Wall clock time and date at job start Tue Mar 31 2020 05:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47319 * 2 1 4 4 C 1.50696 * 109.47120 * 120.00683 * 2 1 3 5 5 O 1.21275 * 120.00275 * 359.97438 * 4 2 1 6 6 N 1.34781 * 119.99827 * 179.97438 * 4 2 1 7 7 N 1.40098 * 119.99792 * 179.97438 * 6 4 2 8 8 C 1.34775 * 120.00124 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00066 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.00217 * 179.97438 * 8 7 6 11 11 N 1.46904 * 109.47311 * 180.02562 * 10 8 7 12 12 C 1.47843 * 110.99640 * 69.15748 * 11 10 8 13 13 C 1.54916 * 104.79337 * 146.36598 * 12 11 10 14 14 C 1.55398 * 101.74107 * 323.02060 * 13 12 11 15 15 O 1.42902 * 110.67651 * 277.17865 * 14 13 12 16 16 C 1.50693 * 110.84773 * 153.86113 * 14 13 12 17 17 H 1.08003 * 120.00166 * 246.46481 * 16 14 13 18 18 C 1.37883 * 119.99850 * 66.46355 * 16 14 13 19 19 N 1.31508 * 119.99898 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99869 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47125 * 60.00068 * 20 18 16 22 22 H 1.48500 * 109.46862 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47348 * 299.99785 * 20 18 16 24 24 C 1.47439 * 111.00045 * 190.00457 * 11 10 8 25 25 H 1.09002 * 109.46696 * 299.99923 * 1 2 3 26 26 H 1.09000 * 109.47237 * 59.99623 * 1 2 3 27 27 H 1.08998 * 109.47478 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47018 * 240.00404 * 2 1 3 29 29 H 1.09000 * 109.46441 * 60.00451 * 3 2 1 30 30 H 1.09001 * 109.46733 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47274 * 300.00354 * 3 2 1 32 32 H 0.97001 * 120.00416 * 359.97438 * 6 4 2 33 33 H 0.97002 * 120.00330 * 359.97438 * 7 6 4 34 34 H 1.09006 * 109.46901 * 60.00378 * 10 8 7 35 35 H 1.08995 * 109.47570 * 300.00103 * 10 8 7 36 36 H 1.08996 * 110.37823 * 265.19398 * 12 11 10 37 37 H 1.09002 * 110.37399 * 27.53914 * 12 11 10 38 38 H 1.08995 * 110.98807 * 81.01940 * 13 12 11 39 39 H 1.08997 * 110.99076 * 204.80412 * 13 12 11 40 40 H 0.96704 * 113.99505 * 293.43296 * 15 14 13 41 41 H 0.97004 * 120.00131 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.88998 * 356.14887 * 24 11 10 43 43 H 1.09003 * 109.88733 * 117.17548 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 1.2442 -1.1711 2.0288 6 7 3.3574 -0.8341 1.4433 7 7 3.8244 -1.4942 2.5874 8 6 5.1494 -1.6183 2.8002 9 8 5.9376 -1.1581 2.0015 10 6 5.6518 -2.3279 4.0311 11 7 7.1208 -2.3286 4.0307 12 6 7.6513 -0.9660 4.2490 13 6 8.9574 -1.1746 5.0556 14 6 8.5706 -2.3599 5.9830 15 8 7.8632 -1.8910 7.1327 16 6 9.7919 -3.1434 6.3897 17 1 9.9190 -4.1605 6.0496 18 6 10.7471 -2.5616 7.1961 19 7 10.5920 -1.3233 7.6107 20 14 12.2614 -3.5325 7.6998 21 1 13.0152 -3.9386 6.4864 22 1 13.1270 -2.6878 8.5613 23 1 11.8455 -4.7432 8.4524 24 6 7.6491 -3.2128 5.0858 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6767 1.9562 0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 3.9878 -0.4661 0.8045 33 1 3.1941 -1.8620 3.2265 34 1 5.2876 -3.3553 4.0324 35 1 5.2894 -1.8129 4.9208 36 1 7.8672 -0.4854 3.2949 37 1 6.9419 -0.3700 4.8232 38 1 9.7825 -1.4490 4.3983 39 1 9.2031 -0.2862 5.6373 40 1 8.3978 -1.3496 7.7296 41 1 11.2642 -0.9138 8.1778 42 1 6.8272 -3.6173 5.6765 43 1 8.2184 -4.0267 4.6368 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261458056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:54 Heat of formation + Delta-G solvation = -87.997231 kcal Electronic energy + Delta-G solvation = -24591.346722 eV Core-core repulsion = 20865.755563 eV Total energy + Delta-G solvation = -3725.591159 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.61833 -39.41041 -37.98278 -35.50282 -34.92565 -34.55375 -32.08734 -31.70363 -30.02875 -28.13936 -27.51352 -26.36847 -24.33758 -23.58178 -21.53153 -20.62221 -19.84572 -19.49805 -17.99845 -17.76192 -17.14416 -16.30036 -15.91117 -15.38558 -15.20092 -14.90212 -14.75386 -14.33750 -14.10087 -13.94028 -13.38782 -13.35592 -13.14395 -12.73190 -12.44808 -12.38463 -11.90575 -11.80178 -11.60840 -11.53381 -11.44531 -11.30060 -11.17386 -10.92427 -10.61239 -10.50902 -10.37339 -10.31369 -9.98059 -9.76752 -9.29328 -8.62967 -8.49035 -8.11151 -7.72079 -6.22335 -4.29280 1.67091 2.14134 2.70456 3.24672 3.29340 3.32380 3.76036 4.23072 4.30825 4.43659 4.50673 4.63934 4.80548 4.98767 5.03990 5.19379 5.29602 5.36495 5.42479 5.51480 5.54857 5.68625 5.72471 5.86412 6.08505 6.13131 6.26170 6.34841 6.50525 6.54800 6.61855 6.90888 7.08397 7.34462 7.39290 7.47569 7.60431 7.64572 7.75551 7.81467 8.11308 8.30457 8.71702 9.38152 9.49339 10.85126 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.046579 B = 0.002580 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.983755 B =10848.110721 C =10970.444984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 C -0.149 4.149 4 C 0.514 3.486 5 O -0.542 6.542 6 N -0.521 5.521 7 N -0.535 5.535 8 C 0.517 3.483 9 O -0.517 6.517 10 C 0.044 3.956 11 N -0.512 5.512 12 C 0.046 3.954 13 C -0.132 4.132 14 C 0.237 3.763 15 O -0.593 6.593 16 C -0.531 4.531 17 H 0.063 0.937 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.902 3.098 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.058 3.942 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.431 0.569 33 H 0.430 0.570 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.385 0.615 41 H 0.268 0.732 42 H 0.049 0.951 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.885 3.854 -13.009 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.126 4.126 3 C -0.207 4.207 4 C 0.300 3.700 5 O -0.418 6.418 6 N -0.268 5.268 7 N -0.286 5.286 8 C 0.304 3.696 9 O -0.389 6.389 10 C -0.089 4.089 11 N -0.236 5.236 12 C -0.082 4.082 13 C -0.171 4.171 14 C 0.196 3.804 15 O -0.404 6.404 16 C -0.570 4.570 17 H 0.081 0.919 18 C -0.132 4.132 19 N -0.540 5.540 20 Si 0.729 3.271 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.069 4.069 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.273 0.727 33 H 0.271 0.729 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.237 0.763 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.087 3.478 -13.666 21.393 hybrid contribution 1.074 0.147 1.324 1.711 sum -15.013 3.625 -12.342 19.770 Atomic orbital electron populations 1.21633 0.91825 1.03109 1.02462 1.21256 0.98608 0.97260 0.95464 1.21864 1.01543 0.93867 1.03415 1.21033 0.80211 0.80205 0.88523 1.90722 1.54784 1.49179 1.47077 1.44961 1.07172 1.56555 1.18103 1.45163 1.07484 1.58077 1.17855 1.21252 0.79584 0.80047 0.88749 1.90700 1.54384 1.47508 1.46341 1.22061 0.92678 1.00977 0.93225 1.63478 1.02624 1.10252 1.47290 1.23114 0.97321 0.88581 0.99142 1.23235 0.94624 1.01203 0.98022 1.19745 0.88433 0.89343 0.82856 1.86050 1.43638 1.73309 1.37384 1.21545 1.04372 0.99964 1.31112 0.91897 1.25013 0.98239 0.94835 0.95151 1.69576 1.36228 1.12564 1.35592 0.86495 0.82130 0.79844 0.78588 1.20059 1.21206 1.20108 1.22904 0.97939 0.95744 0.90319 0.91707 0.91617 0.91755 0.87922 0.91726 0.91854 0.90881 0.72735 0.72865 0.87861 0.91114 0.90946 0.94946 0.91681 0.90888 0.76347 0.92203 0.93222 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 8.48 37.16 0.32 -0.56 16 2 C -0.10 -0.69 3.26 -91.77 -0.30 -0.99 16 3 C -0.15 -0.83 9.09 37.16 0.34 -0.49 16 4 C 0.51 5.35 7.27 -10.99 -0.08 5.27 16 5 O -0.54 -7.40 15.82 5.56 0.09 -7.31 16 6 N -0.52 -5.63 6.15 31.22 0.19 -5.44 16 7 N -0.53 -6.53 6.26 31.22 0.20 -6.33 16 8 C 0.52 7.68 7.74 -10.99 -0.09 7.60 16 9 O -0.52 -9.25 14.87 5.55 0.08 -9.16 16 10 C 0.04 0.67 5.05 -4.97 -0.03 0.65 16 11 N -0.51 -9.92 4.86 -232.68 -1.13 -11.05 16 12 C 0.05 0.94 5.74 -2.29 -0.01 0.92 16 13 C -0.13 -3.09 5.68 -24.45 -0.14 -3.23 16 14 C 0.24 5.80 0.86 -89.81 -0.08 5.72 16 15 O -0.59 -15.12 13.09 -35.23 -0.46 -15.58 16 16 C -0.53 -14.08 8.22 -34.44 -0.28 -14.36 16 17 H 0.06 1.64 7.53 -52.48 -0.40 1.25 16 18 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 19 N -0.90 -23.89 10.72 55.43 0.59 -23.29 16 20 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 C 0.06 1.22 6.21 -2.84 -0.02 1.21 16 25 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 28 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.34 7.57 -51.93 -0.39 -0.05 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.43 4.22 7.42 -182.60 -1.36 2.86 16 33 H 0.43 4.73 8.00 -182.60 -1.46 3.26 16 34 H 0.10 1.32 8.03 -51.93 -0.42 0.91 16 35 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 36 H 0.07 1.49 7.38 -51.93 -0.38 1.11 16 37 H 0.03 0.66 7.62 -51.93 -0.40 0.26 16 38 H 0.06 1.58 8.04 -51.93 -0.42 1.16 16 39 H 0.07 1.79 7.78 -51.93 -0.40 1.39 16 40 H 0.38 10.10 6.99 45.56 0.32 10.41 16 41 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.05 1.00 7.48 -51.93 -0.39 0.61 16 43 H 0.08 1.78 7.63 -51.93 -0.40 1.39 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -31.22 351.92 -8.78 -40.00 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -8.16 Total: 13.86 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.46 Total: 3.46 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.15 Total: -46.11 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.29 Total: -32.06 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.22 -8.78 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261458056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.993 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds