Wall clock time and date at job start Tue Mar 31 2020 04:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00089 * 2 1 4 4 H 1.48496 * 109.47329 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47077 * 300.00139 * 3 2 1 6 6 H 1.48504 * 109.47058 * 59.99893 * 3 2 1 7 7 C 1.38948 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00027 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99851 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00012 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47467 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00431 * 180.02562 * 13 12 10 15 15 O 1.21593 * 119.99894 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00097 * 179.72742 * 14 13 12 17 17 C 1.46504 * 119.99854 * 180.27545 * 16 14 13 18 18 C 1.53004 * 109.46928 * 179.97438 * 17 16 14 19 19 H 1.09000 * 109.46819 * 304.99625 * 18 17 16 20 20 C 1.52995 * 109.46950 * 64.99606 * 18 17 16 21 21 C 1.53004 * 109.46609 * 180.02562 * 20 18 17 22 22 C 1.53002 * 109.47059 * 299.99913 * 21 20 18 23 23 C 1.52995 * 109.46995 * 60.00379 * 22 21 20 24 24 H 1.09000 * 109.47390 * 59.99748 * 23 22 21 25 25 O 1.42903 * 109.46949 * 179.97438 * 23 22 21 26 26 C 1.52994 * 109.46829 * 185.00128 * 18 17 16 27 27 H 0.96995 * 120.00047 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00500 * 359.97438 * 9 7 2 29 29 H 1.09009 * 109.47290 * 59.99894 * 12 10 9 30 30 H 1.08998 * 109.47607 * 300.00318 * 12 10 9 31 31 H 0.97000 * 119.99456 * 359.97438 * 13 12 10 32 32 H 0.97000 * 119.99736 * 0.26819 * 16 14 13 33 33 H 1.08998 * 109.46968 * 299.99782 * 17 16 14 34 34 H 1.08997 * 109.47198 * 59.99605 * 17 16 14 35 35 H 1.08993 * 109.47306 * 299.99495 * 20 18 17 36 36 H 1.09000 * 109.47344 * 60.00341 * 20 18 17 37 37 H 1.09002 * 109.47253 * 180.02562 * 21 20 18 38 38 H 1.09000 * 109.47124 * 60.00041 * 21 20 18 39 39 H 1.09000 * 109.47257 * 300.00046 * 22 21 20 40 40 H 1.09001 * 109.47241 * 180.02562 * 22 21 20 41 41 H 0.96694 * 114.00067 * 299.99430 * 25 23 22 42 42 H 1.09000 * 109.47010 * 299.99380 * 26 18 17 43 43 H 1.09002 * 109.47806 * 59.99697 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1959 -5.9765 -0.0007 14 6 1.7467 -7.2471 -0.0009 15 8 0.5512 -7.4694 0.0001 16 7 2.6225 -8.2715 -0.0071 17 6 2.1342 -9.6527 -0.0134 18 6 3.3242 -10.6144 -0.0203 19 1 3.9758 -10.3800 -0.8621 20 6 4.1062 -10.4674 1.2864 21 6 5.2966 -11.4286 1.2791 22 6 4.7904 -12.8664 1.1466 23 6 4.0083 -13.0133 -0.1601 24 1 4.6598 -12.7784 -1.0019 25 8 3.5360 -14.3563 -0.2842 26 6 2.8174 -12.0519 -0.1526 27 1 -0.4850 0.8400 0.0004 28 1 0.3534 -2.3907 0.0002 29 1 0.6168 -4.9209 -0.8897 30 1 0.6175 -4.9205 0.8902 31 1 3.1495 -5.7992 -0.0018 32 1 3.5762 -8.0942 -0.0075 33 1 1.5298 -9.8284 0.8765 34 1 1.5274 -9.8196 -0.9034 35 1 4.4673 -9.4433 1.3805 36 1 3.4547 -10.7018 2.1282 37 1 5.8536 -11.3243 2.2102 38 1 5.9481 -11.1938 0.4373 39 1 4.1389 -13.1012 1.9883 40 1 5.6384 -13.5512 1.1418 41 1 4.2384 -15.0207 -0.2959 42 1 2.1658 -12.2863 0.6891 43 1 2.2602 -12.1566 -1.0836 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261100504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:25 Heat of formation + Delta-G solvation = -171.310818 kcal Electronic energy + Delta-G solvation = -23665.277608 eV Core-core repulsion = 19936.073701 eV Total energy + Delta-G solvation = -3729.203907 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28144 -40.27083 -39.79671 -37.21664 -36.23194 -35.28548 -35.25358 -33.36899 -32.28643 -30.47360 -29.20789 -26.91861 -25.87598 -23.39177 -22.44759 -21.88971 -21.35203 -20.83187 -20.10327 -19.54099 -18.02555 -17.50594 -17.36973 -16.95515 -16.49263 -16.35205 -16.04361 -15.88726 -15.48299 -15.36592 -15.12592 -15.05503 -14.64954 -14.00466 -13.94463 -13.66439 -13.54464 -13.46010 -13.16827 -12.93778 -12.88648 -12.43839 -12.32269 -12.10634 -11.99357 -11.62777 -11.57319 -11.52414 -11.42969 -11.13512 -10.65706 -10.54826 -10.42152 -10.09568 -9.79706 -8.50475 -6.00619 1.35715 1.43102 1.55820 1.63060 1.90378 2.12946 2.29190 3.02939 3.16795 3.21026 3.42750 3.63526 3.70739 4.05517 4.11996 4.20202 4.24272 4.29028 4.43830 4.46665 4.46932 4.49311 4.59375 4.66028 4.74414 4.83799 5.07932 5.14441 5.18865 5.22421 5.27434 5.31991 5.33387 5.39658 5.47186 5.55132 5.92221 5.97313 6.48735 6.91956 7.04181 7.04631 7.43658 7.54693 7.95103 8.66698 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.043121 B = 0.002103 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.186956 B =13308.050111 C =13781.335603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.013 4.013 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.435 3.565 11 O -0.623 6.623 12 C 0.142 3.858 13 N -0.724 5.724 14 C 0.703 3.297 15 O -0.634 6.634 16 N -0.729 5.729 17 C 0.145 3.855 18 C -0.081 4.081 19 H 0.093 0.907 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.148 4.148 23 C 0.107 3.893 24 H 0.066 0.934 25 O -0.589 6.589 26 C -0.106 4.106 27 H 0.280 0.720 28 H 0.399 0.601 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.411 0.589 32 H 0.410 0.590 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.394 0.606 42 H 0.063 0.937 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.679 -24.673 0.795 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.213 4.213 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.196 5.196 10 C 0.222 3.778 11 O -0.511 6.511 12 C 0.013 3.987 13 N -0.382 5.382 14 C 0.403 3.597 15 O -0.516 6.516 16 N -0.386 5.386 17 C 0.021 3.979 18 C -0.100 4.100 19 H 0.111 0.889 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.186 4.186 23 C 0.048 3.952 24 H 0.084 0.916 25 O -0.398 6.398 26 C -0.144 4.144 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.248 0.752 32 H 0.247 0.753 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.244 0.756 42 H 0.082 0.918 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.674 -24.410 0.790 25.917 hybrid contribution 0.828 0.836 0.077 1.179 sum 9.502 -23.574 0.866 25.432 Atomic orbital electron populations 1.69688 1.07018 1.29557 1.49398 1.26149 0.96558 1.02742 0.95862 0.84796 0.78137 0.76679 0.78259 1.19364 1.19694 1.19681 1.19775 0.92973 0.83505 1.50237 0.89504 1.41848 1.09610 1.04613 1.63487 1.20409 0.88113 0.85879 0.83445 1.90464 1.15130 1.87559 1.57988 1.20576 0.91035 0.83114 1.03993 1.44672 1.10991 1.03228 1.79260 1.15975 0.85150 0.80847 0.77776 1.90887 1.15852 1.84760 1.60130 1.44928 1.09246 1.04760 1.79629 1.21243 0.96554 0.78413 1.01642 1.21221 0.95753 0.93145 0.99898 0.88879 1.21665 0.97266 1.00208 0.96548 1.21467 0.97247 0.93505 1.02967 1.22244 1.00289 0.97977 0.98056 1.21791 0.94651 0.81910 0.96829 0.91647 1.86476 1.39549 1.16952 1.96813 1.21404 0.97642 0.92458 1.02884 0.91095 0.76707 0.89130 0.89129 0.75171 0.75317 0.92550 0.92340 0.91214 0.92216 0.91013 0.90776 0.92117 0.90314 0.75620 0.91780 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 1.00 41.69 29.55 68.60 2.03 43.72 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 7 C -0.34 -18.46 9.68 84.04 0.81 -17.65 16 8 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.16 5.29 -306.98 -1.62 -29.78 16 10 C 0.43 20.03 7.85 87.66 0.69 20.72 16 11 O -0.62 -31.92 15.24 -3.07 -0.05 -31.97 16 12 C 0.14 5.24 6.15 85.63 0.53 5.77 16 13 N -0.72 -23.81 5.53 -482.29 -2.67 -26.48 16 14 C 0.70 22.38 8.57 179.06 1.53 23.91 16 15 O -0.63 -25.00 16.34 -4.01 -0.07 -25.07 16 16 N -0.73 -16.22 5.29 -478.52 -2.53 -18.75 16 17 C 0.15 2.85 5.06 86.38 0.44 3.29 16 18 C -0.08 -1.06 2.22 -10.80 -0.02 -1.08 16 19 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 20 C -0.12 -1.43 5.08 30.59 0.16 -1.28 16 21 C -0.11 -1.05 5.92 30.60 0.18 -0.87 16 22 C -0.15 -1.39 5.54 30.59 0.17 -1.22 16 23 C 0.11 1.23 3.47 30.61 0.11 1.33 16 24 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 25 O -0.59 -7.93 13.32 -148.98 -1.98 -9.91 16 26 C -0.11 -1.48 4.86 30.61 0.15 -1.33 16 27 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 28 H 0.40 19.33 7.90 -92.71 -0.73 18.59 16 29 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 30 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.41 12.94 7.45 -92.71 -0.69 12.25 16 32 H 0.41 6.89 7.67 -92.71 -0.71 6.18 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 0.83 7.18 -2.39 -0.02 0.81 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.39 1.90 9.08 -74.06 -0.67 1.22 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -70.26 355.44 -3.15 -73.41 By element: Atomic # 1 Polarization: 43.69 SS G_CDS: -1.75 Total: 41.94 kcal Atomic # 6 Polarization: 26.19 SS G_CDS: 5.20 Total: 31.39 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -6.54 Total: -123.51 kcal Atomic # 8 Polarization: -64.85 SS G_CDS: -2.10 Total: -66.95 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -70.26 -3.15 -73.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261100504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.902 kcal (2) G-P(sol) polarization free energy of solvation -70.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds