Wall clock time and date at job start Tue Mar 31 2020 05:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99831 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00453 * 3 2 1 5 5 H 1.48494 * 109.47103 * 30.00048 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00557 * 3 2 1 7 7 C 1.38811 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00534 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99483 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99804 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47250 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47400 * 180.02562 * 11 10 9 13 13 C 1.34770 * 120.00396 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00056 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00486 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47491 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.47159 * 179.97438 * 16 15 13 18 18 O 1.21283 * 120.00262 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99928 * 179.72352 * 17 16 15 20 20 C 1.47151 * 120.98153 * 359.97438 * 19 17 16 21 21 C 1.53717 * 108.16446 * 129.42886 * 20 19 17 22 22 O 1.42967 * 109.14561 * 52.53739 * 21 20 19 23 23 C 1.42962 * 114.16617 * 297.29050 * 22 21 20 24 24 C 1.47151 * 120.98263 * 180.27616 * 19 17 16 25 25 H 0.97000 * 120.00665 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00593 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.46866 * 60.00181 * 10 9 7 28 28 H 1.08994 * 109.46998 * 300.00383 * 10 9 7 29 29 H 1.09004 * 109.47066 * 60.00270 * 11 10 9 30 30 H 1.09000 * 109.47234 * 300.00778 * 11 10 9 31 31 H 0.97001 * 120.00043 * 0.02562 * 12 11 10 32 32 H 1.09004 * 109.46801 * 60.00195 * 15 13 12 33 33 H 1.09000 * 109.47461 * 300.00727 * 15 13 12 34 34 H 1.09004 * 109.47066 * 60.00201 * 16 15 13 35 35 H 1.08994 * 109.47405 * 300.00031 * 16 15 13 36 36 H 1.08997 * 109.67944 * 249.20758 * 20 19 17 37 37 H 1.09001 * 109.68346 * 9.76100 * 20 19 17 38 38 H 1.08998 * 109.65611 * 292.57311 * 21 20 19 39 39 H 1.08994 * 109.48424 * 172.39690 * 21 20 19 40 40 H 1.09008 * 109.51186 * 302.65841 * 23 22 21 41 41 H 1.08996 * 109.55507 * 182.53559 * 23 22 21 42 42 H 1.09000 * 109.68250 * 350.23937 * 24 19 17 43 43 H 1.09002 * 109.68088 * 110.79250 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 7 1.7965 -6.0884 -0.0026 13 6 1.1227 -7.2556 -0.0025 14 8 -0.0901 -7.2557 -0.0024 15 6 1.8762 -8.5607 -0.0024 16 6 0.8820 -9.7236 -0.0029 17 6 1.6356 -11.0287 -0.0035 18 8 2.8484 -11.0287 -0.0031 19 7 0.9617 -12.1959 0.0016 20 6 -0.5096 -12.2212 0.0083 21 6 -0.9779 -13.1588 -1.1161 22 8 -0.3211 -14.4212 -0.9779 23 6 1.1008 -14.3589 -1.1122 24 6 1.6756 -13.4827 0.0072 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6855 -3.7149 0.8879 28 1 2.6841 -3.7141 -0.8921 29 1 0.4370 -4.7614 -0.8918 30 1 0.4376 -4.7626 0.8881 31 1 2.7665 -6.0884 -0.0023 32 1 2.5028 -8.6183 0.8876 33 1 2.5029 -8.6185 -0.8923 34 1 0.2556 -9.6658 -0.8932 35 1 0.2550 -9.6661 0.8868 36 1 -0.8659 -12.5901 0.9701 37 1 -0.8948 -11.2164 -0.1656 38 1 -0.7297 -12.7233 -2.0839 39 1 -2.0564 -13.3000 -1.0461 40 1 1.3566 -13.9277 -2.0801 41 1 1.5184 -15.3630 -1.0393 42 1 2.7381 -13.3138 -0.1675 43 1 1.5351 -13.9762 0.9689 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150052118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:54 Heat of formation + Delta-G solvation = -106.521738 kcal Electronic energy + Delta-G solvation = -23447.898522 eV Core-core repulsion = 19721.504080 eV Total energy + Delta-G solvation = -3726.394442 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82057 -39.61951 -38.66301 -35.75305 -35.22291 -33.84530 -33.28973 -31.83748 -31.17832 -28.71665 -27.83708 -25.72525 -24.43652 -23.43886 -22.33692 -21.46351 -20.26372 -19.46521 -18.09191 -17.28816 -16.99494 -16.62766 -16.51653 -16.03171 -15.80474 -15.55312 -15.46135 -15.15891 -14.56978 -14.48063 -14.15441 -13.70522 -13.42644 -13.20015 -13.05401 -12.87037 -12.80542 -12.51356 -12.03953 -11.94498 -11.55294 -11.35484 -11.26763 -11.11954 -10.83699 -10.81432 -10.71896 -10.17487 -10.12927 -9.90704 -9.70612 -9.07287 -9.00156 -8.84373 -7.00653 -5.80746 -3.11500 2.21631 2.35201 2.68755 3.24288 3.28309 3.41718 3.46895 3.48685 4.07423 4.17310 4.39682 4.50412 4.56426 4.58296 4.63553 4.70545 4.80105 4.88725 4.98244 5.06943 5.18337 5.24311 5.33261 5.38126 5.48726 5.53007 5.54284 5.63915 5.76520 5.89903 5.95101 6.13722 6.47484 6.53075 6.69310 6.72851 6.83835 7.58691 7.65107 7.71380 8.27935 8.36952 9.48165 10.02816 10.37593 11.41806 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.049796 B = 0.001900 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.159217 B =14735.545075 C =15153.675789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.144 3.856 11 C 0.110 3.890 12 N -0.722 5.722 13 C 0.510 3.490 14 O -0.547 6.547 15 C -0.125 4.125 16 C -0.123 4.123 17 C 0.519 3.481 18 O -0.539 6.539 19 N -0.620 5.620 20 C 0.069 3.931 21 C 0.046 3.954 22 O -0.380 6.380 23 C 0.048 3.952 24 C 0.076 3.924 25 H 0.257 0.743 26 H 0.386 0.614 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.401 0.599 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.086 -30.688 -1.112 30.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.013 4.013 12 N -0.373 5.373 13 C 0.296 3.704 14 O -0.425 6.425 15 C -0.166 4.166 16 C -0.163 4.163 17 C 0.308 3.692 18 O -0.415 6.415 19 N -0.356 5.356 20 C -0.054 4.054 21 C -0.031 4.031 22 O -0.298 6.298 23 C -0.030 4.030 24 C -0.047 4.047 25 H 0.066 0.934 26 H 0.220 0.780 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.235 0.765 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.896 -30.696 -1.069 30.728 hybrid contribution 0.684 1.212 -0.015 1.392 sum 1.580 -29.484 -1.084 29.546 Atomic orbital electron populations 1.69663 1.05150 1.25854 1.57219 1.24785 0.95581 0.97844 1.02676 0.86140 0.78607 0.83562 0.77546 1.21629 1.21682 1.20704 1.19198 0.91057 0.83860 1.43405 0.91010 1.42193 1.05994 0.99581 1.89714 1.20765 0.93510 0.85693 0.98460 1.21582 0.95456 0.81762 1.02531 1.45940 1.10597 1.06034 1.74744 1.20542 0.88169 0.85492 0.76168 1.90704 1.13976 1.87854 1.49998 1.21370 0.98515 0.90751 1.05933 1.21398 0.98822 0.90184 1.05935 1.20835 0.87975 0.85290 0.75054 1.90706 1.13913 1.87269 1.49642 1.48157 1.06981 1.05924 1.74492 1.22621 0.79738 1.02437 1.00604 1.23088 0.98280 0.84411 0.97363 1.87979 1.19033 1.29602 1.93219 1.23008 0.81397 1.01036 0.97536 1.22304 0.98839 0.83642 0.99900 0.93360 0.78016 0.95757 0.95779 0.91284 0.91286 0.76472 0.88087 0.88120 0.87932 0.87838 0.90075 0.87965 0.92322 0.87307 0.92515 0.87521 0.87952 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.54 5.60 -59.91 -0.34 -18.88 16 10 C 0.14 2.81 6.37 -4.04 -0.03 2.78 16 11 C 0.11 1.87 5.79 -4.05 -0.02 1.85 16 12 N -0.72 -9.57 5.55 -60.30 -0.33 -9.91 16 13 C 0.51 6.74 7.83 -10.99 -0.09 6.66 16 14 O -0.55 -9.13 15.98 5.55 0.09 -9.04 16 15 C -0.13 -1.22 4.99 -27.89 -0.14 -1.36 16 16 C -0.12 -1.09 3.36 -27.88 -0.09 -1.18 16 17 C 0.52 5.05 7.71 -10.98 -0.08 4.96 16 18 O -0.54 -6.88 15.45 5.55 0.09 -6.80 16 19 N -0.62 -4.82 3.01 -171.99 -0.52 -5.34 16 20 C 0.07 0.38 6.56 -3.31 -0.02 0.36 16 21 C 0.05 0.24 7.00 37.53 0.26 0.51 16 22 O -0.38 -2.76 10.74 -35.23 -0.38 -3.14 16 23 C 0.05 0.28 6.99 37.33 0.26 0.54 16 24 C 0.08 0.52 6.64 -3.51 -0.02 0.49 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.39 10.36 7.67 -40.82 -0.31 10.05 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.40 4.23 8.47 -40.82 -0.35 3.89 16 32 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.10 0.84 7.63 -51.93 -0.40 0.45 16 35 H 0.10 0.87 7.96 -51.93 -0.41 0.46 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.47 6.06 -51.93 -0.31 0.16 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 41 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.78 7.08 -51.93 -0.37 0.41 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -35.53 357.63 -7.29 -42.82 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.77 Total: 6.94 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -0.22 Total: 8.17 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.46 Total: -61.63 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.20 Total: -18.98 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.53 -7.29 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150052118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.701 kcal (2) G-P(sol) polarization free energy of solvation -35.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds