Wall clock time and date at job start Tue Mar 31 2020 05:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00288 * 2 1 4 4 C 1.50696 * 109.47538 * 179.97438 * 3 2 1 5 5 O 1.21289 * 119.99822 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00366 * 179.97438 * 4 3 2 7 7 C 1.47423 * 125.64687 * 359.97438 * 6 4 3 8 8 C 1.54906 * 104.83327 * 204.16152 * 7 6 4 9 9 C 1.55156 * 101.58293 * 322.99325 * 8 7 6 10 10 H 1.08996 * 110.71771 * 276.95718 * 9 8 7 11 11 N 1.46906 * 110.72105 * 153.86273 * 9 8 7 12 12 C 1.46901 * 110.99793 * 86.45499 * 11 9 8 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 9 14 14 O 1.21294 * 119.99849 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99707 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99704 * 359.97438 * 16 15 13 18 18 C 1.38941 * 119.99927 * 180.02562 * 16 15 13 19 19 N 1.31417 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00273 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46986 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47457 * 119.99901 * 20 18 16 23 23 H 1.48501 * 109.47104 * 239.99973 * 20 18 16 24 24 C 1.47027 * 125.65026 * 180.02562 * 6 4 3 25 25 H 1.09001 * 109.88064 * 298.32249 * 24 6 4 26 26 C 1.53001 * 109.88037 * 59.48627 * 24 6 4 27 27 H 1.09002 * 109.47414 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47313 * 300.00185 * 1 2 3 29 29 H 1.09002 * 109.47117 * 60.00544 * 1 2 3 30 30 H 1.09002 * 109.47614 * 59.99683 * 3 2 1 31 31 H 1.09007 * 109.47048 * 299.99547 * 3 2 1 32 32 H 1.09001 * 110.36733 * 85.32528 * 7 6 4 33 33 H 1.09003 * 110.36810 * 323.00173 * 7 6 4 34 34 H 1.09002 * 111.00768 * 204.91567 * 8 7 6 35 35 H 1.09010 * 111.00202 * 81.06521 * 8 7 6 36 36 H 1.00898 * 110.99995 * 210.40577 * 11 9 8 37 37 H 1.09002 * 109.47401 * 59.99808 * 12 11 9 38 38 H 1.09001 * 109.46874 * 299.99821 * 12 11 9 39 39 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 40 40 H 0.97000 * 119.99884 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.46765 * 177.80901 * 26 24 6 42 42 H 1.09003 * 109.47419 * 297.80957 * 26 24 6 43 43 H 1.09003 * 109.46940 * 57.81309 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2765 2.2967 0.0002 7 6 3.7766 3.6836 -0.0014 8 6 4.9279 4.5194 -0.6142 9 6 6.1757 3.8075 -0.0283 10 1 6.3896 4.1695 0.9773 11 7 7.3400 3.9944 -0.9045 12 6 8.0399 5.2470 -0.5898 13 6 9.2259 5.4037 -1.5063 14 8 9.4643 4.5555 -2.3400 15 7 10.0210 6.4867 -1.4003 16 6 11.0997 6.6295 -2.2345 17 1 11.3124 5.8738 -2.9762 18 6 11.9197 7.7457 -2.1249 19 7 11.6611 8.6650 -1.2220 20 14 13.3890 7.9406 -3.2619 21 1 13.4603 6.7775 -4.1823 22 1 13.2414 9.1893 -4.0519 23 1 14.6336 8.0097 -2.4549 24 6 5.7465 2.3254 0.0002 25 1 6.1266 1.8468 0.9027 26 6 6.2809 1.6047 -1.2391 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.5688 4.0132 1.0166 33 1 2.8806 3.7632 -0.6171 34 1 4.8777 5.5564 -0.2819 35 1 4.9184 4.4587 -1.7025 36 1 7.9666 3.2057 -0.8465 37 1 8.3816 5.2223 0.4449 38 1 7.3600 6.0877 -0.7280 39 1 9.8301 7.1652 -0.7339 40 1 12.2334 9.4444 -1.1458 41 1 7.3692 1.6637 -1.2525 42 1 5.9740 0.5592 -1.2120 43 1 5.8804 2.0780 -2.1356 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177973356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:00 Heat of formation + Delta-G solvation = -126.015589 kcal Electronic energy + Delta-G solvation = -24279.930249 eV Core-core repulsion = 20552.690490 eV Total energy + Delta-G solvation = -3727.239759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45052 -40.16118 -39.27276 -38.13305 -36.20060 -35.56986 -33.27664 -32.49669 -31.86038 -29.56048 -28.13724 -26.80442 -26.50761 -25.29217 -23.94046 -21.24955 -21.00517 -20.16710 -19.89844 -18.46819 -17.85234 -17.59022 -17.27647 -16.90747 -16.68437 -16.53224 -16.32048 -15.88065 -15.56194 -15.31368 -14.97142 -14.44289 -14.39030 -14.15714 -13.93405 -13.50731 -13.43902 -13.31739 -13.19781 -13.05292 -12.88866 -12.62375 -12.43937 -12.39322 -12.28899 -12.11843 -11.84813 -11.62999 -11.50373 -10.83185 -10.75940 -10.32524 -9.99968 -9.74550 -9.34509 -8.46213 -5.94326 1.36787 1.42389 1.52270 1.56028 1.63060 2.07318 2.29740 2.89375 3.00412 3.21522 3.35103 3.52653 3.67185 3.74585 4.03272 4.14564 4.22164 4.27872 4.32244 4.33143 4.45517 4.51090 4.53589 4.58439 4.60728 4.65030 4.70673 4.75541 4.88091 5.00854 5.06311 5.25782 5.28829 5.38578 5.42425 5.90499 6.06167 6.11909 6.33004 6.47962 6.61673 7.10301 7.14260 7.58265 8.13996 8.71273 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.048736 B = 0.002363 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.386804 B =11845.010044 C =12153.637275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.053 3.947 4 C 0.519 3.481 5 O -0.575 6.575 6 N -0.610 5.610 7 C 0.097 3.903 8 C -0.120 4.120 9 C 0.080 3.920 10 H 0.080 0.920 11 N -0.670 5.670 12 C 0.066 3.934 13 C 0.437 3.563 14 O -0.625 6.625 15 N -0.573 5.573 16 C -0.332 4.332 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.919 5.919 20 Si 0.991 3.009 21 H -0.275 1.275 22 H -0.271 1.271 23 H -0.271 1.271 24 C 0.138 3.862 25 H 0.069 0.931 26 C -0.145 4.145 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.345 0.655 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.235 -5.398 7.692 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.026 4.026 4 C 0.308 3.692 5 O -0.454 6.454 6 N -0.345 5.345 7 C -0.025 4.025 8 C -0.159 4.159 9 C -0.031 4.031 10 H 0.098 0.902 11 N -0.305 5.305 12 C -0.066 4.066 13 C 0.225 3.775 14 O -0.511 6.511 15 N -0.211 5.211 16 C -0.462 4.462 17 H 0.095 0.905 18 C -0.213 4.213 19 N -0.560 5.560 20 Si 0.815 3.185 21 H -0.200 1.200 22 H -0.196 1.196 23 H -0.197 1.197 24 C 0.034 3.966 25 H 0.087 0.913 26 C -0.203 4.203 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.167 0.833 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.019 -6.328 6.685 24.791 hybrid contribution 1.333 0.302 0.455 1.440 sum -21.686 -6.026 7.139 23.613 Atomic orbital electron populations 1.23040 0.78120 1.04163 1.01754 1.87962 1.22296 1.26834 1.95798 1.22329 0.88407 0.86680 1.05200 1.20686 0.89999 0.82716 0.75769 1.90704 1.75653 1.28056 1.51018 1.48530 1.06209 1.07087 1.72709 1.22714 0.98194 0.78386 1.03190 1.22894 0.91686 0.99995 1.01288 1.22641 0.91687 0.93084 0.95646 0.90192 1.60383 1.10870 1.04154 1.55049 1.21587 0.93533 0.95130 0.96361 1.20944 0.86237 0.82844 0.87499 1.90507 1.75269 1.44409 1.40944 1.41923 1.24986 1.20688 1.33468 1.19673 1.04767 1.06731 1.14987 0.90512 1.25999 1.01559 0.94776 0.98930 1.69669 1.40527 1.11002 1.34812 0.84898 0.77515 0.78187 0.77905 1.19996 1.19582 1.19662 1.21517 0.80597 0.96180 0.98291 0.91255 1.21856 1.01100 0.99611 0.97755 0.88864 0.91940 0.92240 0.87048 0.87592 0.88159 0.87734 0.87565 0.91022 0.83328 0.91295 0.87080 0.76864 0.91324 0.91722 0.93629 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -8.48 10.24 -129.94 -1.33 -9.81 16 3 C 0.05 0.79 5.42 71.23 0.39 1.17 16 4 C 0.52 12.44 7.71 87.66 0.68 13.12 16 5 O -0.58 -20.07 15.40 15.98 0.25 -19.82 16 6 N -0.61 -12.02 3.08 -788.05 -2.43 -14.45 16 7 C 0.10 1.05 6.69 86.85 0.58 1.63 16 8 C -0.12 -1.85 6.71 31.98 0.21 -1.64 16 9 C 0.08 1.64 3.11 46.10 0.14 1.78 16 10 H 0.08 1.38 7.89 -2.39 -0.02 1.36 16 11 N -0.67 -19.53 5.21 -489.44 -2.55 -22.08 16 12 C 0.07 2.06 6.02 85.56 0.52 2.58 16 13 C 0.44 20.15 7.82 87.66 0.69 20.84 16 14 O -0.62 -34.25 15.78 -3.07 -0.05 -34.30 16 15 N -0.57 -28.70 5.29 -306.98 -1.62 -30.33 16 16 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 17 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 18 C -0.01 -0.68 5.50 84.92 0.47 -0.22 16 19 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 20 Si 0.99 42.77 29.55 68.60 2.03 44.79 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 C 0.14 3.22 3.41 45.34 0.15 3.38 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 C -0.14 -4.14 8.40 71.98 0.60 -3.53 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 0.99 7.85 -2.38 -0.02 0.97 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.63 7.47 -2.39 -0.02 0.61 16 34 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.34 11.16 6.14 -89.70 -0.55 10.61 16 37 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 38 H 0.11 2.98 8.13 -2.39 -0.02 2.96 16 39 H 0.40 18.69 7.90 -92.71 -0.73 17.95 16 40 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.06 1.91 6.23 -2.39 -0.01 1.89 16 42 H 0.04 1.46 6.76 -2.39 -0.02 1.44 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -78.66 355.63 0.81 -77.84 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -0.25 Total: 33.95 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 6.49 Total: 22.74 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -6.32 Total: -115.39 kcal Atomic # 8 Polarization: -62.80 SS G_CDS: -1.13 Total: -63.94 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -78.66 0.81 -77.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177973356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.172 kcal (2) G-P(sol) polarization free energy of solvation -78.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds