Wall clock time and date at job start Tue Mar 31 2020 04:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00089 * 2 1 4 4 H 1.48496 * 109.47329 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47077 * 300.00139 * 3 2 1 6 6 H 1.48504 * 109.47058 * 59.99893 * 3 2 1 7 7 C 1.38948 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00027 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99851 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00012 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47467 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00431 * 180.02562 * 13 12 10 15 15 O 1.21593 * 119.99894 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00097 * 179.72742 * 14 13 12 17 17 C 1.46504 * 119.99854 * 180.27545 * 16 14 13 18 18 C 1.53004 * 109.46928 * 179.97438 * 17 16 14 19 19 H 1.09000 * 109.46819 * 304.99625 * 18 17 16 20 20 C 1.52995 * 109.46950 * 64.99606 * 18 17 16 21 21 C 1.53004 * 109.46609 * 180.02562 * 20 18 17 22 22 C 1.53002 * 109.47059 * 299.99913 * 21 20 18 23 23 C 1.52995 * 109.46995 * 60.00379 * 22 21 20 24 24 H 1.09000 * 109.47390 * 59.99748 * 23 22 21 25 25 O 1.42903 * 109.46949 * 179.97438 * 23 22 21 26 26 C 1.52994 * 109.46829 * 185.00128 * 18 17 16 27 27 H 0.96995 * 120.00047 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00500 * 359.97438 * 9 7 2 29 29 H 1.09009 * 109.47290 * 59.99894 * 12 10 9 30 30 H 1.08998 * 109.47607 * 300.00318 * 12 10 9 31 31 H 0.97000 * 119.99456 * 359.97438 * 13 12 10 32 32 H 0.97000 * 119.99736 * 0.26819 * 16 14 13 33 33 H 1.08998 * 109.46968 * 299.99782 * 17 16 14 34 34 H 1.08997 * 109.47198 * 59.99605 * 17 16 14 35 35 H 1.08993 * 109.47306 * 299.99495 * 20 18 17 36 36 H 1.09000 * 109.47344 * 60.00341 * 20 18 17 37 37 H 1.09002 * 109.47253 * 180.02562 * 21 20 18 38 38 H 1.09000 * 109.47124 * 60.00041 * 21 20 18 39 39 H 1.09000 * 109.47257 * 300.00046 * 22 21 20 40 40 H 1.09001 * 109.47241 * 180.02562 * 22 21 20 41 41 H 0.96694 * 114.00067 * 299.99430 * 25 23 22 42 42 H 1.09000 * 109.47010 * 299.99380 * 26 18 17 43 43 H 1.09002 * 109.47806 * 59.99697 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1959 -5.9765 -0.0007 14 6 1.7467 -7.2471 -0.0009 15 8 0.5512 -7.4694 0.0001 16 7 2.6225 -8.2715 -0.0071 17 6 2.1342 -9.6527 -0.0134 18 6 3.3242 -10.6144 -0.0203 19 1 3.9758 -10.3800 -0.8621 20 6 4.1062 -10.4674 1.2864 21 6 5.2966 -11.4286 1.2791 22 6 4.7904 -12.8664 1.1466 23 6 4.0083 -13.0133 -0.1601 24 1 4.6598 -12.7784 -1.0019 25 8 3.5360 -14.3563 -0.2842 26 6 2.8174 -12.0519 -0.1526 27 1 -0.4850 0.8400 0.0004 28 1 0.3534 -2.3907 0.0002 29 1 0.6168 -4.9209 -0.8897 30 1 0.6175 -4.9205 0.8902 31 1 3.1495 -5.7992 -0.0018 32 1 3.5762 -8.0942 -0.0075 33 1 1.5298 -9.8284 0.8765 34 1 1.5274 -9.8196 -0.9034 35 1 4.4673 -9.4433 1.3805 36 1 3.4547 -10.7018 2.1282 37 1 5.8536 -11.3243 2.2102 38 1 5.9481 -11.1938 0.4373 39 1 4.1389 -13.1012 1.9883 40 1 5.6384 -13.5512 1.1418 41 1 4.2384 -15.0207 -0.2959 42 1 2.1658 -12.2863 0.6891 43 1 2.2602 -12.1566 -1.0836 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261100504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:26 Heat of formation + Delta-G solvation = -144.154115 kcal Electronic energy + Delta-G solvation = -23664.100005 eV Core-core repulsion = 19936.073701 eV Total energy + Delta-G solvation = -3728.026304 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.10593 -39.32422 -38.17722 -36.51286 -34.51854 -34.28444 -33.62208 -31.61078 -31.33005 -29.86138 -27.74242 -25.71359 -24.28060 -22.84284 -21.75445 -20.70668 -20.21262 -19.56949 -18.42443 -17.98852 -17.39081 -16.34087 -15.84357 -15.65736 -15.47186 -14.94800 -14.85890 -14.65415 -14.48451 -14.13270 -13.98243 -13.79192 -13.50379 -13.20785 -12.93188 -12.52768 -12.33817 -12.16709 -11.88127 -11.73878 -11.62953 -11.45281 -11.14178 -11.06791 -10.96026 -10.60485 -10.40750 -10.32356 -10.15562 -10.02084 -9.64177 -9.13632 -8.61706 -8.57531 -8.09298 -6.50847 -3.92810 2.81973 3.10507 3.22669 3.29406 3.43017 3.72761 3.76129 4.09869 4.20525 4.25288 4.47743 4.57141 4.65823 4.77787 4.86778 4.91752 4.97995 5.04506 5.12035 5.17956 5.22844 5.45287 5.56381 5.58037 5.68555 5.73130 5.76702 5.80191 5.89398 5.95089 6.02476 6.06275 6.09574 6.52455 6.77454 7.11090 7.23313 7.46762 7.93380 8.25770 8.46021 8.82137 9.05415 9.40481 9.88314 10.66152 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.043121 B = 0.002103 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.186956 B =13308.050111 C =13781.335603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.704 3.296 15 O -0.598 6.598 16 N -0.749 5.749 17 C 0.146 3.854 18 C -0.096 4.096 19 H 0.080 0.920 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.152 4.152 23 C 0.106 3.894 24 H 0.055 0.945 25 O -0.569 6.569 26 C -0.105 4.105 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.406 0.594 32 H 0.396 0.604 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.377 0.623 42 H 0.074 0.926 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.410 -24.148 0.900 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.185 5.185 10 C 0.215 3.785 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.382 5.382 14 C 0.403 3.597 15 O -0.477 6.477 16 N -0.405 5.405 17 C 0.022 3.978 18 C -0.115 4.115 19 H 0.098 0.902 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.190 4.190 23 C 0.047 3.953 24 H 0.073 0.927 25 O -0.375 6.375 26 C -0.143 4.143 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.243 0.757 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.224 0.776 42 H 0.093 0.907 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.370 -23.837 0.893 24.966 hybrid contribution 1.224 0.782 0.043 1.453 sum 8.594 -23.055 0.936 24.623 Atomic orbital electron populations 1.69622 1.06000 1.28405 1.49429 1.25332 0.95678 0.99942 0.96863 0.85755 0.79654 0.80836 0.77811 1.19158 1.20631 1.20628 1.19773 0.93472 0.81998 1.48118 0.87643 1.41798 1.09508 1.04462 1.62692 1.19777 0.88289 0.85031 0.85430 1.90487 1.13771 1.86888 1.57363 1.20778 0.91231 0.84843 1.03138 1.44769 1.11185 1.03357 1.78921 1.15855 0.85214 0.80567 0.78021 1.90909 1.14089 1.84296 1.58410 1.45040 1.08986 1.05150 1.81362 1.21135 0.95289 0.78875 1.02529 1.21344 0.96941 0.94169 0.99021 0.90187 1.21666 0.96951 0.99740 0.97317 1.21484 0.97766 0.93972 1.02286 1.22288 1.00094 0.97598 0.99036 1.21796 0.95169 0.82360 0.95956 0.92702 1.86521 1.37984 1.16198 1.96747 1.21415 0.97163 0.92021 1.03669 0.91646 0.77005 0.90034 0.90027 0.75657 0.77030 0.91508 0.91511 0.91292 0.91336 0.91471 0.91736 0.91033 0.91883 0.77609 0.90707 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.95 13.05 55.50 0.72 -23.23 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.28 9.68 -14.94 -0.14 -8.42 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.69 5.29 -10.96 -0.06 -13.74 16 10 C 0.43 9.88 7.85 -10.98 -0.09 9.79 16 11 O -0.60 -15.29 15.24 5.55 0.08 -15.20 16 12 C 0.13 2.42 6.15 -5.19 -0.03 2.39 16 13 N -0.72 -12.24 5.53 -66.41 -0.37 -12.60 16 14 C 0.70 11.49 8.57 -86.92 -0.74 10.74 16 15 O -0.60 -11.89 16.34 5.28 0.09 -11.80 16 16 N -0.75 -8.77 5.29 -65.22 -0.34 -9.11 16 17 C 0.15 1.48 5.06 -4.04 -0.02 1.46 16 18 C -0.10 -0.69 2.22 -90.62 -0.20 -0.89 16 19 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 20 C -0.12 -0.81 5.08 -26.73 -0.14 -0.94 16 21 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 22 C -0.15 -0.87 5.54 -26.73 -0.15 -1.01 16 23 C 0.11 0.70 3.47 -26.71 -0.09 0.61 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 O -0.57 -4.22 13.32 -35.23 -0.47 -4.69 16 26 C -0.10 -0.78 4.86 -26.71 -0.13 -0.91 16 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 29 H 0.08 1.49 8.14 -51.92 -0.42 1.06 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.41 6.60 7.45 -40.82 -0.30 6.30 16 32 H 0.40 3.69 7.67 -40.82 -0.31 3.38 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.48 7.18 -51.93 -0.37 0.10 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.38 1.23 9.08 45.56 0.41 1.64 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 355.44 15.07 5.36 5.36 Total: -1.00 -33.16 355.44 -7.91 -41.06 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -5.91 Total: 15.92 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -1.99 Total: 12.53 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.05 Total: -58.69 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.30 Total: -31.70 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.16 -7.91 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261100504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.092 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds