Wall clock time and date at job start Tue Mar 31 2020 05:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47319 * 2 1 4 4 C 1.50696 * 109.47120 * 120.00683 * 2 1 3 5 5 O 1.21275 * 120.00275 * 359.97438 * 4 2 1 6 6 N 1.34781 * 119.99827 * 179.97438 * 4 2 1 7 7 N 1.40098 * 119.99792 * 179.97438 * 6 4 2 8 8 C 1.34775 * 120.00124 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00066 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.00217 * 179.97438 * 8 7 6 11 11 N 1.46904 * 109.47311 * 180.02562 * 10 8 7 12 12 C 1.47843 * 110.99640 * 69.15748 * 11 10 8 13 13 C 1.54916 * 104.79337 * 146.36598 * 12 11 10 14 14 C 1.55398 * 101.74107 * 323.02060 * 13 12 11 15 15 O 1.42902 * 110.67651 * 277.17865 * 14 13 12 16 16 C 1.50693 * 110.84773 * 153.86113 * 14 13 12 17 17 H 1.08003 * 120.00166 * 246.46481 * 16 14 13 18 18 C 1.37883 * 119.99850 * 66.46355 * 16 14 13 19 19 N 1.31508 * 119.99898 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99869 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47125 * 60.00068 * 20 18 16 22 22 H 1.48500 * 109.46862 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47348 * 299.99785 * 20 18 16 24 24 C 1.47439 * 111.00045 * 190.00457 * 11 10 8 25 25 H 1.09002 * 109.46696 * 299.99923 * 1 2 3 26 26 H 1.09000 * 109.47237 * 59.99623 * 1 2 3 27 27 H 1.08998 * 109.47478 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47018 * 240.00404 * 2 1 3 29 29 H 1.09000 * 109.46441 * 60.00451 * 3 2 1 30 30 H 1.09001 * 109.46733 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47274 * 300.00354 * 3 2 1 32 32 H 0.97001 * 120.00416 * 359.97438 * 6 4 2 33 33 H 0.97002 * 120.00330 * 359.97438 * 7 6 4 34 34 H 1.09006 * 109.46901 * 60.00378 * 10 8 7 35 35 H 1.08995 * 109.47570 * 300.00103 * 10 8 7 36 36 H 1.08996 * 110.37823 * 265.19398 * 12 11 10 37 37 H 1.09002 * 110.37399 * 27.53914 * 12 11 10 38 38 H 1.08995 * 110.98807 * 81.01940 * 13 12 11 39 39 H 1.08997 * 110.99076 * 204.80412 * 13 12 11 40 40 H 0.96704 * 113.99505 * 293.43296 * 15 14 13 41 41 H 0.97004 * 120.00131 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.88998 * 356.14887 * 24 11 10 43 43 H 1.09003 * 109.88733 * 117.17548 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 1.2442 -1.1711 2.0288 6 7 3.3574 -0.8341 1.4433 7 7 3.8244 -1.4942 2.5874 8 6 5.1494 -1.6183 2.8002 9 8 5.9376 -1.1581 2.0015 10 6 5.6518 -2.3279 4.0311 11 7 7.1208 -2.3286 4.0307 12 6 7.6513 -0.9660 4.2490 13 6 8.9574 -1.1746 5.0556 14 6 8.5706 -2.3599 5.9830 15 8 7.8632 -1.8910 7.1327 16 6 9.7919 -3.1434 6.3897 17 1 9.9190 -4.1605 6.0496 18 6 10.7471 -2.5616 7.1961 19 7 10.5920 -1.3233 7.6107 20 14 12.2614 -3.5325 7.6998 21 1 13.0152 -3.9386 6.4864 22 1 13.1270 -2.6878 8.5613 23 1 11.8455 -4.7432 8.4524 24 6 7.6491 -3.2128 5.0858 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6767 1.9562 0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 3.9878 -0.4661 0.8045 33 1 3.1941 -1.8620 3.2265 34 1 5.2876 -3.3553 4.0324 35 1 5.2894 -1.8129 4.9208 36 1 7.8672 -0.4854 3.2949 37 1 6.9419 -0.3700 4.8232 38 1 9.7825 -1.4490 4.3983 39 1 9.2031 -0.2862 5.6373 40 1 8.3978 -1.3496 7.7296 41 1 11.2642 -0.9138 8.1778 42 1 6.8272 -3.6173 5.6765 43 1 8.2184 -4.0267 4.6368 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261458056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:53 Heat of formation + Delta-G solvation = -113.555071 kcal Electronic energy + Delta-G solvation = -24592.454993 eV Core-core repulsion = 20865.755563 eV Total energy + Delta-G solvation = -3726.699430 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61523 -40.61840 -39.54279 -36.68135 -36.19452 -35.57386 -34.10792 -32.88085 -31.50537 -29.92338 -28.11500 -27.78624 -25.97833 -24.49539 -22.65283 -22.05991 -21.32878 -20.86359 -19.16654 -18.98301 -18.64358 -17.33327 -17.01207 -16.89432 -16.83172 -16.22602 -15.97027 -15.72068 -15.47967 -14.97866 -14.84723 -14.68412 -14.06488 -13.79479 -13.75585 -13.42604 -13.22155 -13.18532 -12.98088 -12.91427 -12.71606 -12.47828 -12.34215 -12.31742 -12.13853 -12.09327 -12.03087 -11.86900 -11.33638 -11.18059 -10.91049 -10.61614 -10.08295 -9.49974 -9.27226 -8.21272 -6.35482 0.72979 1.21148 1.43861 1.44181 1.51983 1.65039 2.39756 2.78948 3.03545 3.17296 3.44190 3.80394 3.86650 3.96687 4.00636 4.13760 4.31934 4.33626 4.43379 4.43707 4.48216 4.65764 4.76440 4.84992 4.86015 4.93901 5.05910 5.12716 5.27454 5.29530 5.33823 5.48299 5.53191 5.55299 5.63038 5.80814 5.90043 6.07908 6.16625 6.45704 6.68912 6.81106 7.27733 7.34904 7.43832 8.84231 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.046579 B = 0.002580 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.983755 B =10848.110721 C =10970.444984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C -0.147 4.147 4 C 0.513 3.487 5 O -0.577 6.577 6 N -0.519 5.519 7 N -0.526 5.526 8 C 0.524 3.476 9 O -0.551 6.551 10 C 0.040 3.960 11 N -0.517 5.517 12 C 0.061 3.939 13 C -0.126 4.126 14 C 0.221 3.779 15 O -0.597 6.597 16 C -0.556 4.556 17 H 0.060 0.940 18 C 0.027 3.973 19 N -0.916 5.916 20 Si 0.961 3.039 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.066 3.934 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.128 0.872 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.436 0.564 33 H 0.436 0.564 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.378 0.622 41 H 0.269 0.731 42 H 0.061 0.939 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.778 3.621 -14.197 22.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 C -0.205 4.205 4 C 0.301 3.699 5 O -0.454 6.454 6 N -0.267 5.267 7 N -0.276 5.276 8 C 0.310 3.690 9 O -0.426 6.426 10 C -0.093 4.093 11 N -0.241 5.241 12 C -0.067 4.067 13 C -0.165 4.165 14 C 0.181 3.819 15 O -0.406 6.406 16 C -0.594 4.594 17 H 0.078 0.922 18 C -0.173 4.173 19 N -0.556 5.556 20 Si 0.787 3.213 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.061 4.061 25 H 0.068 0.932 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.279 0.721 33 H 0.279 0.721 34 H 0.150 0.850 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.229 0.771 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.018 3.243 -14.865 22.827 hybrid contribution 1.273 0.238 1.679 2.120 sum -15.745 3.481 -13.186 20.830 Atomic orbital electron populations 1.21653 0.91740 1.02565 1.03014 1.21369 0.98524 0.97750 0.94258 1.21879 1.01678 0.92945 1.03981 1.21853 0.79490 0.79427 0.89105 1.90708 1.55507 1.50694 1.48532 1.45176 1.07603 1.56371 1.17561 1.44955 1.06868 1.57314 1.18439 1.21003 0.80080 0.79686 0.88208 1.90692 1.55357 1.49113 1.47400 1.22176 0.90078 1.03126 0.93883 1.63391 1.05374 1.09027 1.46346 1.22905 0.95830 0.89462 0.98460 1.23058 0.95620 1.00091 0.97763 1.19976 0.88961 0.89987 0.82966 1.86040 1.43641 1.73207 1.37724 1.21854 1.05611 1.00190 1.31739 0.92199 1.25716 1.00706 0.95725 0.95164 1.69665 1.36857 1.13438 1.35672 0.85567 0.78992 0.78601 0.78182 1.19828 1.20822 1.19767 1.22752 0.97810 0.95405 0.90158 0.93208 0.89002 0.92856 0.85390 0.92856 0.91653 0.88650 0.72057 0.72059 0.84960 0.90295 0.90960 0.94747 0.93263 0.92809 0.77132 0.92138 0.92034 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.48 71.98 0.61 -0.91 16 2 C -0.10 -1.08 3.26 -11.54 -0.04 -1.12 16 3 C -0.15 -1.29 9.09 71.98 0.65 -0.64 16 4 C 0.51 9.97 7.27 87.65 0.64 10.60 16 5 O -0.58 -15.30 15.82 -3.02 -0.05 -15.35 16 6 N -0.52 -10.44 6.15 -173.53 -1.07 -11.50 16 7 N -0.53 -12.04 6.26 -173.53 -1.09 -13.13 16 8 C 0.52 14.76 7.74 87.66 0.68 15.44 16 9 O -0.55 -19.06 14.87 -3.04 -0.05 -19.11 16 10 C 0.04 1.15 5.05 85.56 0.43 1.58 16 11 N -0.52 -19.45 4.86 -890.07 -4.33 -23.78 16 12 C 0.06 2.48 5.74 86.78 0.50 2.98 16 13 C -0.13 -6.00 5.68 32.07 0.18 -5.82 16 14 C 0.22 10.87 0.86 -10.27 -0.01 10.86 16 15 O -0.60 -30.51 13.09 -148.98 -1.95 -32.46 16 16 C -0.56 -29.56 8.22 25.60 0.21 -29.35 16 17 H 0.06 3.13 7.53 -2.91 -0.02 3.11 16 18 C 0.03 1.41 5.29 84.66 0.45 1.86 16 19 N -0.92 -49.06 10.72 21.45 0.23 -48.83 16 20 Si 0.96 42.07 29.54 68.60 2.03 44.10 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C 0.07 2.74 6.21 86.65 0.54 3.27 16 25 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 26 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 28 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.56 7.57 -2.39 -0.02 0.55 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.44 7.83 7.42 -213.32 -1.58 6.25 16 33 H 0.44 8.93 8.00 -213.32 -1.71 7.22 16 34 H 0.13 3.02 8.03 -2.38 -0.02 3.00 16 35 H 0.08 2.19 7.85 -2.39 -0.02 2.17 16 36 H 0.07 2.96 7.38 -2.39 -0.02 2.94 16 37 H 0.03 1.38 7.62 -2.39 -0.02 1.36 16 38 H 0.05 2.44 8.04 -2.39 -0.02 2.42 16 39 H 0.05 2.71 7.78 -2.39 -0.02 2.69 16 40 H 0.38 20.16 6.99 -74.05 -0.52 19.64 16 41 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 42 H 0.06 2.37 7.48 -2.39 -0.02 2.35 16 43 H 0.08 3.43 7.63 -2.39 -0.02 3.41 16 Total: -1.00 -66.68 351.92 -4.19 -70.87 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -2.76 Total: 40.44 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 4.84 Total: 8.76 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -6.25 Total: -97.24 kcal Atomic # 8 Polarization: -64.88 SS G_CDS: -2.04 Total: -66.92 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -66.68 -4.19 -70.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261458056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.690 kcal (2) G-P(sol) polarization free energy of solvation -66.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds