Wall clock time and date at job start Tue Mar 31 2020 05:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00338 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47624 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47420 * 180.02562 * 15 14 13 17 17 C 1.34781 * 120.00136 * 180.02562 * 16 15 14 18 18 O 1.21282 * 119.99943 * 359.97438 * 17 16 15 19 19 C 1.50693 * 120.00124 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47408 * 179.97438 * 19 17 16 21 21 H 1.08999 * 110.45536 * 54.29259 * 20 19 17 22 22 C 1.54502 * 110.51463 * 176.90380 * 20 19 17 23 23 C 1.54477 * 104.06614 * 118.64330 * 22 20 19 24 24 O 1.44424 * 104.80253 * 23.98063 * 23 22 20 25 25 C 1.44651 * 105.36438 * 319.56430 * 24 23 22 26 26 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 29 29 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 30 30 H 1.00900 * 111.00047 * 303.95165 * 13 12 10 31 31 H 1.09004 * 109.46960 * 299.99557 * 14 13 12 32 32 H 1.09004 * 109.47385 * 59.99759 * 14 13 12 33 33 H 1.09004 * 109.46677 * 299.99836 * 15 14 13 34 34 H 1.08996 * 109.47435 * 59.99578 * 15 14 13 35 35 H 0.97000 * 119.99825 * 359.97438 * 16 15 14 36 36 H 1.09004 * 109.46924 * 299.99417 * 19 17 16 37 37 H 1.08996 * 109.47311 * 59.99234 * 19 17 16 38 38 H 1.09002 * 110.51245 * 237.29151 * 22 20 19 39 39 H 1.09004 * 110.51054 * 359.97438 * 22 20 19 40 40 H 1.08997 * 110.37356 * 142.81226 * 23 22 20 41 41 H 1.09005 * 110.37265 * 265.03284 * 23 22 20 42 42 H 1.09001 * 110.33726 * 281.59375 * 25 24 23 43 43 H 1.09002 * 110.50304 * 159.19121 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 1.4980 -7.2708 0.0252 15 6 2.5228 -8.4068 0.0300 16 7 1.8244 -9.6946 0.0362 17 6 2.5292 -10.8434 0.0417 18 8 3.7416 -10.8111 0.0411 19 6 1.8108 -12.1681 0.0474 20 6 2.8356 -13.3041 0.0524 21 1 3.5333 -13.1841 0.8812 22 6 2.1254 -14.6737 0.1365 23 6 2.5374 -15.3910 -1.1681 24 8 3.7783 -14.7635 -1.5581 25 6 3.5952 -13.3536 -1.2918 26 1 -0.4850 0.8400 -0.0004 27 1 0.3533 -2.3906 0.0005 28 1 0.6167 -4.9162 0.9030 29 1 0.6174 -4.9252 -0.8769 30 1 2.8331 -5.9162 -0.7633 31 1 0.8734 -7.3407 0.9158 32 1 0.8728 -7.3498 -0.8643 33 1 3.1471 -8.3367 -0.8608 34 1 3.1484 -8.3281 0.9191 35 1 0.8548 -9.7204 0.0370 36 1 1.1856 -12.2385 0.9376 37 1 1.1862 -12.2466 -0.8423 38 1 2.4737 -15.2318 1.0056 39 1 1.0441 -14.5414 0.1750 40 1 2.6911 -16.4542 -0.9843 41 1 1.7785 -15.2455 -1.9370 42 1 3.0007 -12.8931 -2.0808 43 1 4.5597 -12.8537 -1.2013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125118208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:07 Heat of formation + Delta-G solvation = -155.895733 kcal Electronic energy + Delta-G solvation = -23021.767750 eV Core-core repulsion = 19293.232291 eV Total energy + Delta-G solvation = -3728.535459 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14552 -40.18181 -39.83615 -37.48259 -35.99976 -35.18572 -34.50899 -33.27288 -31.14049 -30.34618 -28.30522 -27.16729 -25.46559 -23.86288 -23.10095 -21.88533 -21.10134 -20.96211 -19.92334 -18.41451 -17.73896 -17.31424 -17.25533 -16.99565 -16.72124 -16.47278 -16.32083 -15.97267 -15.83165 -15.38341 -15.07692 -14.84186 -14.44961 -14.28685 -14.01086 -13.70696 -13.51356 -13.31686 -13.08257 -12.92909 -12.61909 -12.51755 -12.43858 -12.37673 -12.12808 -12.12157 -11.87374 -11.52132 -11.50946 -10.88533 -10.76081 -10.37111 -10.11198 -10.02124 -9.38591 -8.47136 -5.95874 1.39806 1.42085 1.52706 1.66319 2.04292 2.06495 2.30740 3.01107 3.08260 3.20270 3.50332 3.61390 3.77734 3.86992 3.89069 4.06178 4.13242 4.23689 4.31524 4.34297 4.46460 4.48366 4.51317 4.60488 4.61863 4.77621 4.87266 4.88258 4.91107 4.94739 4.97863 5.15748 5.25897 5.40115 5.41358 5.84657 5.86932 6.06949 6.31516 6.57692 6.59965 7.12246 7.29306 7.55719 8.11510 8.69824 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.061205 B = 0.001725 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.372522 B =16225.462024 C =16471.615170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.571 5.571 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.069 3.931 13 N -0.688 5.688 14 C 0.059 3.941 15 C 0.127 3.873 16 N -0.715 5.715 17 C 0.502 3.498 18 O -0.586 6.586 19 C -0.121 4.121 20 C -0.107 4.107 21 H 0.070 0.930 22 C -0.143 4.143 23 C 0.033 3.967 24 O -0.410 6.410 25 C 0.052 3.948 26 H 0.278 0.722 27 H 0.398 0.602 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.345 0.655 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.419 0.581 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.599 -28.331 -0.788 29.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.064 4.064 13 N -0.321 5.321 14 C -0.070 4.070 15 C 0.002 3.998 16 N -0.369 5.369 17 C 0.290 3.710 18 O -0.466 6.466 19 C -0.161 4.161 20 C -0.126 4.126 21 H 0.089 0.911 22 C -0.180 4.180 23 C -0.043 4.043 24 O -0.330 6.330 25 C -0.025 4.025 26 H 0.088 0.912 27 H 0.232 0.768 28 H 0.128 0.872 29 H 0.091 0.909 30 H 0.164 0.836 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.257 0.743 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.099 0.901 39 H 0.128 0.872 40 H 0.118 0.882 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.828 -28.225 -0.197 28.821 hybrid contribution -0.523 1.272 -0.806 1.594 sum -6.351 -26.953 -1.003 27.709 Atomic orbital electron populations 1.69656 1.06732 1.29387 1.50112 1.26012 0.96561 1.02321 0.96188 0.85001 0.77784 0.76734 0.78885 1.19782 1.19354 1.19859 1.19635 0.92717 0.84147 1.50195 0.90458 1.41910 1.09365 1.04638 1.64960 1.20957 0.88278 0.86337 0.82269 1.90505 1.16063 1.87998 1.56722 1.21522 0.93725 0.87497 1.03617 1.59895 1.19437 1.01016 1.51752 1.22078 0.95261 0.86780 1.02891 1.21008 0.94972 0.82285 1.01537 1.45783 1.11272 1.04748 1.75056 1.21432 0.87710 0.87043 0.74771 1.90729 1.16388 1.88371 1.51138 1.21811 0.98485 0.88201 1.07572 1.22247 0.97088 0.95108 0.98147 0.91133 1.23016 1.02615 0.93821 0.98572 1.23672 0.86005 0.98668 0.95937 1.89141 1.36991 1.20302 1.86579 1.23515 1.00926 0.82075 0.95978 0.91246 0.76820 0.87244 0.90896 0.83635 0.88778 0.92442 0.92921 0.92725 0.74325 0.85162 0.85757 0.90101 0.87203 0.88204 0.90874 0.91830 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 3 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.57 -28.93 5.29 -306.98 -1.62 -30.55 16 10 C 0.43 20.37 7.82 87.66 0.69 21.06 16 11 O -0.63 -34.93 15.78 -3.07 -0.05 -34.98 16 12 C 0.07 2.19 6.17 85.56 0.53 2.72 16 13 N -0.69 -20.52 6.12 -517.94 -3.17 -23.69 16 14 C 0.06 1.13 5.80 86.30 0.50 1.63 16 15 C 0.13 2.64 5.93 86.38 0.51 3.15 16 16 N -0.72 -10.10 5.56 -463.07 -2.57 -12.68 16 17 C 0.50 8.84 7.63 87.65 0.67 9.51 16 18 O -0.59 -16.59 14.91 -3.04 -0.05 -16.63 16 19 C -0.12 -1.00 4.91 29.85 0.15 -0.86 16 20 C -0.11 -1.42 2.71 -9.78 -0.03 -1.44 16 21 H 0.07 1.26 7.96 -2.39 -0.02 1.24 16 22 C -0.14 -1.11 6.74 31.61 0.21 -0.90 16 23 C 0.03 0.37 7.64 72.48 0.55 0.92 16 24 O -0.41 -8.41 11.65 -148.98 -1.74 -10.14 16 25 C 0.05 0.96 6.30 72.48 0.46 1.42 16 26 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 27 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 28 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.35 11.12 8.43 -89.69 -0.76 10.36 16 31 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.42 2.63 8.47 -92.71 -0.79 1.84 16 36 H 0.13 0.34 8.14 -2.38 -0.02 0.32 16 37 H 0.12 0.39 8.01 -2.39 -0.02 0.37 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.11 0.22 7.73 -2.39 -0.02 0.20 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.06 1.04 7.78 -2.39 -0.02 1.02 16 43 H 0.07 1.73 7.71 -2.39 -0.02 1.71 16 Total: -1.00 -78.25 360.95 -2.60 -80.85 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -1.23 Total: 32.83 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 5.52 Total: 18.78 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -7.09 Total: -115.50 kcal Atomic # 8 Polarization: -59.92 SS G_CDS: -1.83 Total: -61.75 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -78.25 -2.60 -80.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125118208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.048 kcal (2) G-P(sol) polarization free energy of solvation -78.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds