Wall clock time and date at job start Tue Mar 31 2020 04:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47201 * 2 1 4 4 C 1.34236 * 117.00064 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99786 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99952 * 180.28224 * 4 3 2 7 7 H 1.09002 * 110.36483 * 336.82216 * 6 4 3 8 8 C 1.54667 * 110.40761 * 214.48119 * 6 4 3 9 9 N 1.48656 * 104.65476 * 217.53034 * 8 6 4 10 10 C 1.46902 * 110.99850 * 158.49924 * 9 8 6 11 11 C 1.52998 * 109.47262 * 69.87673 * 10 9 8 12 12 H 1.09007 * 109.46950 * 59.99566 * 11 10 9 13 13 O 1.42899 * 109.46913 * 300.00134 * 11 10 9 14 14 C 1.50695 * 109.47284 * 180.02562 * 11 10 9 15 15 H 1.07999 * 120.00000 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99804 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00541 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99907 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47175 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47393 * 119.99550 * 18 16 14 21 21 H 1.48502 * 109.46737 * 239.99339 * 18 16 14 22 22 C 1.48830 * 104.41585 * 38.83211 * 9 8 6 23 23 C 1.53209 * 110.41264 * 99.29942 * 6 4 3 24 24 C 1.52883 * 115.86574 * 348.94702 * 23 6 4 25 25 O 1.44411 * 85.14706 * 220.66524 * 24 23 6 26 26 C 1.44413 * 93.53918 * 23.37383 * 25 24 23 27 27 H 1.09007 * 109.47255 * 59.99812 * 1 2 3 28 28 H 1.09000 * 109.47121 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47297 * 299.99993 * 1 2 3 30 30 H 1.09009 * 109.46880 * 240.00259 * 2 1 3 31 31 H 1.08996 * 109.47245 * 120.00681 * 2 1 3 32 32 H 1.09000 * 110.40034 * 336.33022 * 8 6 4 33 33 H 1.09004 * 110.40406 * 98.73753 * 8 6 4 34 34 H 1.09004 * 109.46976 * 189.87646 * 10 9 8 35 35 H 1.09001 * 109.47048 * 309.87566 * 10 9 8 36 36 H 0.96699 * 114.00265 * 299.99727 * 13 11 10 37 37 H 0.96999 * 120.00534 * 180.02562 * 17 16 14 38 38 H 1.08999 * 110.46883 * 80.25027 * 22 9 8 39 39 H 1.08999 * 110.46332 * 202.84300 * 22 9 8 40 40 H 1.08996 * 113.92931 * 334.71573 * 24 23 6 41 41 H 1.09003 * 113.92363 * 106.61714 * 24 23 6 42 42 H 1.08998 * 113.92230 * 222.58156 * 26 25 24 43 43 H 1.09004 * 113.92367 * 90.68073 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9207 2.9373 0.0059 7 1 3.1972 3.6489 -0.3920 8 6 5.2302 2.9831 -0.8160 9 7 6.1136 3.9130 -0.0644 10 6 7.5252 3.6861 -0.4018 11 6 7.7873 4.1483 -1.8366 12 1 7.5591 5.2106 -1.9236 13 8 6.9580 3.4079 -2.7345 14 6 9.2353 3.9150 -2.1829 15 1 9.9018 3.4802 -1.4529 16 6 9.7090 4.2567 -3.4318 17 7 8.8973 4.7857 -4.3211 18 14 11.5038 3.9668 -3.8614 19 1 12.2006 3.3646 -2.6966 20 1 11.5924 3.0452 -5.0224 21 1 12.1453 5.2609 -4.2067 22 6 5.8501 3.5992 1.3663 23 6 4.3409 3.3353 1.4244 24 6 3.8705 2.4071 2.5445 25 8 3.6195 3.6239 3.2806 26 6 3.5002 4.4274 2.0867 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.6799 1.9917 -0.8697 33 1 5.0372 3.3684 -1.8172 34 1 8.1578 4.2509 0.2831 35 1 7.7534 2.6238 -0.3148 36 1 7.1072 2.4528 -2.7106 37 1 9.2305 5.0257 -5.1998 38 1 6.4044 2.7111 1.6701 39 1 6.1132 4.4481 1.9974 40 1 2.9697 1.8432 2.3024 41 1 4.6623 1.7894 2.9685 42 1 4.0018 5.3929 2.1518 43 1 2.4832 4.4975 1.7008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930597117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:29 Heat of formation + Delta-G solvation = -160.035190 kcal Electronic energy + Delta-G solvation = -25709.087926 eV Core-core repulsion = 21948.080216 eV Total energy + Delta-G solvation = -3761.007710 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.74328 -41.06888 -39.26809 -37.81115 -36.94279 -34.25504 -33.53366 -32.47614 -30.39770 -30.06400 -27.78708 -26.99482 -25.78349 -24.38380 -23.41157 -22.12635 -21.84260 -20.02223 -19.10075 -18.92669 -18.07802 -17.69778 -17.07965 -16.99905 -16.66903 -16.43010 -16.30049 -15.80215 -15.75205 -15.19199 -14.96029 -14.71905 -14.41270 -14.02471 -13.73919 -13.61866 -13.36829 -13.03942 -13.01179 -12.93106 -12.81699 -12.79521 -12.57142 -12.53670 -12.30225 -12.04115 -11.90855 -11.57053 -11.53627 -11.38543 -11.04347 -10.75118 -10.70425 -10.09322 -9.42259 -8.13250 -6.38623 0.98024 1.39501 1.41220 1.49302 1.52857 2.37965 2.49653 2.90212 3.12726 3.18375 3.27689 3.47417 3.79518 3.91118 3.99505 4.06371 4.10084 4.19098 4.25120 4.32639 4.34453 4.38904 4.45102 4.52011 4.63301 4.71668 4.79327 4.83718 4.85093 4.92283 4.94588 4.98426 5.04245 5.11656 5.14935 5.38672 5.62670 5.66598 5.86369 5.95764 6.16460 6.61186 6.73330 7.32610 7.51500 8.91177 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.003830 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.675409 B = 7308.749897 C = 8183.850772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.355 6.355 4 C 0.479 3.521 5 O -0.529 6.529 6 C -0.082 4.082 7 H 0.134 0.866 8 C 0.058 3.942 9 N -0.506 5.506 10 C 0.038 3.962 11 C 0.239 3.761 12 H 0.028 0.972 13 O -0.569 6.569 14 C -0.587 4.587 15 H 0.057 0.943 16 C 0.028 3.972 17 N -0.896 5.896 18 Si 0.958 3.042 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.278 1.278 22 C 0.054 3.946 23 C -0.115 4.115 24 C 0.049 3.951 25 O -0.391 6.391 26 C 0.062 3.938 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.025 0.975 36 H 0.348 0.652 37 H 0.261 0.739 38 H 0.046 0.954 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.492 -6.586 11.971 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 O -0.272 6.272 4 C 0.322 3.678 5 O -0.418 6.418 6 C -0.102 4.102 7 H 0.152 0.848 8 C -0.070 4.070 9 N -0.229 5.229 10 C -0.090 4.090 11 C 0.181 3.819 12 H 0.046 0.954 13 O -0.372 6.372 14 C -0.625 4.625 15 H 0.075 0.925 16 C -0.175 4.175 17 N -0.533 5.533 18 Si 0.783 3.217 19 H -0.189 1.189 20 H -0.206 1.206 21 H -0.204 1.204 22 C -0.073 4.073 23 C -0.116 4.116 24 C -0.028 4.028 25 O -0.310 6.310 26 C -0.014 4.014 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.043 0.957 36 H 0.192 0.808 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.129 0.871 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.666 -5.591 11.815 21.181 hybrid contribution 1.728 -1.730 -0.501 2.496 sum -14.939 -7.321 11.313 20.118 Atomic orbital electron populations 1.21826 0.90139 1.04435 1.03852 1.23351 0.97293 0.79080 1.02639 1.86540 1.23326 1.33926 1.83420 1.23493 0.80937 0.92150 0.71207 1.90663 1.61132 1.43740 1.46292 1.21850 0.98819 0.91400 0.98140 0.84832 1.23152 0.90261 0.95357 0.98257 1.65499 1.05502 1.48577 1.03351 1.22867 0.88094 0.98384 0.99649 1.19151 0.88041 0.91253 0.83433 0.95393 1.86533 1.63446 1.20575 1.66679 1.22032 0.96693 1.44207 0.99614 0.92479 1.25852 1.01654 0.93628 0.96341 1.70212 1.36511 1.40996 1.05575 0.85530 0.79994 0.77913 0.78228 1.18924 1.20600 1.20406 1.22878 0.92323 1.01027 0.91114 1.23700 0.97347 0.98308 0.92231 1.24008 1.00193 0.89296 0.89339 1.89725 1.93597 1.19839 1.27852 1.24160 1.00074 0.95559 0.81616 0.91316 0.88166 0.90957 0.91608 0.90993 0.94082 0.88884 0.90590 0.95658 0.80762 0.92996 0.93556 0.88197 0.89652 0.88616 0.87119 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.29 71.98 0.74 -0.86 16 2 C 0.05 0.87 6.19 71.98 0.45 1.31 16 3 O -0.36 -7.89 9.98 -51.47 -0.51 -8.41 16 4 C 0.48 12.73 4.97 71.23 0.35 13.08 16 5 O -0.53 -17.06 15.61 21.95 0.34 -16.71 16 6 C -0.08 -2.13 3.31 -10.90 -0.04 -2.16 16 7 H 0.13 2.94 7.95 -2.39 -0.02 2.92 16 8 C 0.06 1.95 4.55 86.53 0.39 2.34 16 9 N -0.51 -17.67 5.37 -882.02 -4.74 -22.41 16 10 C 0.04 1.57 4.60 86.30 0.40 1.97 16 11 C 0.24 12.12 3.08 29.85 0.09 12.22 16 12 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 13 O -0.57 -28.79 9.71 -148.98 -1.45 -30.23 16 14 C -0.59 -32.17 8.76 25.60 0.22 -31.94 16 15 H 0.06 3.04 7.74 -2.91 -0.02 3.01 16 16 C 0.03 1.56 5.40 84.65 0.46 2.02 16 17 N -0.90 -53.30 12.84 21.45 0.28 -53.02 16 18 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C 0.05 1.53 5.91 86.04 0.51 2.03 16 23 C -0.11 -2.74 1.19 -52.07 -0.06 -2.80 16 24 C 0.05 1.09 7.72 71.93 0.56 1.65 16 25 O -0.39 -9.31 12.46 -148.98 -1.86 -11.16 16 26 C 0.06 1.22 8.36 71.94 0.60 1.82 16 27 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 1.23 8.13 -2.38 -0.02 1.21 16 31 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 32 H 0.04 1.52 6.61 -2.39 -0.02 1.51 16 33 H 0.09 3.52 6.59 -2.39 -0.02 3.51 16 34 H 0.08 3.01 8.13 -2.39 -0.02 2.99 16 35 H 0.03 1.04 7.88 -2.39 -0.02 1.02 16 36 H 0.35 16.22 8.88 -74.06 -0.66 15.56 16 37 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.05 1.35 7.91 -2.39 -0.02 1.33 16 39 H 0.10 2.60 7.88 -2.39 -0.02 2.58 16 40 H 0.09 1.79 6.63 -2.39 -0.02 1.78 16 41 H 0.10 2.12 8.06 -2.39 -0.02 2.10 16 42 H 0.11 2.02 8.01 -2.39 -0.02 2.00 16 43 H 0.11 1.68 8.12 -2.38 -0.02 1.66 16 Total: -1.00 -67.20 348.69 -0.88 -68.08 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.35 Total: 27.77 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 4.67 Total: 0.67 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -4.46 Total: -75.43 kcal Atomic # 8 Polarization: -63.04 SS G_CDS: -3.47 Total: -66.52 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -67.20 -0.88 -68.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930597117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.953 kcal (2) G-P(sol) polarization free energy of solvation -67.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds