Wall clock time and date at job start Tue Mar 31 2020 04:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46904 * 2 1 4 4 C 1.42904 * 114.00233 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.55913 * 4.30662 * 4 3 2 6 6 C 1.53002 * 117.49776 * 218.62040 * 4 3 2 7 7 C 1.52996 * 60.00016 * 252.50806 * 6 4 3 8 8 H 1.08997 * 117.49890 * 252.48797 * 7 6 4 9 9 C 1.50699 * 117.49812 * 107.48922 * 7 6 4 10 10 O 1.20834 * 120.00287 * 291.39095 * 9 7 6 11 11 O 1.34230 * 119.99854 * 111.39455 * 9 7 6 12 12 C 1.45200 * 116.99861 * 179.97438 * 11 9 7 13 13 C 1.50703 * 109.47224 * 179.97438 * 12 11 9 14 14 O 1.21287 * 119.99553 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00320 * 180.02562 * 13 12 11 16 16 C 1.46497 * 119.99637 * 359.97438 * 15 13 12 17 17 C 1.53007 * 109.47034 * 269.99986 * 16 15 13 18 18 C 1.46499 * 119.99751 * 180.02562 * 15 13 12 19 19 C 1.50701 * 109.47260 * 89.99944 * 18 15 13 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 15 21 21 C 1.37871 * 119.99694 * 180.27562 * 19 18 15 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 18 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 18 24 24 H 1.48504 * 109.47209 * 89.99886 * 23 21 19 25 25 H 1.48501 * 109.47358 * 209.99377 * 23 21 19 26 26 H 1.48496 * 109.47341 * 329.99989 * 23 21 19 27 27 H 1.08996 * 109.47227 * 60.00532 * 1 2 3 28 28 H 1.09006 * 109.46454 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46949 * 299.99821 * 1 2 3 30 30 H 1.08996 * 109.47225 * 240.00490 * 2 1 3 31 31 H 1.08996 * 109.47227 * 119.99468 * 2 1 3 32 32 H 1.09000 * 117.49587 * 145.01678 * 6 4 3 33 33 H 1.09005 * 117.51620 * 359.97438 * 6 4 3 34 34 H 1.09003 * 109.47552 * 59.99830 * 12 11 9 35 35 H 1.09001 * 109.47593 * 299.99522 * 12 11 9 36 36 H 1.08999 * 109.47518 * 29.99982 * 16 15 13 37 37 H 1.08995 * 109.46848 * 150.00638 * 16 15 13 38 38 H 1.09002 * 109.46479 * 60.00355 * 17 16 15 39 39 H 1.08998 * 109.47319 * 180.02562 * 17 16 15 40 40 H 1.08997 * 109.47466 * 300.00465 * 17 16 15 41 41 H 1.09000 * 109.47197 * 329.98950 * 18 15 13 42 42 H 1.09007 * 109.46342 * 209.99522 * 18 15 13 43 43 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4603 -0.0006 5 1 3.9771 0.5200 -0.0748 6 6 4.0516 2.5730 0.8464 7 6 4.0420 2.6878 -0.6792 8 1 4.9904 2.5555 -1.1999 9 6 3.0955 3.6853 -1.2959 10 8 1.9028 3.4993 -1.2426 11 8 3.5775 4.7803 -1.9046 12 6 2.6078 5.6972 -2.4766 13 6 3.3283 6.8584 -3.1118 14 8 4.5398 6.9085 -3.0846 15 7 2.6264 7.8418 -3.7093 16 6 1.1631 7.7814 -3.7416 17 6 0.7109 7.0421 -5.0026 18 6 3.3270 8.9703 -4.3272 19 6 3.6226 8.6492 -5.7696 20 1 3.3193 7.6992 -6.1844 21 6 4.2856 9.5655 -6.5579 22 7 4.6552 10.7222 -6.0527 23 14 4.6589 9.1643 -8.3437 24 1 3.5320 9.6166 -9.1987 25 1 5.9041 9.8597 -8.7575 26 1 4.8373 7.6979 -8.4948 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 5.0063 2.3647 1.3294 33 1 3.3736 3.2194 1.4039 34 1 1.9481 6.0653 -1.6908 35 1 2.0183 5.1778 -3.2322 36 1 0.8016 7.2514 -2.8604 37 1 0.7578 8.7932 -3.7488 38 1 1.1162 6.0302 -4.9954 39 1 -0.3779 6.9975 -5.0269 40 1 1.0723 7.5720 -5.8838 41 1 4.2615 9.1524 -3.7965 42 1 2.6997 9.8602 -4.2742 43 1 5.1220 11.3667 -6.6072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919435036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:36 Heat of formation + Delta-G solvation = -153.944581 kcal Electronic energy + Delta-G solvation = -24437.354941 eV Core-core repulsion = 20676.611340 eV Total energy + Delta-G solvation = -3760.743602 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.81646 -40.67705 -39.38718 -37.53808 -36.98960 -36.16628 -34.89327 -31.73650 -31.64231 -30.76007 -28.63315 -26.02149 -24.56964 -24.16495 -23.75013 -23.12882 -21.45505 -20.26686 -19.25217 -18.74698 -18.11291 -17.89520 -17.61084 -17.13361 -16.58296 -16.40813 -16.22629 -16.02552 -15.64833 -14.86701 -14.65213 -14.60148 -14.21310 -13.96132 -13.73311 -13.66092 -13.56869 -13.29703 -13.25375 -13.04333 -12.99924 -12.74612 -12.54169 -12.24199 -12.13753 -11.94816 -11.89587 -11.76620 -11.64927 -11.59238 -11.42783 -10.74838 -10.62938 -10.14797 -9.56949 -8.22498 -6.35521 1.04767 1.25799 1.36258 1.39134 1.49195 1.59809 2.31481 2.43290 2.52913 2.75521 3.07652 3.42284 3.62472 3.68627 3.81997 3.92801 3.96515 4.12986 4.15281 4.22816 4.37973 4.41503 4.47781 4.53601 4.56006 4.78895 4.86277 4.89314 4.95240 4.98132 5.02417 5.05549 5.19578 5.28805 5.31812 5.45041 5.56588 5.79530 6.05255 6.33416 6.55696 6.72600 6.72849 7.20237 7.37042 8.85314 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.023756 B = 0.002933 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.363817 B = 9542.868348 C = 9853.461141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.365 6.365 4 C 0.059 3.941 5 H 0.163 0.837 6 C -0.142 4.142 7 C -0.194 4.194 8 H 0.159 0.841 9 C 0.481 3.519 10 O -0.508 6.508 11 O -0.352 6.352 12 C 0.064 3.936 13 C 0.500 3.500 14 O -0.577 6.577 15 N -0.595 5.595 16 C 0.098 3.902 17 C -0.166 4.166 18 C 0.260 3.740 19 C -0.536 4.536 20 H 0.055 0.945 21 C 0.008 3.992 22 N -0.928 5.928 23 Si 0.965 3.035 24 H -0.263 1.263 25 H -0.281 1.281 26 H -0.274 1.274 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.094 0.906 40 H 0.046 0.954 41 H 0.000 1.000 42 H 0.031 0.969 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.045 -21.551 13.336 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.284 6.284 4 C 0.000 4.000 5 H 0.180 0.820 6 C -0.179 4.179 7 C -0.213 4.213 8 H 0.177 0.823 9 C 0.325 3.675 10 O -0.395 6.395 11 O -0.268 6.268 12 C -0.013 4.013 13 C 0.288 3.712 14 O -0.457 6.457 15 N -0.328 5.328 16 C -0.023 4.023 17 C -0.224 4.224 18 C 0.140 3.860 19 C -0.575 4.575 20 H 0.074 0.926 21 C -0.191 4.191 22 N -0.568 5.568 23 Si 0.790 3.210 24 H -0.188 1.188 25 H -0.207 1.207 26 H -0.199 1.199 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.170 0.830 33 H 0.111 0.889 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.065 0.935 41 H 0.018 0.982 42 H 0.049 0.951 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.870 -21.206 13.306 26.242 hybrid contribution 0.437 0.481 -1.242 1.401 sum -7.433 -20.725 12.064 25.106 Atomic orbital electron populations 1.21750 0.93698 1.03187 1.02148 1.22778 0.95932 0.82589 1.01428 1.88107 1.18562 1.28057 1.93626 1.23096 0.83128 0.93996 0.99762 0.82005 1.23669 1.04643 1.01061 0.88532 1.22534 1.01487 0.98136 0.99173 0.82327 1.23295 0.88749 0.80261 0.75234 1.90688 1.17694 1.75384 1.55763 1.86568 1.40777 1.32712 1.66767 1.22754 0.90042 0.88634 0.99892 1.20518 0.87521 0.83935 0.79267 1.90672 1.16026 1.78222 1.60785 1.48220 1.08180 1.22343 1.54014 1.21859 0.77777 1.03090 0.99622 1.22180 1.02428 0.99685 0.98069 1.18860 0.91619 0.83626 0.91927 1.21676 1.37549 1.02113 0.96165 0.92637 1.25825 0.95100 0.94790 1.03395 1.70043 1.40419 1.08165 1.38204 0.85451 0.78110 0.78150 0.79325 1.18829 1.20673 1.19900 0.93536 0.88765 0.92545 0.92349 0.91027 0.82963 0.88866 0.86357 0.87096 0.88187 0.89376 0.93437 0.88691 0.93512 0.98185 0.95101 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.05 0.69 6.53 71.98 0.47 1.16 16 3 O -0.37 -7.96 8.48 -127.83 -1.08 -9.04 16 4 C 0.06 0.92 6.40 30.59 0.20 1.12 16 5 H 0.16 1.22 7.93 -2.39 -0.02 1.20 16 6 C -0.14 -2.12 10.18 30.59 0.31 -1.81 16 7 C -0.19 -3.99 6.30 -11.54 -0.07 -4.06 16 8 H 0.16 2.64 8.14 -2.39 -0.02 2.62 16 9 C 0.48 14.51 7.74 71.24 0.55 15.07 16 10 O -0.51 -16.99 14.68 28.97 0.43 -16.56 16 11 O -0.35 -12.51 9.75 -45.06 -0.44 -12.95 16 12 C 0.06 2.16 4.50 71.24 0.32 2.48 16 13 C 0.50 22.28 7.75 87.66 0.68 22.96 16 14 O -0.58 -31.84 16.08 15.75 0.25 -31.59 16 15 N -0.60 -25.86 2.46 -826.13 -2.03 -27.89 16 16 C 0.10 3.06 5.98 86.38 0.52 3.57 16 17 C -0.17 -4.88 10.24 71.98 0.74 -4.14 16 18 C 0.26 14.14 5.20 85.63 0.45 14.59 16 19 C -0.54 -30.95 8.92 25.60 0.23 -30.72 16 20 H 0.06 3.17 7.42 -2.91 -0.02 3.15 16 21 C 0.01 0.45 5.46 84.65 0.46 0.91 16 22 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 23 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 26 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.12 3.36 7.39 -2.39 -0.02 3.34 16 35 H 0.11 3.39 7.18 -2.39 -0.02 3.38 16 36 H 0.10 2.38 6.44 -2.39 -0.02 2.36 16 37 H 0.09 2.61 7.89 -2.39 -0.02 2.59 16 38 H 0.05 1.39 7.22 -2.39 -0.02 1.37 16 39 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 1.68 7.25 -2.39 -0.02 1.66 16 41 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 42 H 0.03 1.68 7.89 -2.38 -0.02 1.66 16 43 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -81.78 366.71 6.02 -75.76 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.99 Total: 11.30 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 5.59 Total: 19.72 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.74 Total: -83.96 kcal Atomic # 8 Polarization: -69.30 SS G_CDS: -0.85 Total: -70.14 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -81.78 6.02 -75.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919435036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.180 kcal (2) G-P(sol) polarization free energy of solvation -81.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds