Wall clock time and date at job start Tue Mar 31 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47322 * 2 1 4 4 C 1.50703 * 109.47261 * 180.02562 * 3 2 1 5 5 O 1.21273 * 119.99931 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00072 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00181 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47257 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27849 * 8 7 6 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 H 1.09001 * 110.88924 * 31.12203 * 11 10 8 13 13 C 1.54903 * 111.00492 * 267.19203 * 11 10 8 14 14 N 1.47426 * 104.83511 * 204.91837 * 13 11 10 15 15 C 1.36937 * 125.65061 * 204.17470 * 14 13 11 16 16 H 1.07998 * 119.99990 * 359.97238 * 15 14 13 17 17 C 1.38818 * 120.00128 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99809 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00068 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46952 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46861 * 119.99913 * 19 17 15 22 22 H 1.48500 * 109.46786 * 240.00002 * 19 17 15 23 23 C 1.47021 * 108.70152 * 24.12916 * 14 13 11 24 24 C 1.54322 * 107.27186 * 358.93969 * 23 14 13 25 25 H 1.09002 * 110.72278 * 219.44386 * 24 23 14 26 26 O 1.42904 * 110.71942 * 96.17156 * 24 23 14 27 27 H 1.09002 * 109.46916 * 299.99711 * 1 2 3 28 28 H 1.08998 * 109.47285 * 60.00153 * 1 2 3 29 29 H 1.08996 * 109.47095 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46887 * 239.99330 * 2 1 3 31 31 H 1.09007 * 109.46700 * 119.99873 * 2 1 3 32 32 H 1.09000 * 109.47686 * 59.99820 * 3 2 1 33 33 H 1.09006 * 109.46660 * 299.99860 * 3 2 1 34 34 H 0.97002 * 120.00040 * 359.97438 * 6 4 3 35 35 H 1.09009 * 109.46700 * 59.99666 * 7 6 4 36 36 H 1.08998 * 109.46827 * 300.00240 * 7 6 4 37 37 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 38 38 H 1.08998 * 110.36652 * 323.75794 * 13 11 10 39 39 H 1.08995 * 110.36765 * 86.08114 * 13 11 10 40 40 H 0.96993 * 119.99796 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.88340 * 239.52107 * 23 14 13 42 42 H 1.08999 * 110.01172 * 118.43335 * 23 14 13 43 43 H 0.96696 * 113.99995 * 66.47873 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2210 2.6096 -0.0013 7 6 5.6860 2.6096 -0.0013 8 6 6.1883 4.0304 -0.0027 9 8 5.4002 4.9522 -0.0040 10 7 7.5134 4.2766 -0.0087 11 6 8.0017 5.6577 -0.0161 12 1 7.3113 6.3169 0.5102 13 6 8.2482 6.1518 -1.4634 14 7 9.2562 7.2194 -1.3313 15 6 9.4528 8.2454 -2.2166 16 1 8.8398 8.3189 -3.1027 17 6 10.4399 9.1911 -1.9751 18 7 11.1873 9.1012 -0.8954 19 14 10.7085 10.5904 -3.1831 20 1 9.7467 10.4650 -4.3075 21 1 10.4971 11.8879 -2.4925 22 1 12.0957 10.5301 -3.7098 23 6 10.0149 7.0006 -0.0911 24 6 9.4271 5.7470 0.5905 25 1 9.3786 5.8824 1.6710 26 8 10.1913 4.5859 0.2588 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6768 1.9563 0.8899 33 1 1.6767 1.9562 -0.8901 34 1 3.7360 3.4496 -0.0017 35 1 6.0492 2.0952 -0.8911 36 1 6.0493 2.0962 0.8889 37 1 8.1437 3.5392 -0.0079 38 1 8.6336 5.3403 -2.0807 39 1 7.3277 6.5499 -1.8902 40 1 11.8768 9.7621 -0.7264 41 1 9.9085 7.8640 0.5658 42 1 11.0677 6.8379 -0.3216 43 1 11.0905 4.5922 0.6142 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219291550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:00 Heat of formation + Delta-G solvation = -132.422471 kcal Electronic energy + Delta-G solvation = -24152.579978 eV Core-core repulsion = 20425.062397 eV Total energy + Delta-G solvation = -3727.517582 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39350 -40.52515 -39.41848 -36.46176 -35.72802 -35.42710 -35.19523 -33.63657 -30.80397 -29.88688 -28.83595 -27.50832 -26.18319 -22.96406 -22.39797 -21.88328 -21.49888 -21.27112 -19.33203 -18.69220 -18.36419 -17.36604 -17.16062 -17.13156 -16.85938 -16.33714 -16.32834 -15.77462 -15.33113 -15.11749 -14.79781 -14.59968 -14.44996 -14.25133 -14.02977 -13.88366 -13.63046 -13.19707 -12.84394 -12.80163 -12.77459 -12.64434 -12.28847 -12.10157 -12.00735 -11.96611 -11.89157 -11.59921 -11.14889 -10.97622 -10.86380 -10.78222 -10.27545 -10.10216 -8.95897 -7.90029 -5.25744 1.42867 1.45596 1.45830 1.56203 1.62329 1.72632 2.38931 2.49723 3.16708 3.29337 3.49858 3.68908 3.81376 3.87537 3.93447 4.05098 4.14474 4.25741 4.32155 4.35423 4.49140 4.61375 4.65277 4.72809 4.79563 4.81901 4.94134 4.99614 5.21611 5.29946 5.30625 5.34181 5.41230 5.47160 5.49482 5.64939 6.13589 6.45459 6.48705 6.85909 7.05628 7.11706 7.18322 7.69913 8.32979 9.20010 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.030157 B = 0.002530 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.240273 B =11064.806409 C =11711.337471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.135 4.135 4 C 0.512 3.488 5 O -0.582 6.582 6 N -0.717 5.717 7 C 0.107 3.893 8 C 0.510 3.490 9 O -0.573 6.573 10 N -0.691 5.691 11 C 0.152 3.848 12 H 0.097 0.903 13 C 0.131 3.869 14 N -0.622 5.622 15 C -0.244 4.244 16 H 0.078 0.922 17 C -0.062 4.062 18 N -0.948 5.948 19 Si 0.980 3.020 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.159 3.841 24 C 0.091 3.909 25 H 0.092 0.908 26 O -0.564 6.564 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.416 0.584 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.422 0.578 38 H 0.026 0.974 39 H 0.031 0.969 40 H 0.249 0.751 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.779 -16.065 5.593 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.174 4.174 4 C 0.300 3.700 5 O -0.462 6.462 6 N -0.373 5.373 7 C -0.020 4.020 8 C 0.297 3.703 9 O -0.453 6.453 10 N -0.343 5.343 11 C 0.045 3.955 12 H 0.115 0.885 13 C 0.004 3.996 14 N -0.349 5.349 15 C -0.373 4.373 16 H 0.096 0.904 17 C -0.256 4.256 18 N -0.597 5.597 19 Si 0.808 3.192 20 H -0.194 1.194 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.033 3.967 24 C 0.031 3.969 25 H 0.110 0.890 26 O -0.373 6.373 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.255 0.745 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.260 0.740 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -15.304 -16.147 5.261 22.862 hybrid contribution 1.328 1.384 -0.415 1.962 sum -13.977 -14.763 4.847 20.900 Atomic orbital electron populations 1.21768 0.93824 1.02397 1.02663 1.21262 0.96626 0.94561 1.02255 1.21779 0.88587 1.00496 1.06579 1.21386 0.91814 0.82366 0.74396 1.90690 1.71540 1.32513 1.51439 1.45846 1.05949 1.10199 1.75264 1.21033 0.82596 0.92408 1.06011 1.20904 0.82541 0.91637 0.75215 1.90697 1.55859 1.47134 1.51613 1.45498 1.06758 1.08576 1.73425 1.21971 0.93565 0.83621 0.96296 0.88504 1.21896 0.91497 0.90677 0.95527 1.44565 1.38492 1.27726 1.24111 1.19447 1.14526 1.01781 1.01548 0.90447 1.25621 0.98361 1.01653 0.99931 1.70114 1.24231 1.37393 1.27969 0.84992 0.77383 0.78639 0.78194 1.19380 1.21645 1.21682 1.21726 0.94395 0.93644 0.86925 1.23147 0.90053 0.85612 0.98100 0.89027 1.86203 1.30455 1.40411 1.80230 0.91749 0.91876 0.92239 0.92684 0.92515 0.86619 0.86843 0.74512 0.87444 0.86855 0.74030 0.95633 0.95028 0.94145 0.95732 0.95636 0.75046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.11 -1.52 5.22 30.59 0.16 -1.36 16 3 C -0.13 -1.70 5.70 29.85 0.17 -1.53 16 4 C 0.51 10.25 7.83 87.66 0.69 10.93 16 5 O -0.58 -15.92 15.98 -3.01 -0.05 -15.96 16 6 N -0.72 -13.85 5.53 -466.79 -2.58 -16.43 16 7 C 0.11 2.11 6.15 85.63 0.53 2.64 16 8 C 0.51 13.13 7.90 87.66 0.69 13.82 16 9 O -0.57 -18.65 15.31 -3.04 -0.05 -18.69 16 10 N -0.69 -18.12 5.17 -435.97 -2.25 -20.37 16 11 C 0.15 5.21 3.30 46.38 0.15 5.36 16 12 H 0.10 3.56 7.54 -2.39 -0.02 3.54 16 13 C 0.13 5.57 6.92 86.85 0.60 6.17 16 14 N -0.62 -31.97 3.39 -692.00 -2.35 -34.32 16 15 C -0.24 -13.82 10.28 84.03 0.86 -12.95 16 16 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 17 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 18 N -0.95 -55.46 10.31 21.65 0.22 -55.23 16 19 Si 0.98 45.64 29.55 68.60 2.03 47.66 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 C 0.16 7.37 5.14 86.73 0.45 7.81 16 24 C 0.09 3.01 4.20 31.78 0.13 3.15 16 25 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 26 O -0.56 -15.82 12.14 -148.98 -1.81 -17.63 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 31 H 0.06 0.93 8.10 -2.38 -0.02 0.91 16 32 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.42 7.64 7.44 -92.71 -0.69 6.95 16 35 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.42 9.34 7.59 -92.71 -0.70 8.63 16 38 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.02 1.28 7.38 -2.38 -0.02 1.26 16 42 H 0.03 1.31 7.43 -2.39 -0.02 1.29 16 43 H 0.40 8.36 9.12 -74.06 -0.68 7.69 16 Total: -1.00 -73.89 357.01 -2.25 -76.15 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -1.03 Total: 24.57 kcal Atomic # 6 Polarization: 24.65 SS G_CDS: 5.61 Total: 30.26 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -6.96 Total: -126.35 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -1.90 Total: -52.29 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -73.89 -2.25 -76.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219291550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.277 kcal (2) G-P(sol) polarization free energy of solvation -73.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds