Wall clock time and date at job start Tue Mar 31 2020 05:47:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34638 * 117.00242 * 2 1
4 4 O 1.21511 * 120.00035 * 0.02562 * 3 2 1
5 5 N 1.34774 * 120.00275 * 179.97438 * 3 2 1
6 6 C 1.46501 * 120.00238 * 180.02562 * 5 3 2
7 7 C 1.50703 * 109.46931 * 180.02562 * 6 5 3
8 8 O 1.21276 * 120.00340 * 359.97438 * 7 6 5
9 9 N 1.34780 * 119.99752 * 180.02562 * 7 6 5
10 10 C 1.46501 * 120.00023 * 180.02562 * 9 7 6
11 11 H 1.08997 * 109.49401 * 324.93251 * 10 9 7
12 12 C 1.53041 * 109.49413 * 204.83330 * 10 9 7
13 13 C 1.53046 * 109.53434 * 178.67928 * 12 10 9
14 14 C 1.53198 * 109.31052 * 61.36483 * 13 12 10
15 15 H 1.09000 * 109.69975 * 65.22003 * 14 13 12
16 16 C 1.52994 * 109.58446 * 185.57334 * 14 13 12
17 17 N 1.46926 * 108.77635 * 305.36653 * 14 13 12
18 18 C 1.36942 * 120.62705 * 233.62961 * 17 14 13
19 19 H 1.07999 * 120.00061 * 29.50305 * 18 17 14
20 20 C 1.38809 * 119.99937 * 209.50216 * 18 17 14
21 21 N 1.31621 * 119.99904 * 15.62342 * 20 18 17
22 22 Si 1.86798 * 120.00039 * 195.62349 * 20 18 17
23 23 H 1.48497 * 109.47411 * 94.71789 * 22 20 18
24 24 H 1.48503 * 109.47126 * 214.72227 * 22 20 18
25 25 H 1.48499 * 109.47124 * 334.71737 * 22 20 18
26 26 C 1.46925 * 118.74021 * 53.60874 * 17 14 13
27 27 H 1.08995 * 109.47072 * 300.00025 * 1 2 3
28 28 H 1.08996 * 109.47159 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.46873 * 59.99718 * 1 2 3
30 30 H 0.97004 * 119.99614 * 0.02562 * 5 3 2
31 31 H 1.08999 * 109.46716 * 299.99934 * 6 5 3
32 32 H 1.08999 * 109.47136 * 60.00215 * 6 5 3
33 33 H 0.96999 * 119.99950 * 359.97438 * 9 7 6
34 34 H 1.08993 * 109.45924 * 298.69931 * 12 10 9
35 35 H 1.08998 * 109.45957 * 58.66542 * 12 10 9
36 36 H 1.08998 * 109.49609 * 301.41847 * 13 12 10
37 37 H 1.08994 * 109.49815 * 181.31600 * 13 12 10
38 38 H 1.09003 * 109.46886 * 179.28887 * 16 14 13
39 39 H 1.08995 * 109.47823 * 299.29021 * 16 14 13
40 40 H 1.09001 * 109.47061 * 59.29498 * 16 14 13
41 41 H 0.97000 * 120.00182 * 180.02562 * 21 20 18
42 42 H 1.09007 * 109.58339 * 186.60464 * 26 17 14
43 43 H 1.08993 * 109.58955 * 66.18173 * 26 17 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0633 1.1996 0.0000
4 8 1.4016 2.2187 0.0005
5 7 3.4092 1.2701 0.0005
6 6 4.0743 2.5755 0.0011
7 6 5.5684 2.3779 0.0010
8 8 6.0319 1.2572 0.0009
9 7 6.3894 3.4467 0.0019
10 6 7.8418 3.2548 0.0013
11 1 8.0924 2.3727 0.5905
12 6 8.5199 4.4851 0.6084
13 6 10.0351 4.2718 0.6383
14 6 10.5499 4.0930 -0.7934
15 1 10.4037 5.0161 -1.3544
16 6 12.0387 3.7418 -0.7630
17 7 9.7997 3.0038 -1.4332
18 6 10.4562 1.9516 -2.0140
19 1 11.4185 1.6402 -1.6351
20 6 9.8850 1.2855 -3.0895
21 7 8.8846 1.8329 -3.7465
22 14 10.5362 -0.3879 -3.6043
23 1 9.7257 -1.4536 -2.9620
24 1 10.4477 -0.5207 -5.0808
25 1 11.9531 -0.5198 -3.1796
26 6 8.3317 3.0645 -1.4377
27 1 -0.3633 0.5138 0.8899
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3633 0.5139 -0.8900
30 1 3.9375 0.4566 0.0005
31 1 3.7818 3.1326 -0.8889
32 1 3.7812 3.1322 0.8911
33 1 6.0187 4.3431 0.0024
34 1 8.2885 5.3623 0.0043
35 1 8.1545 4.6370 1.6240
36 1 10.2655 3.3804 1.2217
37 1 10.5156 5.1385 1.0921
38 1 12.4000 3.6026 -1.7819
39 1 12.5934 4.5510 -0.2881
40 1 12.1833 2.8213 -0.1974
41 1 8.4851 1.3673 -4.4979
42 1 7.9288 2.1355 -1.8411
43 1 8.0026 3.9042 -2.0498
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001131834688.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:47:59
Heat of formation + Delta-G solvation = -122.553185 kcal
Electronic energy + Delta-G solvation = -24992.857966 eV
Core-core repulsion = 21265.768348 eV
Total energy + Delta-G solvation = -3727.089618 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 299.168 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.68963 -40.90590 -39.31015 -37.72515 -36.15661 -35.64269 -34.65416 -32.43469
-31.73725 -29.74958 -28.06496 -27.44070 -26.39964 -24.01252 -22.75897 -22.14895
-21.58002 -20.96956 -20.12675 -18.35947 -18.13162 -17.77034 -17.73840 -17.24258
-16.85908 -16.41217 -15.86036 -15.65936 -15.29393 -15.08776 -15.03424 -14.75800
-14.49079 -14.23874 -14.10019 -13.63273 -13.46076 -13.06862 -12.96409 -12.73440
-12.72257 -12.56608 -12.26425 -12.10132 -11.96053 -11.89279 -11.82018 -11.65024
-11.42109 -11.13195 -10.95951 -10.53769 -10.46196 -10.09464 -8.60760 -7.84737
-5.30557 1.01250 1.41549 1.45977 1.51138 1.52108 1.63177 2.17684
2.51319 3.22432 3.31427 3.55627 3.78636 4.00112 4.12101 4.24170
4.26497 4.29622 4.34915 4.37996 4.41941 4.63805 4.68316 4.73181
4.82008 4.91383 4.96679 5.02506 5.10328 5.20879 5.26328 5.32995
5.35611 5.46115 5.56007 5.63086 5.71985 5.81654 6.20616 6.41497
6.53624 7.13887 7.16532 7.23004 7.91538 8.40234 9.20261
Molecular weight = 299.17amu
Principal moments of inertia in cm(-1)
A = 0.015681 B = 0.003874 C = 0.003239
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1785.150639 B = 7225.503931 C = 8641.914350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.049 3.951
2 O -0.378 6.378
3 C 0.652 3.348
4 O -0.598 6.598
5 N -0.698 5.698
6 C 0.128 3.872
7 C 0.504 3.496
8 O -0.577 6.577
9 N -0.700 5.700
10 C 0.132 3.868
11 H 0.055 0.945
12 C -0.108 4.108
13 C -0.118 4.118
14 C 0.152 3.848
15 H 0.022 0.978
16 C -0.130 4.130
17 N -0.603 5.603
18 C -0.249 4.249
19 H 0.074 0.926
20 C -0.051 4.051
21 N -0.933 5.933
22 Si 0.954 3.046
23 H -0.296 1.296
24 H -0.295 1.295
25 H -0.262 1.262
26 C 0.178 3.822
27 H 0.067 0.933
28 H 0.134 0.866
29 H 0.063 0.937
30 H 0.417 0.583
31 H 0.115 0.885
32 H 0.130 0.870
33 H 0.418 0.582
34 H 0.074 0.926
35 H 0.088 0.912
36 H 0.052 0.948
37 H 0.095 0.905
38 H 0.036 0.964
39 H 0.078 0.922
40 H 0.045 0.955
41 H 0.244 0.756
42 H 0.043 0.957
43 H -0.001 1.001
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.696 4.803 11.476 16.406
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.045 4.045
2 O -0.291 6.291
3 C 0.405 3.595
4 O -0.490 6.490
5 N -0.360 5.360
6 C 0.002 3.998
7 C 0.291 3.709
8 O -0.456 6.456
9 N -0.352 5.352
10 C 0.026 3.974
11 H 0.073 0.927
12 C -0.146 4.146
13 C -0.158 4.158
14 C 0.047 3.953
15 H 0.039 0.961
16 C -0.188 4.188
17 N -0.328 5.328
18 C -0.380 4.380
19 H 0.091 0.909
20 C -0.246 4.246
21 N -0.579 5.579
22 Si 0.783 3.217
23 H -0.224 1.224
24 H -0.222 1.222
25 H -0.187 1.187
26 C 0.051 3.949
27 H 0.086 0.914
28 H 0.152 0.848
29 H 0.082 0.918
30 H 0.255 0.745
31 H 0.133 0.867
32 H 0.148 0.852
33 H 0.256 0.744
34 H 0.093 0.907
35 H 0.106 0.894
36 H 0.071 0.929
37 H 0.113 0.887
38 H 0.056 0.944
39 H 0.097 0.903
40 H 0.064 0.936
41 H 0.053 0.947
42 H 0.061 0.939
43 H 0.017 0.983
Dipole moment (debyes) X Y Z Total
from point charges -10.779 4.429 11.342 16.262
hybrid contribution 0.118 -1.081 -1.005 1.480
sum -10.661 3.348 10.338 15.223
Atomic orbital electron populations
1.23550 0.72311 1.05718 1.02912 1.86278 1.26213 1.29969 1.86673
1.18012 0.83046 0.82466 0.76020 1.90971 1.65130 1.35535 1.57318
1.44326 1.03253 1.11002 1.77394 1.21096 0.87114 0.84602 1.07015
1.20821 0.89552 0.84911 0.75662 1.90746 1.78089 1.25557 1.51232
1.45738 1.06330 1.09387 1.73701 1.21552 0.78516 0.99191 0.98191
0.92679 1.21653 0.95626 0.95873 1.01421 1.21949 0.94996 1.02073
0.96740 1.20815 0.92122 0.89778 0.92549 0.96055 1.21739 0.95105
1.01083 1.00841 1.44324 1.00955 1.22146 1.65330 1.19480 1.03975
1.06749 1.07769 0.90877 1.25754 0.99856 1.02480 0.96552 1.70155
1.28421 1.37980 1.21392 0.85437 0.78605 0.81035 0.76596 1.22381
1.22177 1.18673 1.20794 0.83770 0.98642 0.91722 0.91435 0.84777
0.91846 0.74486 0.86726 0.85230 0.74434 0.90717 0.89364 0.92893
0.88697 0.94449 0.90342 0.93558 0.94680 0.93874 0.98268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.76 10.56 113.37 1.20 1.95 16
2 O -0.38 -9.00 10.62 -55.47 -0.59 -9.59 16
3 C 0.65 17.72 8.75 129.79 1.14 18.86 16
4 O -0.60 -18.25 16.13 19.81 0.32 -17.93 16
5 N -0.70 -18.49 5.53 -594.61 -3.29 -21.78 16
6 C 0.13 2.95 6.15 85.63 0.53 3.48 16
7 C 0.50 15.59 7.86 87.66 0.69 16.27 16
8 O -0.58 -23.85 15.33 -3.02 -0.05 -23.89 16
9 N -0.70 -19.59 5.08 -442.16 -2.25 -21.83 16
10 C 0.13 4.72 2.60 45.07 0.12 4.84 16
11 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16
12 C -0.11 -2.90 5.35 30.62 0.16 -2.74 16
13 C -0.12 -3.46 5.37 30.68 0.16 -3.30 16
14 C 0.15 5.86 3.50 44.97 0.16 6.02 16
15 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16
16 C -0.13 -4.58 7.95 71.98 0.57 -4.01 16
17 N -0.60 -29.70 2.99 -675.23 -2.02 -31.72 16
18 C -0.25 -13.72 8.58 84.03 0.72 -13.00 16
19 H 0.07 3.90 6.23 -2.91 -0.02 3.88 16
20 C -0.05 -2.95 4.94 84.86 0.42 -2.53 16
21 N -0.93 -56.99 11.22 21.65 0.24 -56.75 16
22 Si 0.95 46.97 29.58 68.60 2.03 49.00 16
23 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16
24 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16
25 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16
26 C 0.18 8.51 4.86 86.36 0.42 8.93 16
27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16
28 H 0.13 1.17 8.14 -2.39 -0.02 1.16 16
29 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16
30 H 0.42 11.80 7.55 -92.71 -0.70 11.10 16
31 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16
32 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16
33 H 0.42 8.03 8.60 -92.71 -0.80 7.23 16
34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16
35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16
36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
37 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16
38 H 0.04 1.47 7.62 -2.39 -0.02 1.45 16
39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16
40 H 0.05 1.67 7.44 -2.39 -0.02 1.65 16
41 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16
42 H 0.04 2.50 6.12 -2.38 -0.01 2.49 16
43 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16
Total: -1.00 -77.29 351.42 0.22 -77.07
By element:
Atomic # 1 Polarization: 23.11 SS G_CDS: -0.47 Total: 22.65 kcal
Atomic # 6 Polarization: 28.49 SS G_CDS: 6.28 Total: 34.78 kcal
Atomic # 7 Polarization: -124.77 SS G_CDS: -7.31 Total: -132.08 kcal
Atomic # 8 Polarization: -51.10 SS G_CDS: -0.32 Total: -51.41 kcal
Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal
Total: -77.29 0.22 -77.07 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001131834688.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.488 kcal
(2) G-P(sol) polarization free energy of solvation -77.286 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.774 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.221 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.065 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.553 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds