Wall clock time and date at job start Tue Mar 31 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46967 * 2 1 4 4 O 1.21280 * 120.00206 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99367 * 179.97438 * 3 2 1 6 6 C 1.46502 * 119.99638 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47108 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00068 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99994 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99839 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.46385 * 324.99563 * 10 9 7 12 12 C 1.53039 * 109.46285 * 84.97486 * 10 9 7 13 13 C 1.53194 * 109.31305 * 58.65067 * 12 10 9 14 14 N 1.46928 * 108.77432 * 54.63924 * 13 12 10 15 15 C 1.36936 * 120.62842 * 126.37204 * 14 13 12 16 16 H 1.08004 * 119.99968 * 332.79861 * 15 14 13 17 17 C 1.38813 * 120.00130 * 152.80108 * 15 14 13 18 18 N 1.31615 * 120.00346 * 159.75531 * 17 15 14 19 19 Si 1.86801 * 119.99527 * 339.75670 * 17 15 14 20 20 H 1.48504 * 109.46878 * 94.90319 * 19 17 15 21 21 H 1.48497 * 109.46837 * 214.89731 * 19 17 15 22 22 H 1.48492 * 109.47537 * 334.90150 * 19 17 15 23 23 C 1.46917 * 118.73779 * 306.39063 * 14 13 12 24 24 C 1.53045 * 109.45922 * 205.02438 * 10 9 7 25 25 H 1.08999 * 109.49745 * 181.39325 * 24 10 9 26 26 O 1.42899 * 109.49422 * 61.29809 * 24 10 9 27 27 H 1.09002 * 109.46792 * 59.99787 * 1 2 3 28 28 H 1.08997 * 109.47094 * 300.00184 * 1 2 3 29 29 H 1.08993 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46587 * 119.99705 * 2 1 3 31 31 H 1.08997 * 109.47094 * 239.99816 * 2 1 3 32 32 H 0.96997 * 119.99980 * 0.02562 * 5 3 2 33 33 H 1.09001 * 109.47064 * 300.00533 * 6 5 3 34 34 H 1.09008 * 109.46794 * 59.99931 * 6 5 3 35 35 H 0.97003 * 119.99736 * 359.97438 * 9 7 6 36 36 H 1.08997 * 109.50064 * 178.60266 * 12 10 9 37 37 H 1.09005 * 109.49525 * 298.66847 * 12 10 9 38 38 H 1.08999 * 109.58739 * 174.42584 * 13 12 10 39 39 H 1.09000 * 109.59027 * 294.85004 * 13 12 10 40 40 H 0.97001 * 120.00433 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.58949 * 173.39976 * 23 14 13 42 42 H 1.09007 * 109.58817 * 293.81808 * 23 14 13 43 43 H 0.96704 * 114.00026 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8459 3.0482 0.0000 7 6 5.3528 3.0482 0.0001 8 8 5.9592 1.9979 0.0001 9 7 6.0268 4.2154 0.0001 10 6 7.4917 4.2153 -0.0003 11 1 7.8550 3.3734 0.5889 12 6 8.0012 4.0893 -1.4379 13 6 7.4606 5.2556 -2.2711 14 7 7.8238 6.5168 -1.6107 15 6 8.4879 7.4979 -2.2974 16 1 9.1236 7.2379 -3.1310 17 6 8.3442 8.8266 -1.9223 18 7 9.2456 9.7142 -2.2853 19 14 6.8712 9.3548 -0.9021 20 1 7.2401 9.3554 0.5365 21 1 6.4535 10.7213 -1.3064 22 1 5.7494 8.4079 -1.1250 23 6 7.4613 6.7052 -0.1995 24 6 8.0018 5.5227 0.6102 25 1 9.0915 5.5340 0.5876 26 8 7.5511 5.6254 1.9624 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 3.9877 0.9297 0.0005 33 1 3.4829 3.5616 -0.8905 34 1 3.4820 3.5626 0.8895 35 1 5.5417 5.0555 -0.0003 36 1 9.0908 4.1141 -1.4412 37 1 7.6574 3.1468 -1.8643 38 1 7.8989 5.2261 -3.2687 39 1 6.3757 5.1806 -2.3442 40 1 9.1450 10.6428 -2.0235 41 1 7.9000 7.6321 0.1700 42 1 6.3763 6.7484 -0.1035 43 1 7.8377 6.4319 2.4124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099738024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:15 Heat of formation + Delta-G solvation = -100.830227 kcal Electronic energy + Delta-G solvation = -25190.566759 eV Core-core repulsion = 21464.419119 eV Total energy + Delta-G solvation = -3726.147639 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.46050 -39.62793 -38.22579 -35.61842 -34.72008 -34.28381 -33.06143 -32.18186 -30.58184 -29.43428 -27.99220 -25.39857 -24.18971 -23.04964 -21.82235 -20.99527 -20.56385 -19.10722 -18.04776 -17.15572 -16.98689 -16.44356 -16.38320 -16.22037 -15.52605 -15.32597 -15.05356 -14.43531 -14.25682 -14.00283 -13.88295 -13.47293 -13.33534 -13.06565 -12.71670 -12.57690 -12.44402 -12.36781 -12.02621 -11.89814 -11.63360 -11.44449 -11.18310 -11.07409 -10.58879 -10.42835 -10.12793 -10.05345 -9.86256 -9.73780 -9.58050 -9.36915 -8.95654 -8.75579 -7.15549 -6.08631 -3.46787 2.41781 2.55907 2.70800 3.16548 3.36348 3.38239 3.39748 4.23046 4.37842 4.47290 4.64826 4.80117 4.80395 4.81664 5.06976 5.15606 5.17978 5.21635 5.30970 5.39116 5.47702 5.51690 5.58754 5.64956 5.68145 5.89013 5.92919 6.06405 6.12565 6.20467 6.25735 6.37071 6.49122 6.54084 6.72173 7.28362 7.49083 7.70386 7.86364 8.00617 8.14244 8.18780 8.77069 9.55742 9.90653 11.06881 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.021901 B = 0.003540 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.176589 B = 7908.575696 C = 8279.857015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.512 3.488 4 O -0.543 6.543 5 N -0.718 5.718 6 C 0.098 3.902 7 C 0.511 3.489 8 O -0.548 6.548 9 N -0.702 5.702 10 C 0.165 3.835 11 H 0.087 0.913 12 C -0.146 4.146 13 C 0.148 3.852 14 N -0.600 5.600 15 C -0.264 4.264 16 H 0.089 0.911 17 C 0.024 3.976 18 N -0.904 5.904 19 Si 0.883 3.117 20 H -0.290 1.290 21 H -0.301 1.301 22 H -0.270 1.270 23 C 0.098 3.902 24 C 0.076 3.924 25 H 0.074 0.926 26 O -0.571 6.571 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.412 0.588 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.405 0.595 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.264 0.736 41 H 0.078 0.922 42 H 0.031 0.969 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.190 -16.287 6.235 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.298 3.702 4 O -0.420 6.420 5 N -0.374 5.374 6 C -0.030 4.030 7 C 0.296 3.704 8 O -0.426 6.426 9 N -0.353 5.353 10 C 0.061 3.939 11 H 0.105 0.895 12 C -0.186 4.186 13 C 0.022 3.978 14 N -0.325 5.325 15 C -0.392 4.392 16 H 0.106 0.894 17 C -0.176 4.176 18 N -0.546 5.546 19 Si 0.714 3.286 20 H -0.218 1.218 21 H -0.229 1.229 22 H -0.195 1.195 23 C -0.029 4.029 24 C 0.015 3.985 25 H 0.092 0.908 26 O -0.376 6.376 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.250 0.750 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.241 0.759 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.504 -16.747 6.062 20.678 hybrid contribution -0.300 1.242 0.705 1.459 sum -10.804 -15.506 6.767 20.074 Atomic orbital electron populations 1.21534 0.92916 1.01598 1.03426 1.21615 0.98641 0.93408 1.04592 1.20829 0.81584 0.92137 0.75614 1.90717 1.55314 1.46557 1.49429 1.45766 1.07641 1.08281 1.75688 1.21068 0.91489 0.85498 1.04937 1.20372 0.89458 0.84321 0.76204 1.90661 1.69885 1.31189 1.50896 1.45915 1.07728 1.08361 1.73312 1.20882 0.78814 0.97431 0.96810 0.89546 1.22413 1.01728 0.99973 0.94465 1.20953 0.96709 0.84619 0.95496 1.44284 1.67479 1.15801 1.04955 1.18932 1.20647 0.85080 1.14582 0.89358 1.25308 0.97830 0.95715 0.98709 1.69823 1.33377 1.03040 1.48394 0.86961 0.85241 0.77483 0.78955 1.21807 1.22922 1.19506 1.22016 0.97595 0.97140 0.86101 1.22765 0.98634 0.95777 0.81348 0.90768 1.86433 1.79175 1.46378 1.25629 0.91929 0.91964 0.92035 0.88772 0.88727 0.75025 0.88313 0.88411 0.75926 0.90492 0.91234 0.91386 0.95764 0.92595 0.90424 0.95161 0.77471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.20 37.16 0.34 -0.69 16 2 C -0.14 -1.03 6.42 -27.88 -0.18 -1.21 16 3 C 0.51 5.69 7.83 -10.98 -0.09 5.60 16 4 O -0.54 -8.07 15.98 5.56 0.09 -7.98 16 5 N -0.72 -7.70 5.53 -61.47 -0.34 -8.04 16 6 C 0.10 1.13 6.15 -5.19 -0.03 1.10 16 7 C 0.51 6.95 7.86 -10.99 -0.09 6.86 16 8 O -0.55 -8.61 15.33 5.56 0.09 -8.52 16 9 N -0.70 -9.96 4.15 -53.77 -0.22 -10.18 16 10 C 0.17 2.55 2.47 -67.89 -0.17 2.39 16 11 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 12 C -0.15 -2.28 5.77 -26.61 -0.15 -2.44 16 13 C 0.15 2.69 6.26 -3.71 -0.02 2.66 16 14 N -0.60 -12.99 2.77 -172.34 -0.48 -13.47 16 15 C -0.26 -6.93 10.04 -15.06 -0.15 -7.08 16 16 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 17 C 0.02 0.65 5.24 -17.43 -0.09 0.56 16 18 N -0.90 -26.55 13.97 55.49 0.78 -25.77 16 19 Si 0.88 21.02 24.35 -169.99 -4.14 16.88 16 20 H -0.29 -6.56 6.70 56.52 0.38 -6.18 16 21 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 22 H -0.27 -6.24 6.45 56.52 0.36 -5.87 16 23 C 0.10 1.90 3.52 -3.73 -0.01 1.89 16 24 C 0.08 1.23 3.36 -26.62 -0.09 1.14 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 26 O -0.57 -8.47 13.21 -35.23 -0.47 -8.93 16 27 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 28 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.41 4.05 7.44 -40.82 -0.30 3.75 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.10 1.09 8.14 -51.92 -0.42 0.66 16 35 H 0.40 5.63 6.87 -40.82 -0.28 5.35 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 39 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.08 1.65 4.49 -51.93 -0.23 1.42 16 42 H 0.03 0.58 5.48 -51.93 -0.28 0.30 16 43 H 0.38 4.38 9.08 45.56 0.41 4.79 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -32.68 343.98 -5.98 -38.66 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.74 Total: 11.40 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -0.73 Total: 10.78 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.27 Total: -57.46 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.29 Total: -25.44 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.88 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.68 -5.98 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099738024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.173 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds