Wall clock time and date at job start Tue Mar 31 2020 04:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 H 1.09009 * 115.54684 * 355.58038 * 4 3 2 6 6 C 1.52996 * 117.50031 * 141.25013 * 4 3 2 7 7 C 1.52994 * 117.49962 * 209.91693 * 4 3 2 8 8 H 1.09003 * 117.49851 * 0.02562 * 7 4 3 9 9 C 1.50700 * 117.49926 * 145.02155 * 7 4 3 10 10 O 1.20824 * 120.00041 * 359.97438 * 9 7 4 11 11 O 1.34232 * 119.99822 * 179.97438 * 9 7 4 12 12 C 1.45202 * 117.00034 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.47332 * 179.97438 * 12 11 9 14 14 O 1.21281 * 119.99907 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00330 * 179.97438 * 13 12 11 16 16 C 1.46512 * 119.99567 * 0.02562 * 15 13 12 17 17 C 1.52999 * 109.46692 * 90.00058 * 16 15 13 18 18 C 1.46499 * 120.00614 * 180.02562 * 15 13 12 19 19 C 1.50699 * 109.46766 * 89.99795 * 18 15 13 20 20 H 1.08001 * 120.00497 * 0.02562 * 19 18 15 21 21 C 1.37879 * 119.99708 * 179.97438 * 19 18 15 22 22 N 1.31513 * 120.00094 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99903 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46798 * 60.00714 * 23 21 19 25 25 H 1.48502 * 109.46870 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47219 * 300.00336 * 23 21 19 27 27 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 32 32 H 1.09002 * 117.50129 * 214.98042 * 6 4 3 33 33 H 1.09000 * 117.49884 * 0.02562 * 6 4 3 34 34 H 1.08999 * 109.47262 * 300.00407 * 12 11 9 35 35 H 1.09007 * 109.46466 * 59.99998 * 12 11 9 36 36 H 1.09000 * 109.46587 * 209.99822 * 16 15 13 37 37 H 1.08998 * 109.47022 * 330.00030 * 16 15 13 38 38 H 1.08998 * 109.47410 * 60.00209 * 17 16 15 39 39 H 1.09007 * 109.46789 * 179.97438 * 17 16 15 40 40 H 1.08995 * 109.47031 * 299.99492 * 17 16 15 41 41 H 1.08994 * 109.47331 * 210.00359 * 18 15 13 42 42 H 1.09000 * 109.47009 * 330.00548 * 18 15 13 43 43 H 0.97006 * 120.00156 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9770 0.5198 0.0748 6 6 4.0511 2.5712 -0.8501 7 6 4.0424 2.6885 0.6762 8 1 3.3582 3.4103 1.1223 9 6 5.3541 2.5059 1.3954 10 8 5.8822 1.4195 1.4222 11 8 5.9357 3.5501 2.0062 12 6 7.1976 3.3008 2.6797 13 6 7.6963 4.5795 3.3020 14 8 7.0513 5.6004 3.1893 15 7 8.8583 4.5884 3.9845 16 6 9.6371 3.3550 4.1210 17 6 10.6193 3.2402 2.9536 18 6 9.3428 5.8314 4.5899 19 6 8.8084 5.9477 5.9942 20 1 8.1719 5.1730 6.3957 21 6 9.1329 7.0426 6.7668 22 7 9.9084 7.9856 6.2781 23 14 8.4711 7.1865 8.5077 24 1 8.9381 6.0288 9.3120 25 1 8.9621 8.4465 9.1213 26 1 6.9866 7.1988 8.4735 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 5.0055 2.3620 -1.3333 33 1 3.3726 3.2163 -1.4083 34 1 7.0526 2.5504 3.4569 35 1 7.9296 2.9390 1.9575 36 1 10.1899 3.3765 5.0602 37 1 8.9639 2.4977 4.1151 38 1 11.2925 4.0975 2.9595 39 1 11.1991 2.3228 3.0554 40 1 10.0665 3.2188 2.0145 41 1 10.4325 5.8225 4.6153 42 1 9.0001 6.6809 3.9993 43 1 10.1365 8.7562 6.8215 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919435035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:27 Heat of formation + Delta-G solvation = -158.048045 kcal Electronic energy + Delta-G solvation = -23979.244302 eV Core-core repulsion = 20218.322761 eV Total energy + Delta-G solvation = -3760.921541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.94500 -40.70470 -39.53536 -37.75382 -37.00770 -36.21033 -34.94773 -31.81841 -31.71906 -30.75967 -28.57200 -26.06424 -24.76092 -24.07636 -23.81773 -23.20843 -21.56516 -20.27901 -19.33359 -18.66204 -18.18306 -17.98070 -17.76418 -17.24293 -16.93869 -16.51640 -16.27666 -16.13949 -15.59195 -14.94195 -14.77337 -14.55858 -14.13439 -14.02829 -13.71699 -13.67961 -13.57537 -13.32266 -13.28994 -13.11148 -13.07181 -12.66894 -12.53076 -12.23741 -12.20292 -12.07594 -11.95153 -11.85728 -11.79937 -11.74516 -11.61119 -10.76837 -10.65212 -10.32914 -9.56429 -8.24061 -6.38643 0.86481 1.11730 1.36393 1.40887 1.47812 1.59509 2.19860 2.38512 2.56429 2.66782 3.05918 3.40047 3.48677 3.56270 3.79826 3.94381 3.94667 3.98013 4.13906 4.18871 4.29302 4.37049 4.42778 4.50384 4.58025 4.73502 4.84501 4.87865 4.93740 4.94672 5.01906 5.03268 5.15686 5.21084 5.28341 5.35527 5.52756 5.78327 6.03030 6.13729 6.47359 6.61766 6.70172 7.19556 7.35211 8.83190 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.020039 B = 0.002748 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.913776 B =10186.869953 C =10935.634726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.370 6.370 4 C 0.064 3.936 5 H 0.133 0.867 6 C -0.131 4.131 7 C -0.192 4.192 8 H 0.141 0.859 9 C 0.498 3.502 10 O -0.524 6.524 11 O -0.346 6.346 12 C 0.061 3.939 13 C 0.498 3.502 14 O -0.579 6.579 15 N -0.595 5.595 16 C 0.093 3.907 17 C -0.163 4.163 18 C 0.263 3.737 19 C -0.546 4.546 20 H 0.054 0.946 21 C 0.008 3.992 22 N -0.927 5.927 23 Si 0.968 3.032 24 H -0.259 1.259 25 H -0.278 1.278 26 H -0.279 1.279 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.044 0.956 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.031 0.969 42 H -0.001 1.001 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.712 -19.684 -14.016 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.289 6.289 4 C 0.005 3.995 5 H 0.151 0.849 6 C -0.168 4.168 7 C -0.211 4.211 8 H 0.158 0.842 9 C 0.343 3.657 10 O -0.414 6.414 11 O -0.261 6.261 12 C -0.015 4.015 13 C 0.285 3.715 14 O -0.458 6.458 15 N -0.327 5.327 16 C -0.028 4.028 17 C -0.221 4.221 18 C 0.142 3.858 19 C -0.585 4.585 20 H 0.072 0.928 21 C -0.191 4.191 22 N -0.566 5.566 23 Si 0.792 3.208 24 H -0.184 1.184 25 H -0.203 1.203 26 H -0.204 1.204 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.017 0.983 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.878 -19.145 -13.991 26.088 hybrid contribution 0.177 0.603 1.235 1.386 sum -10.701 -18.542 -12.756 24.920 Atomic orbital electron populations 1.21789 0.92520 1.03665 1.02838 1.22847 0.96457 0.81959 1.01552 1.87830 1.18136 1.29119 1.93830 1.22738 0.82561 0.93946 1.00229 0.84914 1.23702 1.03915 1.00823 0.88351 1.22304 0.93433 1.07152 0.98209 0.84154 1.22984 0.86040 0.81273 0.75443 1.90623 1.64905 1.26943 1.58912 1.86569 1.36266 1.39871 1.63433 1.22871 0.84595 0.95354 0.98699 1.20558 0.81528 0.89982 0.79394 1.90685 1.57132 1.36515 1.61515 1.48215 1.20941 1.12353 1.51186 1.21880 0.95117 0.85155 1.00694 1.22177 0.99253 1.03172 0.97509 1.18791 0.94018 0.81218 0.91777 1.21669 1.31012 1.06660 0.99117 0.92785 1.25856 0.95183 0.94902 1.03162 1.70038 1.37099 1.10535 1.38955 0.85471 0.78370 0.78106 0.78885 1.18374 1.20284 1.20442 0.92574 0.88846 0.91791 0.92578 0.91244 0.85887 0.85015 0.86416 0.85726 0.89983 0.88391 0.93692 0.88324 0.92359 0.95141 0.98288 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.05 0.61 6.53 71.98 0.47 1.08 16 3 O -0.37 -6.86 10.60 -148.98 -1.58 -8.44 16 4 C 0.06 1.13 5.95 30.59 0.18 1.31 16 5 H 0.13 2.17 7.46 -2.38 -0.02 2.15 16 6 C -0.13 -2.06 10.19 30.62 0.31 -1.75 16 7 C -0.19 -4.18 6.25 -11.51 -0.07 -4.25 16 8 H 0.14 3.12 8.14 -2.39 -0.02 3.10 16 9 C 0.50 13.74 7.74 71.24 0.55 14.29 16 10 O -0.52 -14.96 16.01 21.97 0.35 -14.61 16 11 O -0.35 -11.67 9.76 -45.08 -0.44 -12.11 16 12 C 0.06 1.94 4.50 71.24 0.32 2.26 16 13 C 0.50 21.60 7.75 87.66 0.68 22.28 16 14 O -0.58 -31.57 16.08 15.76 0.25 -31.32 16 15 N -0.59 -25.31 2.46 -826.15 -2.03 -27.34 16 16 C 0.09 2.79 5.93 86.38 0.51 3.30 16 17 C -0.16 -3.94 10.24 71.98 0.74 -3.20 16 18 C 0.26 14.20 5.16 85.63 0.44 14.64 16 19 C -0.55 -31.58 9.39 25.60 0.24 -31.34 16 20 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 21 C 0.01 0.48 5.46 84.66 0.46 0.94 16 22 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 23 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.12 3.20 7.39 -2.39 -0.02 3.18 16 35 H 0.13 3.18 7.18 -2.38 -0.02 3.17 16 36 H 0.08 2.56 8.07 -2.39 -0.02 2.54 16 37 H 0.10 2.28 6.44 -2.39 -0.02 2.27 16 38 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.06 1.32 7.22 -2.39 -0.02 1.30 16 41 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 42 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 43 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -77.75 371.20 5.44 -72.31 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.99 Total: 11.52 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 5.58 Total: 18.74 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -1.74 Total: -83.21 kcal Atomic # 8 Polarization: -65.06 SS G_CDS: -1.41 Total: -66.47 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -77.75 5.44 -72.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919435035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.738 kcal (2) G-P(sol) polarization free energy of solvation -77.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds