Wall clock time and date at job start Tue Mar 31 2020 05:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00338 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47624 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47420 * 180.02562 * 15 14 13 17 17 C 1.34781 * 120.00136 * 180.02562 * 16 15 14 18 18 O 1.21282 * 119.99943 * 359.97438 * 17 16 15 19 19 C 1.50693 * 120.00124 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47408 * 179.97438 * 19 17 16 21 21 H 1.08999 * 110.45536 * 54.29259 * 20 19 17 22 22 C 1.54502 * 110.51463 * 176.90380 * 20 19 17 23 23 C 1.54477 * 104.06614 * 118.64330 * 22 20 19 24 24 O 1.44424 * 104.80253 * 23.98063 * 23 22 20 25 25 C 1.44651 * 105.36438 * 319.56430 * 24 23 22 26 26 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 29 29 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 30 30 H 1.00900 * 111.00047 * 303.95165 * 13 12 10 31 31 H 1.09004 * 109.46960 * 299.99557 * 14 13 12 32 32 H 1.09004 * 109.47385 * 59.99759 * 14 13 12 33 33 H 1.09004 * 109.46677 * 299.99836 * 15 14 13 34 34 H 1.08996 * 109.47435 * 59.99578 * 15 14 13 35 35 H 0.97000 * 119.99825 * 359.97438 * 16 15 14 36 36 H 1.09004 * 109.46924 * 299.99417 * 19 17 16 37 37 H 1.08996 * 109.47311 * 59.99234 * 19 17 16 38 38 H 1.09002 * 110.51245 * 237.29151 * 22 20 19 39 39 H 1.09004 * 110.51054 * 359.97438 * 22 20 19 40 40 H 1.08997 * 110.37356 * 142.81226 * 23 22 20 41 41 H 1.09005 * 110.37265 * 265.03284 * 23 22 20 42 42 H 1.09001 * 110.33726 * 281.59375 * 25 24 23 43 43 H 1.09002 * 110.50304 * 159.19121 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 1.4980 -7.2708 0.0252 15 6 2.5228 -8.4068 0.0300 16 7 1.8244 -9.6946 0.0362 17 6 2.5292 -10.8434 0.0417 18 8 3.7416 -10.8111 0.0411 19 6 1.8108 -12.1681 0.0474 20 6 2.8356 -13.3041 0.0524 21 1 3.5333 -13.1841 0.8812 22 6 2.1254 -14.6737 0.1365 23 6 2.5374 -15.3910 -1.1681 24 8 3.7783 -14.7635 -1.5581 25 6 3.5952 -13.3536 -1.2918 26 1 -0.4850 0.8400 -0.0004 27 1 0.3533 -2.3906 0.0005 28 1 0.6167 -4.9162 0.9030 29 1 0.6174 -4.9252 -0.8769 30 1 2.8331 -5.9162 -0.7633 31 1 0.8734 -7.3407 0.9158 32 1 0.8728 -7.3498 -0.8643 33 1 3.1471 -8.3367 -0.8608 34 1 3.1484 -8.3281 0.9191 35 1 0.8548 -9.7204 0.0370 36 1 1.1856 -12.2385 0.9376 37 1 1.1862 -12.2466 -0.8423 38 1 2.4737 -15.2318 1.0056 39 1 1.0441 -14.5414 0.1750 40 1 2.6911 -16.4542 -0.9843 41 1 1.7785 -15.2455 -1.9370 42 1 3.0007 -12.8931 -2.0808 43 1 4.5597 -12.8537 -1.2013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125118208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:07 Heat of formation + Delta-G solvation = -126.698759 kcal Electronic energy + Delta-G solvation = -23020.501674 eV Core-core repulsion = 19293.232291 eV Total energy + Delta-G solvation = -3727.269383 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.45764 -39.18803 -38.33811 -36.37217 -34.41363 -33.90963 -33.75667 -31.26537 -30.43782 -29.47493 -27.35283 -25.77946 -23.92678 -23.26866 -22.19328 -21.21411 -20.34923 -19.30593 -17.95007 -17.64731 -16.62797 -16.48683 -16.21825 -16.02058 -15.75553 -15.62250 -15.14754 -14.63289 -14.40798 -14.17020 -13.86629 -13.71425 -13.47633 -13.20471 -13.15114 -12.66586 -12.35802 -12.05975 -11.93849 -11.65234 -11.54747 -11.48547 -11.45779 -11.27568 -11.04010 -11.02665 -10.45420 -10.23512 -10.13846 -10.09940 -9.52211 -9.31052 -8.53357 -8.16278 -7.98794 -6.43875 -3.84819 2.37011 2.80293 3.19216 3.25002 3.29700 3.62139 3.87427 4.03649 4.12731 4.27636 4.38232 4.41954 4.54236 4.64462 4.79772 4.89522 4.93785 4.97418 5.05941 5.14572 5.19488 5.23689 5.29469 5.34129 5.37519 5.50507 5.64349 5.68928 5.79174 5.82082 5.86875 5.91175 6.13924 6.22908 6.43839 7.05732 7.20950 7.53019 7.53438 7.95082 8.03602 8.58545 9.15513 9.51273 10.02654 10.73710 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.061205 B = 0.001725 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.372522 B =16225.462024 C =16471.615170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.582 6.582 12 C 0.053 3.947 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.119 3.881 16 N -0.730 5.730 17 C 0.509 3.491 18 O -0.535 6.535 19 C -0.133 4.133 20 C -0.107 4.107 21 H 0.093 0.907 22 C -0.153 4.153 23 C 0.043 3.957 24 O -0.378 6.378 25 C 0.054 3.946 26 H 0.272 0.728 27 H 0.392 0.608 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.353 0.647 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.400 0.600 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 -27.339 -0.894 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.081 4.081 15 C -0.005 4.005 16 N -0.382 5.382 17 C 0.295 3.705 18 O -0.411 6.411 19 C -0.173 4.173 20 C -0.126 4.126 21 H 0.112 0.888 22 C -0.190 4.190 23 C -0.034 4.034 24 O -0.297 6.297 25 C -0.023 4.023 26 H 0.082 0.918 27 H 0.225 0.775 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.172 0.828 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.234 0.766 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.897 -27.208 -0.309 27.364 hybrid contribution -1.439 1.046 -0.763 1.935 sum -4.336 -26.163 -1.072 26.541 Atomic orbital electron populations 1.69603 1.05944 1.28297 1.50481 1.25266 0.95646 0.99748 0.97228 0.85902 0.78752 0.80362 0.79112 1.19904 1.20970 1.19851 1.19673 0.93393 0.82224 1.47754 0.87921 1.41849 1.09187 1.04581 1.64302 1.19770 0.88400 0.84693 0.84687 1.90536 1.13721 1.87012 1.55351 1.21668 0.94209 0.90823 1.01309 1.59924 1.18876 0.99480 1.51634 1.22078 0.95551 0.89449 1.00973 1.21293 0.94973 0.80745 1.03465 1.45951 1.10353 1.06048 1.75854 1.20644 0.88127 0.85626 0.76087 1.90735 1.13898 1.87639 1.48835 1.21780 0.99052 0.91736 1.04765 1.22298 0.96921 0.92994 1.00361 0.88822 1.23037 1.01112 0.95669 0.99228 1.23400 0.87007 0.98165 0.94854 1.89181 1.34646 1.19787 1.86105 1.23560 1.01949 0.82390 0.94359 0.91807 0.77454 0.89464 0.93726 0.82778 0.90488 0.94966 0.91336 0.90157 0.76638 0.88316 0.88636 0.90324 0.90229 0.89194 0.92368 0.92593 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 10 C 0.44 10.27 7.82 -10.99 -0.09 10.18 16 11 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 13 N -0.67 -10.33 6.12 -115.06 -0.70 -11.03 16 14 C 0.05 0.54 5.80 -3.83 -0.02 0.51 16 15 C 0.12 1.28 5.93 -4.04 -0.02 1.26 16 16 N -0.73 -5.92 5.56 -60.30 -0.33 -6.25 16 17 C 0.51 4.78 7.63 -10.99 -0.08 4.70 16 18 O -0.53 -7.30 14.91 5.56 0.08 -7.21 16 19 C -0.13 -0.75 4.91 -27.89 -0.14 -0.89 16 20 C -0.11 -0.77 2.71 -89.06 -0.24 -1.01 16 21 H 0.09 0.81 7.96 -51.93 -0.41 0.40 16 22 C -0.15 -0.80 6.74 -25.17 -0.17 -0.97 16 23 C 0.04 0.27 7.64 37.93 0.29 0.56 16 24 O -0.38 -3.85 11.65 -35.23 -0.41 -4.26 16 25 C 0.05 0.49 6.30 37.93 0.24 0.73 16 26 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.35 5.69 8.43 -39.29 -0.33 5.36 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.40 2.00 8.47 -40.82 -0.35 1.66 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.37 8.01 -51.93 -0.42 -0.05 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.27 7.73 -51.93 -0.40 -0.13 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.47 7.78 -51.93 -0.40 0.06 16 43 H 0.10 1.10 7.71 -51.93 -0.40 0.70 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -34.28 360.95 -7.48 -41.75 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.77 Total: 11.18 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -0.51 Total: 7.94 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.37 Total: -55.06 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.24 Total: -27.21 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.28 -7.48 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125118208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.946 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds