Wall clock time and date at job start Tue Mar 31 2020 04:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47201 * 2 1 4 4 C 1.34236 * 117.00064 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99786 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99952 * 180.28224 * 4 3 2 7 7 H 1.09002 * 110.36483 * 336.82216 * 6 4 3 8 8 C 1.54667 * 110.40761 * 214.48119 * 6 4 3 9 9 N 1.48656 * 104.65476 * 217.53034 * 8 6 4 10 10 C 1.46902 * 110.99850 * 158.49924 * 9 8 6 11 11 C 1.52998 * 109.47262 * 69.87673 * 10 9 8 12 12 H 1.09007 * 109.46950 * 59.99566 * 11 10 9 13 13 O 1.42899 * 109.46913 * 300.00134 * 11 10 9 14 14 C 1.50695 * 109.47284 * 180.02562 * 11 10 9 15 15 H 1.07999 * 120.00000 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99804 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00541 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99907 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47175 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47393 * 119.99550 * 18 16 14 21 21 H 1.48502 * 109.46737 * 239.99339 * 18 16 14 22 22 C 1.48830 * 104.41585 * 38.83211 * 9 8 6 23 23 C 1.53209 * 110.41264 * 99.29942 * 6 4 3 24 24 C 1.52883 * 115.86574 * 348.94702 * 23 6 4 25 25 O 1.44411 * 85.14706 * 220.66524 * 24 23 6 26 26 C 1.44413 * 93.53918 * 23.37383 * 25 24 23 27 27 H 1.09007 * 109.47255 * 59.99812 * 1 2 3 28 28 H 1.09000 * 109.47121 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47297 * 299.99993 * 1 2 3 30 30 H 1.09009 * 109.46880 * 240.00259 * 2 1 3 31 31 H 1.08996 * 109.47245 * 120.00681 * 2 1 3 32 32 H 1.09000 * 110.40034 * 336.33022 * 8 6 4 33 33 H 1.09004 * 110.40406 * 98.73753 * 8 6 4 34 34 H 1.09004 * 109.46976 * 189.87646 * 10 9 8 35 35 H 1.09001 * 109.47048 * 309.87566 * 10 9 8 36 36 H 0.96699 * 114.00265 * 299.99727 * 13 11 10 37 37 H 0.96999 * 120.00534 * 180.02562 * 17 16 14 38 38 H 1.08999 * 110.46883 * 80.25027 * 22 9 8 39 39 H 1.08999 * 110.46332 * 202.84300 * 22 9 8 40 40 H 1.08996 * 113.92931 * 334.71573 * 24 23 6 41 41 H 1.09003 * 113.92363 * 106.61714 * 24 23 6 42 42 H 1.08998 * 113.92230 * 222.58156 * 26 25 24 43 43 H 1.09004 * 113.92367 * 90.68073 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9207 2.9373 0.0059 7 1 3.1972 3.6489 -0.3920 8 6 5.2302 2.9831 -0.8160 9 7 6.1136 3.9130 -0.0644 10 6 7.5252 3.6861 -0.4018 11 6 7.7873 4.1483 -1.8366 12 1 7.5591 5.2106 -1.9236 13 8 6.9580 3.4079 -2.7345 14 6 9.2353 3.9150 -2.1829 15 1 9.9018 3.4802 -1.4529 16 6 9.7090 4.2567 -3.4318 17 7 8.8973 4.7857 -4.3211 18 14 11.5038 3.9668 -3.8614 19 1 12.2006 3.3646 -2.6966 20 1 11.5924 3.0452 -5.0224 21 1 12.1453 5.2609 -4.2067 22 6 5.8501 3.5992 1.3663 23 6 4.3409 3.3353 1.4244 24 6 3.8705 2.4071 2.5445 25 8 3.6195 3.6239 3.2806 26 6 3.5002 4.4274 2.0867 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.6799 1.9917 -0.8697 33 1 5.0372 3.3684 -1.8172 34 1 8.1578 4.2509 0.2831 35 1 7.7534 2.6238 -0.3148 36 1 7.1072 2.4528 -2.7106 37 1 9.2305 5.0257 -5.1998 38 1 6.4044 2.7111 1.6701 39 1 6.1132 4.4481 1.9974 40 1 2.9697 1.8432 2.3024 41 1 4.6623 1.7894 2.9685 42 1 4.0018 5.3929 2.1518 43 1 2.4832 4.4975 1.7008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930597117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:30 Heat of formation + Delta-G solvation = -136.307953 kcal Electronic energy + Delta-G solvation = -25708.059036 eV Core-core repulsion = 21948.080216 eV Total energy + Delta-G solvation = -3759.978820 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67966 -40.05048 -37.87956 -36.65847 -35.25985 -32.37947 -32.12428 -31.57417 -29.24671 -28.31646 -26.86258 -25.28799 -24.70293 -23.21972 -22.19532 -20.77425 -20.35276 -18.96682 -17.91673 -17.22699 -16.91368 -16.57282 -16.06358 -15.97022 -15.34812 -14.72208 -14.62202 -14.45112 -14.18924 -13.97660 -13.78381 -13.53864 -13.13868 -12.95450 -12.45944 -12.35664 -12.19335 -12.02433 -11.84373 -11.70152 -11.50930 -11.13362 -10.99916 -10.91455 -10.79824 -10.73441 -10.56281 -10.49592 -10.31679 -10.05977 -9.75673 -9.04254 -8.58398 -8.22982 -7.88875 -6.01615 -4.19782 2.07502 2.46614 3.26461 3.34876 3.38023 3.45725 3.92709 4.27860 4.35606 4.55053 4.62751 4.68110 4.71022 4.81185 4.95040 5.00560 5.08053 5.23269 5.25919 5.37663 5.42725 5.47073 5.50021 5.65314 5.69664 5.70902 5.83345 5.91052 5.94845 5.98370 6.14800 6.22631 6.25318 6.31754 6.56211 6.83390 7.21583 7.37746 7.66182 7.75304 7.90256 8.18336 8.83263 9.35477 9.56908 11.02523 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.003830 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.675409 B = 7308.749897 C = 8183.850772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.473 3.527 5 O -0.500 6.500 6 C -0.089 4.089 7 H 0.114 0.886 8 C 0.053 3.947 9 N -0.498 5.498 10 C 0.020 3.980 11 C 0.237 3.763 12 H 0.065 0.935 13 O -0.561 6.561 14 C -0.573 4.573 15 H 0.055 0.945 16 C 0.080 3.920 17 N -0.857 5.857 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.053 3.947 23 C -0.114 4.114 24 C 0.044 3.956 25 O -0.377 6.377 26 C 0.056 3.944 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.028 0.972 36 H 0.341 0.659 37 H 0.260 0.740 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.618 -6.161 10.832 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.276 6.276 4 C 0.315 3.685 5 O -0.387 6.387 6 C -0.109 4.109 7 H 0.132 0.868 8 C -0.075 4.075 9 N -0.222 5.222 10 C -0.107 4.107 11 C 0.179 3.821 12 H 0.082 0.918 13 O -0.364 6.364 14 C -0.611 4.611 15 H 0.073 0.927 16 C -0.126 4.126 17 N -0.493 5.493 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.075 4.075 23 C -0.115 4.115 24 C -0.034 4.034 25 O -0.296 6.296 26 C -0.021 4.021 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.184 0.816 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.770 -5.166 10.657 19.722 hybrid contribution 1.535 -1.837 -0.149 2.398 sum -14.236 -7.002 10.508 19.029 Atomic orbital electron populations 1.21805 0.92592 1.02934 1.03594 1.23036 0.95406 0.80378 1.02667 1.86547 1.24689 1.32316 1.84041 1.23550 0.80428 0.92578 0.71948 1.90670 1.60331 1.42884 1.44805 1.21943 1.00093 0.90759 0.98125 0.86752 1.23378 0.88701 0.96777 0.98619 1.65605 1.07158 1.48135 1.01290 1.23278 0.86048 0.98863 1.02536 1.19367 0.88939 0.92950 0.80850 0.91762 1.86576 1.63601 1.20003 1.66203 1.21645 0.95414 1.44651 0.99416 0.92678 1.25016 0.97269 0.93933 0.96376 1.70085 1.34370 1.39682 1.05133 0.86621 0.85360 0.77975 0.78441 1.19757 1.20920 1.20864 1.22844 0.90758 1.00721 0.93191 1.23686 0.98497 0.96788 0.92544 1.23998 0.99870 0.89427 0.90065 1.89731 1.93463 1.19392 1.26996 1.23983 0.99166 0.95973 0.82943 0.91339 0.90284 0.91500 0.91060 0.91348 0.92389 0.86746 0.90964 0.95405 0.81575 0.93049 0.93199 0.89279 0.90450 0.88717 0.87959 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.29 37.16 0.38 -0.64 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.36 -4.28 9.98 -39.27 -0.39 -4.68 16 4 C 0.47 6.52 4.97 36.00 0.18 6.70 16 5 O -0.50 -8.14 15.61 -18.75 -0.29 -8.43 16 6 C -0.09 -1.20 3.31 -90.79 -0.30 -1.51 16 7 H 0.11 1.37 7.95 -51.93 -0.41 0.96 16 8 C 0.05 0.89 4.55 -1.97 -0.01 0.88 16 9 N -0.50 -8.72 5.37 -230.14 -1.24 -9.95 16 10 C 0.02 0.41 4.60 -3.82 -0.02 0.40 16 11 C 0.24 5.84 3.08 -27.89 -0.09 5.76 16 12 H 0.06 1.78 8.14 -51.93 -0.42 1.36 16 13 O -0.56 -13.77 9.71 -35.23 -0.34 -14.11 16 14 C -0.57 -15.51 8.76 -34.44 -0.30 -15.81 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 17 N -0.86 -25.05 12.84 55.43 0.71 -24.34 16 18 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.05 0.77 5.91 -2.59 -0.02 0.76 16 23 C -0.11 -1.46 1.19 -154.34 -0.18 -1.64 16 24 C 0.04 0.53 7.72 37.07 0.29 0.82 16 25 O -0.38 -4.95 12.46 -35.23 -0.44 -5.38 16 26 C 0.06 0.63 8.36 37.09 0.31 0.94 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.69 8.13 -51.92 -0.42 0.27 16 31 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.06 1.05 6.61 -51.93 -0.34 0.71 16 33 H 0.11 2.11 6.59 -51.93 -0.34 1.76 16 34 H 0.07 1.43 8.13 -51.93 -0.42 1.01 16 35 H 0.03 0.57 7.88 -51.93 -0.41 0.16 16 36 H 0.34 7.68 8.88 45.56 0.40 8.09 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.05 0.75 7.91 -51.93 -0.41 0.34 16 39 H 0.09 1.23 7.88 -51.93 -0.41 0.82 16 40 H 0.08 0.90 6.63 -51.93 -0.34 0.56 16 41 H 0.09 1.12 8.06 -51.93 -0.42 0.70 16 42 H 0.10 1.07 8.01 -51.93 -0.42 0.66 16 43 H 0.09 0.82 8.12 -51.93 -0.42 0.40 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -31.22 348.69 -7.40 -38.62 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.02 Total: 7.40 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 0.38 Total: -0.43 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: -0.52 Total: -34.29 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.47 Total: -32.60 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.22 -7.40 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930597117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.685 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds