Wall clock time and date at job start Tue Mar 31 2020 05:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 110.45274 * 2 1 4 4 O 1.21283 * 119.99850 * 122.60983 * 3 2 1 5 5 N 1.34775 * 119.99988 * 302.60434 * 3 2 1 6 6 C 1.46493 * 120.00157 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47443 * 180.02562 * 6 5 3 8 8 N 1.46895 * 109.47035 * 179.97438 * 7 6 5 9 9 C 1.46906 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47109 * 179.97438 * 9 8 7 11 11 O 1.21296 * 119.99996 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99978 * 180.02562 * 10 9 8 13 13 C 1.37099 * 119.99848 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00405 * 359.97438 * 13 12 10 15 15 C 1.38953 * 119.99358 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00464 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99431 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47151 * 90.00176 * 17 15 13 19 19 H 1.48498 * 109.47184 * 210.00131 * 17 15 13 20 20 H 1.48501 * 109.47470 * 330.00337 * 17 15 13 21 21 C 1.54507 * 110.51492 * 122.60430 * 2 1 3 22 22 C 1.54480 * 104.06491 * 118.78162 * 21 2 1 23 23 O 1.44429 * 104.79852 * 23.98163 * 22 21 2 24 24 C 1.44418 * 105.27583 * 319.48324 * 23 22 21 25 25 H 1.08999 * 109.47592 * 59.30561 * 1 2 3 26 26 H 1.09003 * 109.46914 * 179.30212 * 1 2 3 27 27 H 1.09000 * 109.47047 * 299.29657 * 1 2 3 28 28 H 0.97000 * 119.99905 * 359.97438 * 5 3 2 29 29 H 1.09007 * 109.47336 * 59.99621 * 6 5 3 30 30 H 1.09005 * 109.46885 * 300.00162 * 6 5 3 31 31 H 1.08996 * 109.46863 * 59.99760 * 7 6 5 32 32 H 1.09002 * 109.46661 * 299.99937 * 7 6 5 33 33 H 1.00899 * 111.00672 * 56.04786 * 8 7 6 34 34 H 1.08992 * 109.47459 * 299.99826 * 9 8 7 35 35 H 1.09004 * 109.47040 * 59.99976 * 9 8 7 36 36 H 0.97002 * 119.99767 * 359.97438 * 12 10 9 37 37 H 0.96997 * 119.99770 * 179.97438 * 16 15 13 38 38 H 1.08997 * 110.51208 * 237.43290 * 21 2 1 39 39 H 1.08998 * 110.50865 * 0.02562 * 21 2 1 40 40 H 1.08993 * 110.36922 * 142.80838 * 22 21 2 41 41 H 1.09000 * 110.37350 * 265.14927 * 22 21 2 42 42 H 1.09002 * 110.37639 * 281.68442 * 24 23 22 43 43 H 1.09000 * 110.37222 * 159.34449 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0566 1.4120 0.0000 4 8 2.7989 1.7824 0.8848 5 7 1.7028 2.2632 -0.9833 6 6 2.2151 3.6356 -0.9836 7 6 1.6645 4.3854 -2.1984 8 7 2.1778 5.7617 -2.1983 9 6 1.6692 6.5133 -3.3536 10 6 2.2154 7.9174 -3.3193 11 8 2.9559 8.2584 -2.4212 12 7 1.8811 8.7943 -4.2867 13 6 2.3784 10.0715 -4.2558 14 1 3.0377 10.3752 -3.4561 15 6 2.0341 10.9753 -5.2535 16 7 1.2323 10.6058 -6.2268 17 14 2.7112 12.7158 -5.2110 18 1 3.9959 12.7655 -5.9541 19 1 1.7373 13.6414 -5.8437 20 1 2.9385 13.1244 -3.8015 21 6 2.0715 -0.7797 1.2190 22 6 2.8788 -1.9394 0.5946 23 8 3.2435 -1.4683 -0.7211 24 6 2.0743 -0.7807 -1.2168 25 1 -0.3634 0.5246 -0.8837 26 1 -0.3633 -1.0276 -0.0125 27 1 -0.3633 0.5029 0.8962 28 1 1.1095 1.9668 -1.6911 29 1 3.3040 3.6170 -1.0305 30 1 1.8995 4.1415 -0.0711 31 1 0.5757 4.4040 -2.1509 32 1 1.9798 3.8796 -3.1110 33 1 3.1865 5.7716 -2.1766 34 1 1.9853 6.0225 -4.2740 35 1 0.5804 6.5463 -3.3148 36 1 1.2892 8.5215 -5.0052 37 1 0.9917 11.2369 -6.9230 38 1 2.7200 -0.1439 1.8217 39 1 1.2491 -1.1656 1.8215 40 1 3.7715 -2.1418 1.1861 41 1 2.2612 -2.8344 0.5195 42 1 1.3333 -1.4981 -1.5697 43 1 2.3490 -0.0932 -2.0168 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135776189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:42 Heat of formation + Delta-G solvation = -151.360343 kcal Electronic energy + Delta-G solvation = -23610.442077 eV Core-core repulsion = 19882.103288 eV Total energy + Delta-G solvation = -3728.338790 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73682 -40.18207 -39.48338 -37.49585 -36.02254 -35.38635 -34.62196 -33.27428 -31.11562 -30.14715 -27.72539 -27.32748 -25.75226 -24.34142 -23.40411 -22.80547 -21.10955 -20.57645 -19.92650 -18.45952 -17.74976 -17.35770 -17.26349 -17.01729 -16.62135 -16.47827 -16.05956 -16.05543 -15.74571 -15.26397 -15.12860 -14.82576 -14.49382 -14.08177 -14.00295 -13.70113 -13.53373 -13.35850 -13.26873 -12.95180 -12.71670 -12.53843 -12.45668 -12.45136 -12.41426 -12.12634 -12.01149 -11.65555 -11.51684 -11.09959 -10.63124 -10.37564 -10.20444 -10.02287 -9.39978 -8.47532 -5.96084 1.37633 1.41794 1.51366 1.54360 1.94119 2.04488 2.29897 2.98279 2.99592 3.19783 3.30596 3.50988 3.65161 3.82077 3.91592 4.01113 4.09434 4.19382 4.29742 4.31094 4.44319 4.49735 4.54500 4.59945 4.64883 4.73637 4.80605 4.85518 4.88313 4.94475 4.95843 5.13703 5.23373 5.33352 5.40616 5.77549 5.83515 6.06276 6.29668 6.45825 6.59541 7.12104 7.16035 7.55458 8.11231 8.69702 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.046093 B = 0.001973 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.326413 B =14186.161134 C =14343.545105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C 0.520 3.480 4 O -0.583 6.583 5 N -0.710 5.710 6 C 0.127 3.873 7 C 0.059 3.941 8 N -0.687 5.687 9 C 0.068 3.932 10 C 0.434 3.566 11 O -0.626 6.626 12 N -0.572 5.572 13 C -0.335 4.335 14 H 0.077 0.923 15 C -0.013 4.013 16 N -0.918 5.918 17 Si 0.992 3.008 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.275 1.275 21 C -0.147 4.147 22 C 0.044 3.956 23 O -0.404 6.404 24 C 0.056 3.944 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.417 0.583 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.345 0.655 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.398 0.602 37 H 0.278 0.722 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.744 -27.559 5.973 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 C 0.308 3.692 4 O -0.463 6.463 5 N -0.363 5.363 6 C 0.002 3.998 7 C -0.070 4.070 8 N -0.320 5.320 9 C -0.064 4.064 10 C 0.222 3.778 11 O -0.513 6.513 12 N -0.209 5.209 13 C -0.465 4.465 14 H 0.095 0.905 15 C -0.212 4.212 16 N -0.559 5.559 17 Si 0.816 3.184 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.200 1.200 21 C -0.185 4.185 22 C -0.032 4.032 23 O -0.323 6.323 24 C -0.021 4.021 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.255 0.745 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.163 0.837 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.232 0.768 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.098 -26.740 7.326 28.388 hybrid contribution 0.429 0.726 -1.118 1.400 sum -5.669 -26.013 6.208 27.338 Atomic orbital electron populations 1.21871 0.88526 1.04998 1.03631 1.22235 0.99818 0.90805 0.98689 1.20891 0.79616 0.88055 0.80682 1.90684 1.38218 1.78804 1.38553 1.45689 1.50811 1.11625 1.28180 1.21060 0.98257 0.81387 0.99071 1.22071 1.01543 0.87042 0.96310 1.59915 1.15455 1.13442 1.43156 1.21530 1.01655 0.89984 0.93216 1.20954 0.84902 0.88759 0.83197 1.90507 1.41951 1.80448 1.38380 1.41916 1.44085 1.10696 1.24215 1.19654 1.28029 0.88451 1.10319 0.90483 1.26028 0.96776 1.03756 0.94683 1.69660 1.35250 1.37944 1.13065 0.84937 0.78185 0.76910 0.78356 1.19622 1.19429 1.19966 1.23091 1.01366 0.96983 0.97061 1.23595 1.00156 0.96562 0.82916 1.89135 1.36572 1.74178 1.32402 1.23715 0.88400 0.95528 0.94413 0.89985 0.88589 0.92138 0.74483 0.92971 0.92381 0.88539 0.92420 0.83655 0.90867 0.87145 0.76807 0.91250 0.91464 0.87416 0.89097 0.89305 0.87636 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 8.18 71.98 0.59 -0.26 16 2 C -0.11 -1.49 0.89 -51.91 -0.05 -1.53 16 3 C 0.52 11.21 6.46 87.66 0.57 11.78 16 4 O -0.58 -18.74 15.28 -3.04 -0.05 -18.79 16 5 N -0.71 -11.90 5.27 -463.05 -2.44 -14.34 16 6 C 0.13 2.82 5.93 86.38 0.51 3.34 16 7 C 0.06 1.18 5.80 86.31 0.50 1.68 16 8 N -0.69 -20.77 6.13 -517.92 -3.17 -23.95 16 9 C 0.07 2.20 6.17 85.56 0.53 2.73 16 10 C 0.43 20.48 7.82 87.66 0.69 21.17 16 11 O -0.63 -35.10 15.78 -3.08 -0.05 -35.15 16 12 N -0.57 -29.06 5.29 -306.98 -1.62 -30.68 16 13 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 14 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 15 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 16 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 17 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 C -0.15 -2.13 6.32 31.61 0.20 -1.93 16 22 C 0.04 0.58 7.63 72.49 0.55 1.13 16 23 O -0.40 -7.58 11.65 -148.98 -1.74 -9.32 16 24 C 0.06 0.66 6.72 72.49 0.49 1.15 16 25 H 0.08 0.27 7.49 -2.39 -0.02 0.25 16 26 H 0.10 0.21 8.13 -2.39 -0.02 0.19 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.42 3.76 7.80 -92.71 -0.72 3.04 16 29 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.34 11.31 8.43 -89.69 -0.76 10.55 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 36 H 0.40 18.93 7.90 -92.71 -0.73 18.20 16 37 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 38 H 0.07 1.46 6.50 -2.39 -0.02 1.44 16 39 H 0.11 0.98 7.73 -2.39 -0.02 0.96 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.11 0.58 7.86 -2.39 -0.02 0.56 16 43 H 0.09 1.06 7.72 -2.39 -0.02 1.04 16 Total: -1.00 -78.68 358.72 -2.06 -80.75 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -1.16 Total: 34.45 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: 5.86 Total: 20.81 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -6.95 Total: -117.74 kcal Atomic # 8 Polarization: -61.42 SS G_CDS: -1.83 Total: -63.25 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -78.68 -2.06 -80.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135776189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.613 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds