Wall clock time and date at job start Tue Mar 31 2020 05:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00288 * 2 1 4 4 C 1.50696 * 109.47538 * 179.97438 * 3 2 1 5 5 O 1.21289 * 119.99822 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00366 * 179.97438 * 4 3 2 7 7 C 1.47423 * 125.64687 * 359.97438 * 6 4 3 8 8 C 1.54906 * 104.83327 * 204.16152 * 7 6 4 9 9 C 1.55156 * 101.58293 * 322.99325 * 8 7 6 10 10 H 1.08996 * 110.71771 * 276.95718 * 9 8 7 11 11 N 1.46906 * 110.72105 * 153.86273 * 9 8 7 12 12 C 1.46901 * 110.99793 * 86.45499 * 11 9 8 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 9 14 14 O 1.21294 * 119.99849 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99707 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99704 * 359.97438 * 16 15 13 18 18 C 1.38941 * 119.99927 * 180.02562 * 16 15 13 19 19 N 1.31417 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00273 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46986 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47457 * 119.99901 * 20 18 16 23 23 H 1.48501 * 109.47104 * 239.99973 * 20 18 16 24 24 C 1.47027 * 125.65026 * 180.02562 * 6 4 3 25 25 H 1.09001 * 109.88064 * 298.32249 * 24 6 4 26 26 C 1.53001 * 109.88037 * 59.48627 * 24 6 4 27 27 H 1.09002 * 109.47414 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47313 * 300.00185 * 1 2 3 29 29 H 1.09002 * 109.47117 * 60.00544 * 1 2 3 30 30 H 1.09002 * 109.47614 * 59.99683 * 3 2 1 31 31 H 1.09007 * 109.47048 * 299.99547 * 3 2 1 32 32 H 1.09001 * 110.36733 * 85.32528 * 7 6 4 33 33 H 1.09003 * 110.36810 * 323.00173 * 7 6 4 34 34 H 1.09002 * 111.00768 * 204.91567 * 8 7 6 35 35 H 1.09010 * 111.00202 * 81.06521 * 8 7 6 36 36 H 1.00898 * 110.99995 * 210.40577 * 11 9 8 37 37 H 1.09002 * 109.47401 * 59.99808 * 12 11 9 38 38 H 1.09001 * 109.46874 * 299.99821 * 12 11 9 39 39 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 40 40 H 0.97000 * 119.99884 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.46765 * 177.80901 * 26 24 6 42 42 H 1.09003 * 109.47419 * 297.80957 * 26 24 6 43 43 H 1.09003 * 109.46940 * 57.81309 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2765 2.2967 0.0002 7 6 3.7766 3.6836 -0.0014 8 6 4.9279 4.5194 -0.6142 9 6 6.1757 3.8075 -0.0283 10 1 6.3896 4.1695 0.9773 11 7 7.3400 3.9944 -0.9045 12 6 8.0399 5.2470 -0.5898 13 6 9.2259 5.4037 -1.5063 14 8 9.4643 4.5555 -2.3400 15 7 10.0210 6.4867 -1.4003 16 6 11.0997 6.6295 -2.2345 17 1 11.3124 5.8738 -2.9762 18 6 11.9197 7.7457 -2.1249 19 7 11.6611 8.6650 -1.2220 20 14 13.3890 7.9406 -3.2619 21 1 13.4603 6.7775 -4.1823 22 1 13.2414 9.1893 -4.0519 23 1 14.6336 8.0097 -2.4549 24 6 5.7465 2.3254 0.0002 25 1 6.1266 1.8468 0.9027 26 6 6.2809 1.6047 -1.2391 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.5688 4.0132 1.0166 33 1 2.8806 3.7632 -0.6171 34 1 4.8777 5.5564 -0.2819 35 1 4.9184 4.4587 -1.7025 36 1 7.9666 3.2057 -0.8465 37 1 8.3816 5.2223 0.4449 38 1 7.3600 6.0877 -0.7280 39 1 9.8301 7.1652 -0.7339 40 1 12.2334 9.4444 -1.1458 41 1 7.3692 1.6637 -1.2525 42 1 5.9740 0.5592 -1.2120 43 1 5.8804 2.0780 -2.1356 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177973356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:01 Heat of formation + Delta-G solvation = -99.339821 kcal Electronic energy + Delta-G solvation = -24278.773501 eV Core-core repulsion = 20552.690490 eV Total energy + Delta-G solvation = -3726.083011 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.55661 -38.74829 -38.07193 -37.25510 -34.81771 -33.82622 -31.57963 -31.21896 -30.91368 -28.81557 -26.75093 -26.15971 -25.21547 -23.81973 -23.13998 -20.28609 -19.38966 -19.17791 -17.93921 -17.63827 -16.88603 -16.67474 -16.18255 -15.80083 -15.73212 -15.32866 -14.87775 -14.49364 -14.26829 -13.98011 -13.72664 -13.57060 -13.28289 -13.11610 -12.69379 -12.42807 -12.35857 -12.15465 -11.95682 -11.84603 -11.60890 -11.50841 -11.38850 -11.11606 -10.93045 -10.68565 -10.35462 -10.24127 -10.19121 -9.86312 -9.53832 -8.87401 -8.49713 -8.14713 -7.98163 -6.43718 -3.84462 2.39016 2.42109 3.15251 3.26119 3.33465 3.58431 3.88341 4.03533 4.15220 4.27254 4.40666 4.53904 4.68240 4.74590 4.92191 4.93841 4.96086 4.98772 5.08304 5.20139 5.22636 5.27310 5.28551 5.45892 5.52481 5.60168 5.75001 5.81755 5.93207 6.03226 6.10095 6.23035 6.25008 6.49042 6.61567 7.14439 7.28069 7.53888 7.56843 7.98305 8.04618 8.59034 9.16206 9.52174 10.03379 10.74033 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.048736 B = 0.002363 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.386804 B =11845.010044 C =12153.637275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.529 3.471 5 O -0.516 6.516 6 N -0.612 5.612 7 C 0.095 3.905 8 C -0.123 4.123 9 C 0.076 3.924 10 H 0.059 0.941 11 N -0.655 5.655 12 C 0.049 3.951 13 C 0.441 3.559 14 O -0.582 6.582 15 N -0.564 5.564 16 C -0.298 4.298 17 H 0.104 0.896 18 C 0.021 3.979 19 N -0.902 5.902 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.139 3.861 25 H 0.075 0.925 26 C -0.155 4.155 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.354 0.646 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.313 -7.226 6.590 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.317 3.683 5 O -0.391 6.391 6 N -0.349 5.349 7 C -0.028 4.028 8 C -0.161 4.161 9 C -0.035 4.035 10 H 0.077 0.923 11 N -0.290 5.290 12 C -0.083 4.083 13 C 0.226 3.774 14 O -0.466 6.466 15 N -0.200 5.200 16 C -0.428 4.428 17 H 0.122 0.878 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.208 1.208 24 C 0.035 3.965 25 H 0.093 0.907 26 C -0.213 4.213 27 H 0.110 0.890 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.177 0.823 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.051 -8.216 5.556 23.270 hybrid contribution 0.777 0.908 0.801 1.438 sum -20.275 -7.308 6.357 22.469 Atomic orbital electron populations 1.22844 0.80311 1.03371 1.00131 1.88016 1.19817 1.25249 1.95413 1.22209 0.91558 0.86880 1.02509 1.19833 0.88196 0.83332 0.76977 1.90735 1.74362 1.25806 1.48193 1.48450 1.06924 1.05762 1.73806 1.22439 0.98178 0.81124 1.01029 1.22878 0.92263 0.98600 1.02382 1.22558 0.92442 0.93384 0.95087 0.92268 1.60367 1.10285 1.05098 1.53281 1.21733 0.95848 0.93581 0.97164 1.19784 0.85479 0.84450 0.87696 1.90535 1.73963 1.43190 1.38931 1.41867 1.24979 1.19776 1.33421 1.19756 1.02688 1.06359 1.13981 0.87843 1.25265 0.99520 0.95492 0.97726 1.69620 1.39698 1.10787 1.34226 0.85797 0.80452 0.78382 0.79707 1.19201 1.20748 1.20780 1.21616 0.79263 0.95842 0.99728 0.90743 1.22001 1.01649 1.00628 0.97050 0.89035 0.93807 0.93752 0.90340 0.90223 0.91070 0.90497 0.89821 0.89088 0.82260 0.93748 0.89534 0.77477 0.91929 0.90901 0.91693 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.37 -4.02 10.24 -55.14 -0.56 -4.59 16 3 C 0.05 0.42 5.42 36.00 0.20 0.62 16 4 C 0.53 6.58 7.71 -10.99 -0.08 6.50 16 5 O -0.52 -8.71 15.40 -14.36 -0.22 -8.93 16 6 N -0.61 -6.59 3.08 -163.02 -0.50 -7.09 16 7 C 0.10 0.71 6.69 -2.53 -0.02 0.70 16 8 C -0.12 -1.15 6.71 -24.58 -0.16 -1.31 16 9 C 0.08 0.87 3.11 -65.88 -0.21 0.66 16 10 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 11 N -0.65 -9.84 5.21 -106.05 -0.55 -10.39 16 12 C 0.05 0.81 6.02 -4.97 -0.03 0.78 16 13 C 0.44 10.10 7.82 -10.98 -0.09 10.01 16 14 O -0.58 -15.51 15.78 5.55 0.09 -15.42 16 15 N -0.56 -14.00 5.29 -10.96 -0.06 -14.05 16 16 C -0.30 -8.23 9.68 -14.94 -0.14 -8.38 16 17 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 19 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 20 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 C 0.14 1.66 3.41 -66.95 -0.23 1.43 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 C -0.16 -2.11 8.40 37.16 0.31 -1.80 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.52 7.85 -51.93 -0.41 0.11 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.42 7.47 -51.93 -0.39 0.03 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 36 H 0.35 5.66 6.14 -39.29 -0.24 5.42 16 37 H 0.04 0.66 8.09 -51.93 -0.42 0.24 16 38 H 0.09 1.29 8.13 -51.93 -0.42 0.87 16 39 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.07 1.01 6.23 -51.93 -0.32 0.68 16 42 H 0.06 0.97 6.76 -51.93 -0.35 0.62 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -34.45 355.63 -6.79 -41.24 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.60 Total: 10.53 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 0.56 Total: 10.99 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.39 Total: -55.07 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.70 Total: -28.95 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.45 -6.79 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177973356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.101 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds