Wall clock time and date at job start Tue Mar 31 2020 05:48:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34638 * 117.00242 * 2 1
4 4 O 1.21511 * 120.00035 * 0.02562 * 3 2 1
5 5 N 1.34774 * 120.00275 * 179.97438 * 3 2 1
6 6 C 1.46501 * 120.00238 * 180.02562 * 5 3 2
7 7 C 1.50703 * 109.46931 * 180.02562 * 6 5 3
8 8 O 1.21276 * 120.00340 * 359.97438 * 7 6 5
9 9 N 1.34780 * 119.99752 * 180.02562 * 7 6 5
10 10 C 1.46501 * 120.00023 * 180.02562 * 9 7 6
11 11 H 1.08997 * 109.49401 * 324.93251 * 10 9 7
12 12 C 1.53041 * 109.49413 * 204.83330 * 10 9 7
13 13 C 1.53046 * 109.53434 * 178.67928 * 12 10 9
14 14 C 1.53198 * 109.31052 * 61.36483 * 13 12 10
15 15 H 1.09000 * 109.69975 * 65.22003 * 14 13 12
16 16 C 1.52994 * 109.58446 * 185.57334 * 14 13 12
17 17 N 1.46926 * 108.77635 * 305.36653 * 14 13 12
18 18 C 1.36942 * 120.62705 * 233.62961 * 17 14 13
19 19 H 1.07999 * 120.00061 * 29.50305 * 18 17 14
20 20 C 1.38809 * 119.99937 * 209.50216 * 18 17 14
21 21 N 1.31621 * 119.99904 * 15.62342 * 20 18 17
22 22 Si 1.86798 * 120.00039 * 195.62349 * 20 18 17
23 23 H 1.48497 * 109.47411 * 94.71789 * 22 20 18
24 24 H 1.48503 * 109.47126 * 214.72227 * 22 20 18
25 25 H 1.48499 * 109.47124 * 334.71737 * 22 20 18
26 26 C 1.46925 * 118.74021 * 53.60874 * 17 14 13
27 27 H 1.08995 * 109.47072 * 300.00025 * 1 2 3
28 28 H 1.08996 * 109.47159 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.46873 * 59.99718 * 1 2 3
30 30 H 0.97004 * 119.99614 * 0.02562 * 5 3 2
31 31 H 1.08999 * 109.46716 * 299.99934 * 6 5 3
32 32 H 1.08999 * 109.47136 * 60.00215 * 6 5 3
33 33 H 0.96999 * 119.99950 * 359.97438 * 9 7 6
34 34 H 1.08993 * 109.45924 * 298.69931 * 12 10 9
35 35 H 1.08998 * 109.45957 * 58.66542 * 12 10 9
36 36 H 1.08998 * 109.49609 * 301.41847 * 13 12 10
37 37 H 1.08994 * 109.49815 * 181.31600 * 13 12 10
38 38 H 1.09003 * 109.46886 * 179.28887 * 16 14 13
39 39 H 1.08995 * 109.47823 * 299.29021 * 16 14 13
40 40 H 1.09001 * 109.47061 * 59.29498 * 16 14 13
41 41 H 0.97000 * 120.00182 * 180.02562 * 21 20 18
42 42 H 1.09007 * 109.58339 * 186.60464 * 26 17 14
43 43 H 1.08993 * 109.58955 * 66.18173 * 26 17 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0633 1.1996 0.0000
4 8 1.4016 2.2187 0.0005
5 7 3.4092 1.2701 0.0005
6 6 4.0743 2.5755 0.0011
7 6 5.5684 2.3779 0.0010
8 8 6.0319 1.2572 0.0009
9 7 6.3894 3.4467 0.0019
10 6 7.8418 3.2548 0.0013
11 1 8.0924 2.3727 0.5905
12 6 8.5199 4.4851 0.6084
13 6 10.0351 4.2718 0.6383
14 6 10.5499 4.0930 -0.7934
15 1 10.4037 5.0161 -1.3544
16 6 12.0387 3.7418 -0.7630
17 7 9.7997 3.0038 -1.4332
18 6 10.4562 1.9516 -2.0140
19 1 11.4185 1.6402 -1.6351
20 6 9.8850 1.2855 -3.0895
21 7 8.8846 1.8329 -3.7465
22 14 10.5362 -0.3879 -3.6043
23 1 9.7257 -1.4536 -2.9620
24 1 10.4477 -0.5207 -5.0808
25 1 11.9531 -0.5198 -3.1796
26 6 8.3317 3.0645 -1.4377
27 1 -0.3633 0.5138 0.8899
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3633 0.5139 -0.8900
30 1 3.9375 0.4566 0.0005
31 1 3.7818 3.1326 -0.8889
32 1 3.7812 3.1322 0.8911
33 1 6.0187 4.3431 0.0024
34 1 8.2885 5.3623 0.0043
35 1 8.1545 4.6370 1.6240
36 1 10.2655 3.3804 1.2217
37 1 10.5156 5.1385 1.0921
38 1 12.4000 3.6026 -1.7819
39 1 12.5934 4.5510 -0.2881
40 1 12.1833 2.8213 -0.1974
41 1 8.4851 1.3673 -4.4979
42 1 7.9288 2.1355 -1.8411
43 1 8.0026 3.9042 -2.0498
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001131834688.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:48:00
Heat of formation + Delta-G solvation = -96.004175 kcal
Electronic energy + Delta-G solvation = -24991.706714 eV
Core-core repulsion = 21265.768348 eV
Total energy + Delta-G solvation = -3725.938366 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 299.168 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.60873 -39.60388 -37.78567 -36.68985 -34.80881 -34.35561 -32.84971 -30.99698
-29.90552 -28.72385 -27.05753 -25.75699 -24.82220 -22.33269 -21.61291 -20.82416
-20.21434 -19.45577 -18.95133 -17.11691 -16.76174 -16.54242 -16.40748 -15.78379
-15.39620 -15.05933 -14.45258 -14.16168 -13.92805 -13.80893 -13.65614 -13.39053
-13.16950 -12.84994 -12.49036 -12.42033 -12.22079 -11.90582 -11.48296 -11.14388
-10.92890 -10.90534 -10.78957 -10.73480 -10.57435 -10.42167 -10.27781 -9.98856
-9.87428 -9.50962 -9.49522 -9.40153 -8.65163 -8.43604 -6.63184 -5.75813
-3.20476 1.98027 2.66965 2.80596 3.37459 3.43038 3.48888 3.49725
4.18990 4.51997 4.76574 4.95993 5.03083 5.16768 5.24420 5.30163
5.30887 5.34455 5.45670 5.54318 5.63984 5.93137 5.97547 6.07180
6.21458 6.24137 6.27679 6.36772 6.42378 6.45434 6.60066 6.69187
6.82992 7.02587 7.10779 7.27146 7.29090 7.69368 7.73341 7.85815
8.19579 8.40489 8.49096 9.23010 9.87158 10.42352 11.32393
Molecular weight = 299.17amu
Principal moments of inertia in cm(-1)
A = 0.015681 B = 0.003874 C = 0.003239
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1785.150639 B = 7225.503931 C = 8641.914350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.057 3.943
2 O -0.370 6.370
3 C 0.651 3.349
4 O -0.578 6.578
5 N -0.694 5.694
6 C 0.119 3.881
7 C 0.505 3.495
8 O -0.528 6.528
9 N -0.713 5.713
10 C 0.116 3.884
11 H 0.083 0.917
12 C -0.116 4.116
13 C -0.126 4.126
14 C 0.164 3.836
15 H 0.025 0.975
16 C -0.137 4.137
17 N -0.583 5.583
18 C -0.254 4.254
19 H 0.071 0.929
20 C 0.007 3.993
21 N -0.900 5.900
22 Si 0.900 3.100
23 H -0.287 1.287
24 H -0.292 1.292
25 H -0.278 1.278
26 C 0.168 3.832
27 H 0.063 0.937
28 H 0.102 0.898
29 H 0.063 0.937
30 H 0.420 0.580
31 H 0.102 0.898
32 H 0.099 0.901
33 H 0.396 0.604
34 H 0.060 0.940
35 H 0.051 0.949
36 H 0.061 0.939
37 H 0.055 0.945
38 H 0.061 0.939
39 H 0.038 0.962
40 H 0.053 0.947
41 H 0.253 0.747
42 H 0.094 0.906
43 H 0.018 0.982
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.490 3.351 9.452 14.512
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.037 4.037
2 O -0.283 6.283
3 C 0.403 3.597
4 O -0.467 6.467
5 N -0.357 5.357
6 C -0.008 4.008
7 C 0.289 3.711
8 O -0.404 6.404
9 N -0.363 5.363
10 C 0.011 3.989
11 H 0.102 0.898
12 C -0.154 4.154
13 C -0.166 4.166
14 C 0.058 3.942
15 H 0.043 0.957
16 C -0.194 4.194
17 N -0.307 5.307
18 C -0.383 4.383
19 H 0.088 0.912
20 C -0.192 4.192
21 N -0.544 5.544
22 Si 0.730 3.270
23 H -0.214 1.214
24 H -0.218 1.218
25 H -0.204 1.204
26 C 0.041 3.959
27 H 0.081 0.919
28 H 0.120 0.880
29 H 0.082 0.918
30 H 0.259 0.741
31 H 0.120 0.880
32 H 0.117 0.883
33 H 0.229 0.771
34 H 0.078 0.922
35 H 0.070 0.930
36 H 0.079 0.921
37 H 0.074 0.926
38 H 0.080 0.920
39 H 0.057 0.943
40 H 0.072 0.928
41 H 0.063 0.937
42 H 0.112 0.888
43 H 0.036 0.964
Dipole moment (debyes) X Y Z Total
from point charges -10.573 2.927 9.288 14.374
hybrid contribution 0.061 -0.655 -0.391 0.765
sum -10.512 2.272 8.897 13.957
Atomic orbital electron populations
1.23196 0.74356 1.03473 1.02708 1.86265 1.24181 1.30856 1.87040
1.17959 0.83122 0.82222 0.76363 1.90993 1.64755 1.34808 1.56178
1.44232 1.03180 1.10707 1.77560 1.21046 0.90085 0.84660 1.05020
1.20230 0.88076 0.85658 0.77109 1.90761 1.76963 1.23534 1.49108
1.45964 1.07725 1.08227 1.74421 1.22070 0.76381 0.98223 1.02209
0.89848 1.21680 0.96720 0.97575 0.99472 1.22047 0.94066 1.00729
0.99747 1.20497 0.91493 0.91545 0.90675 0.95701 1.21802 0.95663
0.99875 1.02072 1.44021 1.00295 1.21235 1.65106 1.19157 1.04153
1.06346 1.08651 0.91174 1.25076 0.98929 0.99460 0.95735 1.70004
1.26767 1.36915 1.20745 0.86311 0.78548 0.84729 0.77403 1.21358
1.21839 1.20368 1.21079 0.83873 1.02085 0.88885 0.91868 0.87966
0.91794 0.74083 0.88001 0.88262 0.77051 0.92156 0.92998 0.92053
0.92615 0.91965 0.94336 0.92813 0.93733 0.88824 0.96406
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.49 10.56 101.05 1.07 1.55 16
2 O -0.37 -4.56 10.62 -40.32 -0.43 -4.99 16
3 C 0.65 9.12 8.75 54.05 0.47 9.60 16
4 O -0.58 -9.17 16.13 -19.28 -0.31 -9.48 16
5 N -0.69 -9.38 5.53 -66.47 -0.37 -9.74 16
6 C 0.12 1.46 6.15 -5.19 -0.03 1.43 16
7 C 0.51 7.88 7.86 -10.98 -0.09 7.80 16
8 O -0.53 -10.57 15.33 5.56 0.09 -10.49 16
9 N -0.71 -10.41 5.08 -53.69 -0.27 -10.69 16
10 C 0.12 2.12 2.60 -67.81 -0.18 1.94 16
11 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16
12 C -0.12 -1.76 5.35 -26.69 -0.14 -1.90 16
13 C -0.13 -2.06 5.37 -26.61 -0.14 -2.20 16
14 C 0.16 3.27 3.50 -67.60 -0.24 3.04 16
15 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16
16 C -0.14 -2.51 7.95 37.15 0.30 -2.22 16
17 N -0.58 -14.15 2.99 -164.78 -0.49 -14.64 16
18 C -0.25 -6.83 8.58 -15.06 -0.13 -6.96 16
19 H 0.07 1.85 6.23 -52.49 -0.33 1.52 16
20 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16
21 N -0.90 -26.29 11.22 55.49 0.62 -25.67 16
22 Si 0.90 22.15 29.58 -169.99 -5.03 17.12 16
23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16
24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
26 C 0.17 3.91 4.86 -3.71 -0.02 3.89 16
27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16
29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
30 H 0.42 5.86 7.55 -40.82 -0.31 5.55 16
31 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16
32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16
33 H 0.40 4.33 8.60 -40.82 -0.35 3.98 16
34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
38 H 0.06 1.24 7.62 -51.93 -0.40 0.85 16
39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.05 1.01 7.44 -51.93 -0.39 0.62 16
41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16
42 H 0.09 2.59 6.12 -51.93 -0.32 2.27 16
43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
LS Contribution 351.42 15.07 5.30 5.30
Total: -1.00 -33.63 351.42 -6.80 -40.43
By element:
Atomic # 1 Polarization: 13.46 SS G_CDS: -6.69 Total: 6.77 kcal
Atomic # 6 Polarization: 15.29 SS G_CDS: 0.79 Total: 16.08 kcal
Atomic # 7 Polarization: -60.24 SS G_CDS: -0.51 Total: -60.75 kcal
Atomic # 8 Polarization: -24.30 SS G_CDS: -0.65 Total: -24.95 kcal
Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -33.63 -6.80 -40.43 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001131834688.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.575 kcal
(2) G-P(sol) polarization free energy of solvation -33.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.205 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.004 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds