7 4 3 10 10 O 1.20833 * 119.99595 * 0.09274 * 9 7 4 11 11 O 1.34224 * 120.00302 * 180.08746 * 9 7 4 12 12 C 1.45206 * 117.00077 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.47021 * 180.02562 * 12 11 9 14 14 O 1.21282 * 120.00041 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00037 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99707 * 359.97438 * 15 13 12 17 17 C 1.52998 * 109.47055 * 90.00663 * 16 15 13 18 18 C 1.46500 * 120.00169 * 180.02562 * 15 13 12 19 19 C 1.50702 * 109.46904 * 89.99597 * 18 15 13 20 20 H 1.07993 * 120.00490 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99735 * 180.02562 * 19 18 15 22 22 N 1.31512 * 120.00050 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99825 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47522 * 89.99831 * 23 21 19 25 25 H 1.48508 * 109.46941 * 209.99577 * 23 21 19 26 26 H 1.48502 * 109.47592 * 329.99302 * 23 21 19 27 27 H 1.09009 * 109.46794 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47154 * 300.00094 * 1 2 3 29 29 H 1.08999 * 109.47111 * 60.00438 * 1 2 3 30 30 H 1.09002 * 109.47498 * 239.99960 * 2 1 3 31 31 H 1.08999 * 109.47111 * 119.99562 * 2 1 3 32 32 H 1.09000 * 117.51191 * 145.03689 * 6 4 3 33 33 H 1.08996 * 117.51151 * 359.97438 * 6 4 3 34 34 H 1.09000 * 109.47070 * 300.00162 * 12 11 9 35 35 H 1.09001 * 109.46626 * 60.00180 * 12 11 9 36 36 H 1.09002 * 109.46740 * 210.00435 * 16 15 13 37 37 H 1.09001 * 109.47266 * 330.00158 * 16 15 13 38 38 H 1.09005 * 109.46447 * 299.99424 * 17 16 15 39 39 H 1.09001 * 109.47495 * 59.99636 * 17 16 15 40 40 H 1.08998 * 109.46821 * 180.02562 * 17 16 15 41 41 H 1.08991 * 109.47410 * 209.99714 * 18 15 13 42 42 H 1.09007 * 109.47039 * 329.99988 * 18 15 13 43 43 H 0.97004 * 119.99848 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9772 0.5199 -0.0748 6 6 4.0518 2.5738 0.8465 7 6 4.0420 2.6877 -0.6793 8 1 3.3575 3.4089 -1.1258 9 6 5.3531 2.5043 -1.3992 10 8 5.8806 1.4175 -1.4260 11 8 5.9349 3.5480 -2.0106 12 6 7.1964 3.2977 -2.6847 13 6 7.6953 4.5760 -3.3076 14 8 7.0509 5.5973 -3.1950 15 7 8.8571 4.5841 -3.9908 16 6 9.6351 3.3503 -4.1274 17 6 9.1940 2.6063 -5.3894 18 6 9.3424 5.8269 -4.5959 19 6 10.2101 6.5617 -3.6069 20 1 10.3832 6.1445 -2.6259 21 6 10.7832 7.7667 -3.9544 22 7 10.5728 8.2745 -5.1492 23 14 11.8593 8.6771 -2.7288 24 1 13.2702 8.2427 -2.8904 25 1 11.7603 10.1386 -2.9730 26 1 11.4031 8.3739 -1.3485 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.0066 2.3661 1.3295 33 1 3.3737 3.2202 1.4036 34 1 7.9285 2.9357 -1.9629 35 1 7.0504 2.5472 -3.4617 36 1 10.6946 3.5953 -4.2016 37 1 9.4687 2.7175 -3.2556 38 1 8.1345 2.3614 -5.3151 39 1 9.3604 3.2392 -6.2612 40 1 9.7726 1.6882 -5.4908 41 1 9.9247 5.5939 -5.4873 42 1 8.4934 6.4533 -4.8700 43 1 10.9763 9.1221 -5.3938 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919435033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:08 Heat of formation + Delta-G solvation = -158.088581 kcal Electronic energy + Delta-G solvation = -23976.438742 eV Core-core repulsion = 20215.515443 eV Total energy + Delta-G solvation = -3760.923299 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.94551 -40.70455 -39.53516 -37.75391 -37.00843 -36.21175 -34.94705 -31.81804 -31.71844 -30.76078 -28.57265 -26.06437 -24.76355 -24.07622 -23.81476 -23.21374 -21.56569 -20.28205 -19.32919 -18.66782 -18.15096 -18.01652 -17.76349 -17.23956 -16.94435 -16.51388 -16.32364 -16.00123 -15.71078 -14.89415 -14.73769 -14.60964 -14.14890 -14.02133 -13.71593 -13.67290 -13.58136 -13.32357 -13.29450 -13.09167 -13.07494 -12.69028 -12.51695 -12.24275 -12.20286 -12.08195 -11.95061 -11.83386 -11.82272 -11.73180 -11.61136 -10.76877 -10.65033 -10.32814 -9.56411 -8.24020 -6.38534 0.86618 1.11216 1.36543 1.39749 1.49731 1.59601 2.19642 2.38659 2.56165 2.66884 3.05999 3.40008 3.48631 3.56353 3.79645 3.93060 3.95297 3.98069 4.13822 4.19212 4.29323 4.36822 4.42739 4.50706 4.57743 4.73425 4.84380 4.87682 4.93362 4.94575 5.01658 5.03636 5.15668 5.21071 5.28724 5.35066 5.53049 5.78410 6.03054 6.13753 6.47271 6.61748 6.70550 7.19588 7.35300 8.83459 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.002668 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.048681 B =10492.307064 C =11104.923395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.370 6.370 4 C 0.065 3.935 5 H 0.134 0.866 6 C -0.134 4.134 7 C -0.190 4.190 8 H 0.142 0.858 9 C 0.498 3.502 10 O -0.524 6.524 11 O -0.346 6.346 12 C 0.061 3.939 13 C 0.498 3.502 14 O -0.579 6.579 15 N -0.595 5.595 16 C 0.094 3.906 17 C -0.163 4.163 18 C 0.262 3.738 19 C -0.545 4.545 20 H 0.055 0.945 21 C 0.007 3.993 22 N -0.927 5.927 23 Si 0.969 3.031 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.273 1.273 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.098 0.902 41 H 0.030 0.970 42 H -0.001 1.001 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.980 -20.659 10.159 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.289 6.289 4 C 0.007 3.993 5 H 0.151 0.849 6 C -0.171 4.171 7 C -0.209 4.209 8 H 0.160 0.840 9 C 0.342 3.658 10 O -0.414 6.414 11 O -0.261 6.261 12 C -0.015 4.015 13 C 0.285 3.715 14 O -0.458 6.458 15 N -0.327 5.327 16 C -0.028 4.028 17 C -0.221 4.221 18 C 0.142 3.858 19 C -0.583 4.583 20 H 0.073 0.927 21 C -0.192 4.192 22 N -0.567 5.567 23 Si 0.793 3.207 24 H -0.187 1.187 25 H -0.207 1.207 26 H -0.198 1.198 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.048 0.952 42 H 0.017 0.983 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.204 -20.144 10.049 26.098 hybrid contribution 0.847 0.893 -0.117 1.237 sum -12.356 -19.251 9.932 24.938 Atomic orbital electron populations 1.21789 0.92493 1.03672 1.02844 1.22851 0.96471 0.81949 1.01561 1.87830 1.18083 1.29133 1.93815 1.22736 0.82572 0.93898 1.00121 0.84890 1.23698 1.03886 1.00988 0.88531 1.22294 0.93446 1.07143 0.98065 0.84012 1.22987 0.86032 0.81276 0.75459 1.90625 1.64910 1.26938 1.58913 1.86568 1.36217 1.39894 1.63447 1.22872 0.84501 0.95411 0.98737 1.20560 0.81576 0.89882 0.79444 1.90684 1.58035 1.36397 1.60723 1.48214 1.20584 1.11947 1.51954 1.21877 0.96860 0.84120 0.99967 1.22180 1.02054 1.00955 0.96960 1.18798 0.93084 0.80946 0.93021 1.21694 1.29988 1.06232 1.00394 0.92707 1.25872 0.98064 0.97875 0.97414 1.70049 1.45324 1.20145 1.21159 0.85392 0.79083 0.77514 0.78676 1.18699 1.20672 1.19813 0.88837 0.91852 0.92499 0.92482 0.91332 0.86085 0.85050 0.86187 0.85952 0.89917 0.88326 0.92478 0.93706 0.88305 0.95178 0.98318 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 71.98 0.74 -0.77 16 2 C 0.05 0.59 6.53 71.98 0.47 1.06 16 3 O -0.37 -6.77 10.60 -148.98 -1.58 -8.35 16 4 C 0.07 1.16 5.96 30.62 0.18 1.34 16 5 H 0.13 2.17 7.46 -2.38 -0.02 2.15 16 6 C -0.13 -2.18 10.19 30.62 0.31 -1.87 16 7 C -0.19 -4.15 6.25 -11.54 -0.07 -4.22 16 8 H 0.14 3.10 8.14 -2.39 -0.02 3.08 16 9 C 0.50 13.74 7.74 71.23 0.55 14.29 16 10 O -0.52 -14.97 16.01 21.94 0.35 -14.62 16 11 O -0.35 -11.66 9.75 -45.00 -0.44 -12.10 16 12 C 0.06 1.94 4.50 71.24 0.32 2.26 16 13 C 0.50 21.60 7.75 87.66 0.68 22.28 16 14 O -0.58 -31.56 16.08 15.76 0.25 -31.31 16 15 N -0.59 -25.31 2.46 -826.15 -2.03 -27.34 16 16 C 0.09 2.80 5.93 86.38 0.51 3.31 16 17 C -0.16 -3.98 10.24 71.98 0.74 -3.25 16 18 C 0.26 14.17 5.16 85.63 0.44 14.61 16 19 C -0.54 -31.42 9.39 25.60 0.24 -31.18 16 20 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 21 C 0.01 0.40 5.46 84.66 0.46 0.86 16 22 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 23 Si 0.97 44.99 29.54 68.60 2.03 47.01 16 24 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 27 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.12 3.21 7.39 -2.39 -0.02 3.19 16 35 H 0.12 3.19 7.18 -2.39 -0.02 3.17 16 36 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 37 H 0.10 2.28 6.44 -2.39 -0.02 2.27 16 38 H 0.06 1.32 7.22 -2.38 -0.02 1.30 16 39 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 42 H 0.00 -0.08 7.42 -2.38 -0.02 -0.10 16 43 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -77.60 371.20 5.44 -72.16 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.99 Total: 11.67 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 5.58 Total: 18.73 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -1.74 Total: -83.20 kcal Atomic # 8 Polarization: -64.96 SS G_CDS: -1.41 Total: -66.37 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -77.60 5.44 -72.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919435033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.932 kcal (2) G-P(sol) polarization free energy of solvation -77.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds