Wall clock time and date at job start Tue Mar 31 2020 05:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99831 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00453 * 3 2 1 5 5 H 1.48494 * 109.47103 * 30.00048 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00557 * 3 2 1 7 7 C 1.38811 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00534 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99483 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99804 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47250 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47400 * 180.02562 * 11 10 9 13 13 C 1.34770 * 120.00396 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00056 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00486 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47491 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.47159 * 179.97438 * 16 15 13 18 18 O 1.21283 * 120.00262 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99928 * 179.72352 * 17 16 15 20 20 C 1.47151 * 120.98153 * 359.97438 * 19 17 16 21 21 C 1.53717 * 108.16446 * 129.42886 * 20 19 17 22 22 O 1.42967 * 109.14561 * 52.53739 * 21 20 19 23 23 C 1.42962 * 114.16617 * 297.29050 * 22 21 20 24 24 C 1.47151 * 120.98263 * 180.27616 * 19 17 16 25 25 H 0.97000 * 120.00665 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00593 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.46866 * 60.00181 * 10 9 7 28 28 H 1.08994 * 109.46998 * 300.00383 * 10 9 7 29 29 H 1.09004 * 109.47066 * 60.00270 * 11 10 9 30 30 H 1.09000 * 109.47234 * 300.00778 * 11 10 9 31 31 H 0.97001 * 120.00043 * 0.02562 * 12 11 10 32 32 H 1.09004 * 109.46801 * 60.00195 * 15 13 12 33 33 H 1.09000 * 109.47461 * 300.00727 * 15 13 12 34 34 H 1.09004 * 109.47066 * 60.00201 * 16 15 13 35 35 H 1.08994 * 109.47405 * 300.00031 * 16 15 13 36 36 H 1.08997 * 109.67944 * 249.20758 * 20 19 17 37 37 H 1.09001 * 109.68346 * 9.76100 * 20 19 17 38 38 H 1.08998 * 109.65611 * 292.57311 * 21 20 19 39 39 H 1.08994 * 109.48424 * 172.39690 * 21 20 19 40 40 H 1.09008 * 109.51186 * 302.65841 * 23 22 21 41 41 H 1.08996 * 109.55507 * 182.53559 * 23 22 21 42 42 H 1.09000 * 109.68250 * 350.23937 * 24 19 17 43 43 H 1.09002 * 109.68088 * 110.79250 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 7 1.7965 -6.0884 -0.0026 13 6 1.1227 -7.2556 -0.0025 14 8 -0.0901 -7.2557 -0.0024 15 6 1.8762 -8.5607 -0.0024 16 6 0.8820 -9.7236 -0.0029 17 6 1.6356 -11.0287 -0.0035 18 8 2.8484 -11.0287 -0.0031 19 7 0.9617 -12.1959 0.0016 20 6 -0.5096 -12.2212 0.0083 21 6 -0.9779 -13.1588 -1.1161 22 8 -0.3211 -14.4212 -0.9779 23 6 1.1008 -14.3589 -1.1122 24 6 1.6756 -13.4827 0.0072 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6855 -3.7149 0.8879 28 1 2.6841 -3.7141 -0.8921 29 1 0.4370 -4.7614 -0.8918 30 1 0.4376 -4.7626 0.8881 31 1 2.7665 -6.0884 -0.0023 32 1 2.5028 -8.6183 0.8876 33 1 2.5029 -8.6185 -0.8923 34 1 0.2556 -9.6658 -0.8932 35 1 0.2550 -9.6661 0.8868 36 1 -0.8659 -12.5901 0.9701 37 1 -0.8948 -11.2164 -0.1656 38 1 -0.7297 -12.7233 -2.0839 39 1 -2.0564 -13.3000 -1.0461 40 1 1.3566 -13.9277 -2.0801 41 1 1.5184 -15.3630 -1.0393 42 1 2.7381 -13.3138 -0.1675 43 1 1.5351 -13.9762 0.9689 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150052118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:53 Heat of formation + Delta-G solvation = -134.199066 kcal Electronic energy + Delta-G solvation = -23449.098701 eV Core-core repulsion = 19721.504080 eV Total energy + Delta-G solvation = -3727.594621 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50783 -40.66113 -39.32352 -37.33906 -35.84911 -35.48268 -34.11034 -33.11535 -32.29913 -29.80577 -28.93007 -26.72005 -25.38564 -24.79116 -23.18106 -22.82920 -21.33377 -20.11264 -19.33028 -18.84546 -17.71058 -17.35242 -17.31118 -16.87864 -16.70274 -16.59885 -16.42475 -16.04913 -15.95936 -15.50598 -15.26605 -15.00005 -14.81563 -14.59658 -14.15590 -13.77170 -13.57359 -13.11048 -13.05032 -13.03806 -12.69121 -12.65818 -12.49385 -12.37413 -12.20222 -12.08621 -11.86866 -11.76668 -11.25863 -10.99554 -10.97724 -10.90314 -10.12814 -9.66246 -9.06898 -7.97380 -5.28694 1.48370 1.48545 1.50589 1.59049 1.61460 1.71540 2.18352 2.57981 2.85449 3.36239 3.36731 3.70092 3.77857 3.91980 3.99803 4.04684 4.05581 4.09092 4.19747 4.22141 4.23752 4.26894 4.46913 4.58729 4.61989 4.65695 4.74845 4.80815 4.84188 4.90534 4.92597 5.04494 5.13740 5.33497 5.39554 5.49129 6.08916 6.20243 6.23599 6.53392 7.00224 7.22256 7.29886 8.01816 8.24786 9.26151 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.049796 B = 0.001900 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.159217 B =14735.545075 C =15153.675789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.249 4.249 8 H 0.082 0.918 9 N -0.747 5.747 10 C 0.147 3.853 11 C 0.128 3.872 12 N -0.713 5.713 13 C 0.512 3.488 14 O -0.583 6.583 15 C -0.114 4.114 16 C -0.119 4.119 17 C 0.519 3.481 18 O -0.574 6.574 19 N -0.619 5.619 20 C 0.067 3.933 21 C 0.044 3.956 22 O -0.396 6.396 23 C 0.051 3.949 24 C 0.074 3.926 25 H 0.252 0.748 26 H 0.374 0.626 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.417 0.583 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.058 0.942 39 H 0.128 0.872 40 H 0.053 0.947 41 H 0.125 0.875 42 H 0.092 0.908 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.054 -31.722 -1.121 31.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.381 4.381 8 H 0.100 0.900 9 N -0.390 5.390 10 C 0.020 3.980 11 C 0.003 3.997 12 N -0.366 5.366 13 C 0.300 3.700 14 O -0.463 6.463 15 C -0.154 4.154 16 C -0.159 4.159 17 C 0.309 3.691 18 O -0.454 6.454 19 N -0.353 5.353 20 C -0.055 4.055 21 C -0.033 4.033 22 O -0.315 6.315 23 C -0.026 4.026 24 C -0.049 4.049 25 H 0.061 0.939 26 H 0.206 0.794 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.254 0.746 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.072 0.928 41 H 0.143 0.857 42 H 0.110 0.890 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.906 -31.791 -1.079 31.866 hybrid contribution 0.378 1.415 -0.012 1.465 sum 2.284 -30.376 -1.091 30.481 Atomic orbital electron populations 1.69828 1.06774 1.26298 1.59099 1.25673 0.96472 1.01458 1.03357 0.85056 0.77689 0.78991 0.77478 1.21293 1.22241 1.19127 1.19650 0.91724 0.84913 1.41766 0.89984 1.42425 1.05766 1.01081 1.89772 1.20864 0.93698 0.84224 0.99186 1.21138 0.94719 0.82672 1.01176 1.45787 1.11323 1.04836 1.74647 1.21114 0.87822 0.86223 0.74806 1.90693 1.15729 1.88346 1.51520 1.21318 0.98395 0.88751 1.06947 1.21366 0.98549 0.89417 1.06553 1.20915 0.87519 0.85963 0.74676 1.90689 1.15300 1.87794 1.51638 1.48267 1.08040 1.05754 1.73254 1.22793 0.78290 1.03222 1.01241 1.23226 0.99246 0.83718 0.97132 1.87961 1.19605 1.30642 1.93243 1.23059 0.80936 1.01822 0.96825 1.22378 0.98320 0.83438 1.00747 0.93881 0.79405 0.94577 0.94572 0.92715 0.92744 0.74623 0.87037 0.86995 0.87246 0.87315 0.89250 0.87011 0.92396 0.85436 0.92826 0.85677 0.88984 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.64 13.06 21.65 0.28 -59.36 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 3 Si 0.98 45.73 29.55 68.60 2.03 47.75 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 9 N -0.75 -37.91 5.60 -343.45 -1.92 -39.84 16 10 C 0.15 5.58 6.37 86.38 0.55 6.13 16 11 C 0.13 4.27 5.79 86.38 0.50 4.77 16 12 N -0.71 -17.85 5.55 -463.09 -2.57 -20.42 16 13 C 0.51 12.85 7.83 87.66 0.69 13.54 16 14 O -0.58 -19.02 15.98 -3.04 -0.05 -19.07 16 15 C -0.11 -2.02 4.99 29.85 0.15 -1.87 16 16 C -0.12 -1.91 3.36 29.85 0.10 -1.81 16 17 C 0.52 9.50 7.71 87.66 0.68 10.18 16 18 O -0.57 -14.23 15.45 -3.04 -0.05 -14.28 16 19 N -0.62 -8.85 3.01 -816.44 -2.46 -11.31 16 20 C 0.07 0.63 6.56 86.50 0.57 1.19 16 21 C 0.04 0.39 7.00 72.22 0.51 0.90 16 22 O -0.40 -5.13 10.74 -148.98 -1.60 -6.73 16 23 C 0.05 0.53 6.99 72.10 0.50 1.03 16 24 C 0.07 0.93 6.64 86.37 0.57 1.51 16 25 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 26 H 0.37 20.46 7.67 -92.71 -0.71 19.75 16 27 H 0.04 1.31 8.14 -2.38 -0.02 1.30 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.42 7.87 8.47 -92.71 -0.79 7.08 16 32 H 0.11 1.81 8.10 -2.38 -0.02 1.79 16 33 H 0.11 1.79 8.10 -2.39 -0.02 1.78 16 34 H 0.11 1.62 7.63 -2.38 -0.02 1.60 16 35 H 0.11 1.65 7.96 -2.39 -0.02 1.64 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 0.83 6.06 -2.39 -0.01 0.82 16 38 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.09 1.38 7.08 -2.39 -0.02 1.36 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -75.59 357.63 -0.69 -76.29 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -0.47 Total: 28.33 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 6.12 Total: 18.65 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -6.67 Total: -130.93 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -1.70 Total: -40.08 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -75.59 -0.69 -76.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150052118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.913 kcal (2) G-P(sol) polarization free energy of solvation -75.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds