Wall clock time and date at job start Tue Mar 31 2020 05:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 110.45274 * 2 1 4 4 O 1.21283 * 119.99850 * 122.60983 * 3 2 1 5 5 N 1.34775 * 119.99988 * 302.60434 * 3 2 1 6 6 C 1.46493 * 120.00157 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47443 * 180.02562 * 6 5 3 8 8 N 1.46895 * 109.47035 * 179.97438 * 7 6 5 9 9 C 1.46906 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47109 * 179.97438 * 9 8 7 11 11 O 1.21296 * 119.99996 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99978 * 180.02562 * 10 9 8 13 13 C 1.37099 * 119.99848 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00405 * 359.97438 * 13 12 10 15 15 C 1.38953 * 119.99358 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00464 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99431 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47151 * 90.00176 * 17 15 13 19 19 H 1.48498 * 109.47184 * 210.00131 * 17 15 13 20 20 H 1.48501 * 109.47470 * 330.00337 * 17 15 13 21 21 C 1.54507 * 110.51492 * 122.60430 * 2 1 3 22 22 C 1.54480 * 104.06491 * 118.78162 * 21 2 1 23 23 O 1.44429 * 104.79852 * 23.98163 * 22 21 2 24 24 C 1.44418 * 105.27583 * 319.48324 * 23 22 21 25 25 H 1.08999 * 109.47592 * 59.30561 * 1 2 3 26 26 H 1.09003 * 109.46914 * 179.30212 * 1 2 3 27 27 H 1.09000 * 109.47047 * 299.29657 * 1 2 3 28 28 H 0.97000 * 119.99905 * 359.97438 * 5 3 2 29 29 H 1.09007 * 109.47336 * 59.99621 * 6 5 3 30 30 H 1.09005 * 109.46885 * 300.00162 * 6 5 3 31 31 H 1.08996 * 109.46863 * 59.99760 * 7 6 5 32 32 H 1.09002 * 109.46661 * 299.99937 * 7 6 5 33 33 H 1.00899 * 111.00672 * 56.04786 * 8 7 6 34 34 H 1.08992 * 109.47459 * 299.99826 * 9 8 7 35 35 H 1.09004 * 109.47040 * 59.99976 * 9 8 7 36 36 H 0.97002 * 119.99767 * 359.97438 * 12 10 9 37 37 H 0.96997 * 119.99770 * 179.97438 * 16 15 13 38 38 H 1.08997 * 110.51208 * 237.43290 * 21 2 1 39 39 H 1.08998 * 110.50865 * 0.02562 * 21 2 1 40 40 H 1.08993 * 110.36922 * 142.80838 * 22 21 2 41 41 H 1.09000 * 110.37350 * 265.14927 * 22 21 2 42 42 H 1.09002 * 110.37639 * 281.68442 * 24 23 22 43 43 H 1.09000 * 110.37222 * 159.34449 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0566 1.4120 0.0000 4 8 2.7989 1.7824 0.8848 5 7 1.7028 2.2632 -0.9833 6 6 2.2151 3.6356 -0.9836 7 6 1.6645 4.3854 -2.1984 8 7 2.1778 5.7617 -2.1983 9 6 1.6692 6.5133 -3.3536 10 6 2.2154 7.9174 -3.3193 11 8 2.9559 8.2584 -2.4212 12 7 1.8811 8.7943 -4.2867 13 6 2.3784 10.0715 -4.2558 14 1 3.0377 10.3752 -3.4561 15 6 2.0341 10.9753 -5.2535 16 7 1.2323 10.6058 -6.2268 17 14 2.7112 12.7158 -5.2110 18 1 3.9959 12.7655 -5.9541 19 1 1.7373 13.6414 -5.8437 20 1 2.9385 13.1244 -3.8015 21 6 2.0715 -0.7797 1.2190 22 6 2.8788 -1.9394 0.5946 23 8 3.2435 -1.4683 -0.7211 24 6 2.0743 -0.7807 -1.2168 25 1 -0.3634 0.5246 -0.8837 26 1 -0.3633 -1.0276 -0.0125 27 1 -0.3633 0.5029 0.8962 28 1 1.1095 1.9668 -1.6911 29 1 3.3040 3.6170 -1.0305 30 1 1.8995 4.1415 -0.0711 31 1 0.5757 4.4040 -2.1509 32 1 1.9798 3.8796 -3.1110 33 1 3.1865 5.7716 -2.1766 34 1 1.9853 6.0225 -4.2740 35 1 0.5804 6.5463 -3.3148 36 1 1.2892 8.5215 -5.0052 37 1 0.9917 11.2369 -6.9230 38 1 2.7200 -0.1439 1.8217 39 1 1.2491 -1.1656 1.8215 40 1 3.7715 -2.1418 1.1861 41 1 2.2612 -2.8344 0.5195 42 1 1.3333 -1.4981 -1.5697 43 1 2.3490 -0.0932 -2.0168 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135776189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:42 Heat of formation + Delta-G solvation = -121.650672 kcal Electronic energy + Delta-G solvation = -23609.153769 eV Core-core repulsion = 19882.103288 eV Total energy + Delta-G solvation = -3727.050482 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01934 -38.78109 -38.30388 -36.33546 -34.55977 -34.07189 -33.69341 -31.25569 -30.37888 -29.16497 -26.92205 -26.11668 -24.22791 -23.57227 -22.55015 -21.96087 -19.82811 -19.29376 -17.95437 -17.69167 -16.57639 -16.45238 -16.17740 -15.92012 -15.82216 -15.31125 -15.01490 -14.59699 -14.37813 -14.02555 -13.86405 -13.67696 -13.45789 -13.31087 -13.10427 -12.84569 -12.42720 -12.14293 -11.91687 -11.85415 -11.58811 -11.52613 -11.47372 -11.40768 -11.12135 -11.04258 -10.40189 -10.39239 -10.23174 -9.89997 -9.52569 -9.30817 -8.52494 -8.15334 -7.98154 -6.43347 -3.84146 2.33904 2.76782 3.17253 3.26111 3.32423 3.52137 3.86641 3.88237 4.07295 4.18227 4.37115 4.41956 4.52727 4.70031 4.76207 4.83383 4.95422 4.98913 5.05788 5.15621 5.19734 5.24152 5.24976 5.32592 5.35539 5.43917 5.55226 5.70067 5.76998 5.80822 5.87588 5.92025 6.14799 6.23666 6.30652 7.06530 7.20565 7.53948 7.54368 7.94363 8.04492 8.59236 9.16275 9.52043 10.03391 10.74344 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.046093 B = 0.001973 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.326413 B =14186.161134 C =14343.545105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.528 3.472 4 O -0.529 6.529 5 N -0.726 5.726 6 C 0.119 3.881 7 C 0.050 3.950 8 N -0.665 5.665 9 C 0.052 3.948 10 C 0.440 3.560 11 O -0.582 6.582 12 N -0.563 5.563 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 C -0.145 4.145 22 C 0.046 3.954 23 O -0.370 6.370 24 C 0.058 3.942 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.399 0.601 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.353 0.647 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.857 -25.945 7.329 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 C 0.314 3.686 4 O -0.405 6.405 5 N -0.378 5.378 6 C -0.004 4.004 7 C -0.081 4.081 8 N -0.299 5.299 9 C -0.080 4.080 10 C 0.225 3.775 11 O -0.466 6.466 12 N -0.200 5.200 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.183 4.183 22 C -0.031 4.031 23 O -0.288 6.288 24 C -0.019 4.019 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.233 0.767 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.172 0.828 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.156 -25.087 8.732 26.886 hybrid contribution -0.172 0.273 -1.579 1.612 sum -4.328 -24.814 7.153 26.185 Atomic orbital electron populations 1.21827 0.91103 1.03232 1.03213 1.22200 0.98004 0.93547 0.98403 1.20121 0.80503 0.86572 0.81446 1.90703 1.35777 1.77567 1.36452 1.45865 1.51139 1.12805 1.28035 1.21316 0.99182 0.80235 0.99704 1.22077 1.00730 0.89460 0.95786 1.59944 1.15802 1.10708 1.43408 1.21672 1.00809 0.94120 0.91430 1.19775 0.86293 0.86636 0.84814 1.90537 1.40165 1.78996 1.36899 1.41856 1.43684 1.11005 1.23429 1.19715 1.26732 0.86499 1.09945 0.87873 1.25273 0.96867 1.00420 0.95424 1.69610 1.35145 1.36668 1.12905 0.85844 0.78348 0.81339 0.78684 1.20412 1.20918 1.19373 1.23081 1.01057 0.97192 0.96939 1.23455 0.99804 0.95928 0.83906 1.89175 1.34716 1.73636 1.31275 1.23511 0.88489 0.94986 0.94949 0.91620 0.90994 0.91311 0.76706 0.91241 0.90097 0.90465 0.94905 0.82767 0.93689 0.89463 0.77453 0.91863 0.88095 0.89783 0.88729 0.92091 0.90845 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 8.18 37.16 0.30 -0.35 16 2 C -0.12 -0.88 0.89 -154.09 -0.14 -1.02 16 3 C 0.53 5.75 6.46 -10.98 -0.07 5.68 16 4 O -0.53 -8.08 15.28 5.55 0.08 -7.99 16 5 N -0.73 -6.55 5.27 -60.29 -0.32 -6.87 16 6 C 0.12 1.35 5.93 -4.04 -0.02 1.32 16 7 C 0.05 0.55 5.80 -3.82 -0.02 0.53 16 8 N -0.67 -10.44 6.13 -115.06 -0.70 -11.14 16 9 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 10 C 0.44 10.33 7.82 -10.98 -0.09 10.24 16 11 O -0.58 -15.88 15.78 5.54 0.09 -15.79 16 12 N -0.56 -14.20 5.29 -10.96 -0.06 -14.25 16 13 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 14 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 17 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 C -0.14 -1.10 6.32 -25.16 -0.16 -1.26 16 22 C 0.05 0.33 7.63 37.93 0.29 0.62 16 23 O -0.37 -3.68 11.65 -35.23 -0.41 -4.09 16 24 C 0.06 0.41 6.72 37.94 0.26 0.67 16 25 H 0.06 0.24 7.49 -51.93 -0.39 -0.15 16 26 H 0.07 0.24 8.13 -51.93 -0.42 -0.18 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.40 2.37 7.80 -40.82 -0.32 2.05 16 29 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.35 5.78 8.43 -39.29 -0.33 5.45 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.10 1.03 6.50 -51.93 -0.34 0.69 16 39 H 0.08 0.46 7.73 -51.93 -0.40 0.06 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.35 7.86 -51.93 -0.41 -0.06 16 43 H 0.09 0.63 7.72 -51.93 -0.40 0.23 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -34.73 358.72 -6.78 -41.51 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.65 Total: 11.60 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 0.08 Total: 9.28 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.36 Total: -55.95 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.24 Total: -27.88 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.73 -6.78 -41.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135776189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.136 kcal (2) G-P(sol) polarization free energy of solvation -34.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds