Wall clock time and date at job start Tue Mar 31 2020 04:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48496 * 109.47254 * 179.72344 * 3 2 1 5 5 H 1.48497 * 109.46775 * 299.72278 * 3 2 1 6 6 H 1.48502 * 109.47217 * 59.72093 * 3 2 1 7 7 C 1.38816 * 119.99605 * 179.72140 * 2 1 3 8 8 H 1.07998 * 119.99645 * 205.84761 * 7 2 1 9 9 N 1.36937 * 120.00353 * 25.85418 * 7 2 1 10 10 C 1.46921 * 120.62612 * 27.52170 * 9 7 2 11 11 C 1.53630 * 108.54247 * 126.37046 * 10 9 7 12 12 C 1.53045 * 109.24023 * 54.85343 * 11 10 9 13 13 N 1.46497 * 109.44646 * 178.50197 * 12 11 10 14 14 C 1.34778 * 119.99738 * 275.05796 * 13 12 11 15 15 O 1.21587 * 120.00355 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99909 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99801 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46965 * 179.97438 * 17 16 14 19 19 H 1.09005 * 110.30507 * 57.82252 * 18 17 16 20 20 C 1.54175 * 110.34747 * 179.97438 * 18 17 16 21 21 O 1.44287 * 104.93979 * 118.86816 * 20 18 17 22 22 C 1.44403 * 104.60996 * 23.64289 * 21 20 18 23 23 O 1.44291 * 110.34816 * 295.51998 * 18 17 16 24 24 C 1.53036 * 109.53598 * 298.51421 * 12 11 10 25 25 C 1.46924 * 120.63200 * 207.80515 * 9 7 2 26 26 H 0.96999 * 119.99925 * 184.32770 * 1 2 3 27 27 H 1.08995 * 109.59060 * 246.20218 * 10 9 7 28 28 H 1.08997 * 109.59199 * 6.63190 * 10 9 7 29 29 H 1.08999 * 109.63296 * 294.86441 * 11 10 9 30 30 H 1.08996 * 109.43485 * 174.72425 * 11 10 9 31 31 H 1.08999 * 109.45703 * 58.53274 * 12 11 10 32 32 H 0.96998 * 120.00192 * 95.06564 * 13 12 11 33 33 H 0.96998 * 120.00021 * 0.02562 * 16 14 13 34 34 H 1.09000 * 109.47252 * 299.99638 * 17 16 14 35 35 H 1.08997 * 109.47506 * 59.99995 * 17 16 14 36 36 H 1.09002 * 110.34746 * 237.73417 * 20 18 17 37 37 H 1.09000 * 110.34704 * 0.02562 * 20 18 17 38 38 H 1.08999 * 110.40191 * 79.45413 * 22 21 20 39 39 H 1.08999 * 110.40365 * 201.75673 * 22 21 20 40 40 H 1.09001 * 109.49887 * 301.41449 * 24 12 11 41 41 H 1.09006 * 109.52402 * 181.33303 * 24 12 11 42 42 H 1.09005 * 109.58307 * 353.37096 * 25 9 7 43 43 H 1.08993 * 109.58946 * 113.79648 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0068 5 1 1.8965 2.3934 -1.2159 6 1 1.8864 2.3994 1.2091 7 6 2.0102 -1.2022 0.0058 8 1 3.0092 -1.2470 0.4139 9 7 1.4283 -2.3313 -0.5058 10 6 0.4085 -2.2361 -1.5592 11 6 0.8365 -3.1270 -2.7354 12 6 1.0838 -4.5492 -2.2270 13 7 1.4576 -5.4109 -3.3512 14 6 0.5009 -5.9846 -4.1076 15 8 -0.6724 -5.7867 -3.8572 16 7 0.8447 -6.7778 -5.1416 17 6 -0.1952 -7.4010 -5.9641 18 6 0.4589 -8.2435 -7.0610 19 1 1.1089 -8.9995 -6.6205 20 6 -0.6188 -8.9100 -7.9394 21 8 -0.3925 -8.3885 -9.2656 22 6 0.9940 -7.9851 -9.2667 23 8 1.2056 -7.4004 -7.9630 24 6 2.2157 -4.5349 -1.1972 25 6 1.8075 -3.6604 -0.0075 26 1 -0.4850 -0.8376 0.0634 27 1 -0.5513 -2.5759 -1.1703 28 1 0.3242 -1.2023 -1.8939 29 1 1.7520 -2.7345 -3.1779 30 1 0.0462 -3.1412 -3.4859 31 1 0.1750 -4.9318 -1.7625 32 1 2.3935 -5.5686 -3.5511 33 1 1.7807 -6.9361 -5.3411 34 1 -0.8192 -8.0394 -5.3386 35 1 -0.8108 -6.6258 -6.4202 36 1 -0.4970 -9.9931 -7.9322 37 1 -1.6145 -8.6371 -7.5900 38 1 1.6416 -8.8510 -9.4042 39 1 1.1748 -7.2483 -10.0494 40 1 3.1183 -4.1291 -1.6542 41 1 2.4077 -5.5511 -0.8527 42 1 2.6465 -3.5665 0.6820 43 1 0.9594 -4.1140 0.5054 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262191087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:40 Heat of formation + Delta-G solvation = -127.280665 kcal Electronic energy + Delta-G solvation = -24585.396048 eV Core-core repulsion = 20858.101431 eV Total energy + Delta-G solvation = -3727.294616 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56017 -41.01975 -39.28998 -36.64106 -36.12801 -35.50707 -34.00498 -32.24163 -31.71920 -30.76108 -27.31616 -26.39533 -25.81532 -24.09732 -23.66906 -22.85169 -21.86922 -21.10995 -19.63557 -19.19613 -18.27595 -17.84447 -17.21282 -17.17889 -16.48816 -16.30348 -16.11787 -15.95409 -15.55360 -15.35950 -15.20978 -15.11297 -14.59127 -14.41921 -14.00600 -13.94784 -13.49250 -13.37297 -13.30873 -12.94147 -12.66703 -12.61064 -12.45443 -12.10212 -11.91628 -11.81233 -11.65207 -11.45433 -11.31437 -11.19907 -10.81547 -10.48364 -10.38963 -9.81337 -8.95574 -8.28279 -5.40025 1.58903 1.59894 1.67736 1.83024 2.12292 2.52612 2.66052 3.04874 3.16718 3.22470 3.50317 3.53727 3.64721 3.78929 3.91552 3.97650 4.06394 4.24090 4.32534 4.39197 4.48020 4.49213 4.53935 4.61110 4.65936 4.73570 4.80389 4.91527 4.96718 4.99030 5.01675 5.14667 5.15506 5.38445 5.42073 5.53235 5.82998 5.85518 5.97523 6.37347 7.03962 7.07822 7.56008 7.76769 8.22352 8.99574 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.030814 B = 0.002603 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.455472 B =10755.438726 C =11027.413280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.081 4.081 3 Si 1.121 2.879 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.354 4.354 8 H 0.058 0.942 9 N -0.617 5.617 10 C 0.163 3.837 11 C -0.127 4.127 12 C 0.182 3.818 13 N -0.725 5.725 14 C 0.699 3.301 15 O -0.638 6.638 16 N -0.728 5.728 17 C 0.140 3.860 18 C 0.043 3.957 19 H 0.122 0.878 20 C 0.023 3.977 21 O -0.406 6.406 22 C 0.194 3.806 23 O -0.396 6.396 24 C -0.119 4.119 25 C 0.143 3.857 26 H 0.253 0.747 27 H -0.002 1.002 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.411 0.589 33 H 0.413 0.587 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.706 -22.479 -16.703 28.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.277 4.277 3 Si 0.945 3.055 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.483 4.483 8 H 0.076 0.924 9 N -0.342 5.342 10 C 0.036 3.964 11 C -0.167 4.167 12 C 0.076 3.924 13 N -0.379 5.379 14 C 0.398 3.602 15 O -0.520 6.520 16 N -0.385 5.385 17 C 0.015 3.985 18 C -0.015 4.015 19 H 0.140 0.860 20 C -0.054 4.054 21 O -0.327 6.327 22 C 0.081 3.919 23 O -0.317 6.317 24 C -0.159 4.159 25 C 0.017 3.983 26 H 0.063 0.937 27 H 0.016 0.984 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.248 0.752 33 H 0.249 0.751 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.143 0.857 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 5.492 -20.478 -16.648 26.957 hybrid contribution 0.406 -1.542 0.123 1.599 sum 5.898 -22.020 -16.525 28.156 Atomic orbital electron populations 1.70856 1.07781 1.29328 1.50831 1.27285 0.96537 1.05172 0.98689 0.82793 0.74398 0.71775 0.76514 1.19326 1.21671 1.21858 1.20286 0.98013 0.89469 1.40553 0.92385 1.44430 1.46941 1.02404 1.40409 1.20765 0.89839 0.97685 0.88125 1.22311 1.00569 0.96161 0.97677 1.20471 0.98174 0.88069 0.85673 1.45056 1.08998 1.51349 1.32529 1.16162 0.84805 0.78975 0.80217 1.90912 1.18981 1.68124 1.73957 1.44795 1.10950 1.51760 1.31014 1.21422 0.89930 0.96333 0.90765 1.23947 0.93869 0.92622 0.91029 0.86044 1.24181 1.00403 1.00230 0.80624 1.89252 1.29529 1.82166 1.31746 1.25290 0.82037 0.98053 0.86523 1.89303 1.70773 1.53215 1.18424 1.22115 0.97247 1.00872 0.95651 1.21043 0.97728 0.84914 0.94623 0.93717 0.98413 0.93680 0.91988 0.93605 0.92335 0.75237 0.75086 0.89215 0.93128 0.87219 0.87878 0.89098 0.85720 0.90779 0.88731 0.91639 0.96822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.68 12.46 21.65 0.27 -59.41 16 2 C -0.08 -4.70 4.66 84.86 0.40 -4.31 16 3 Si 1.12 51.83 29.99 68.60 2.06 53.88 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.35 -19.92 9.49 84.03 0.80 -19.13 16 8 H 0.06 3.21 7.95 -2.91 -0.02 3.18 16 9 N -0.62 -31.51 2.85 -698.28 -1.99 -33.49 16 10 C 0.16 8.24 4.72 86.51 0.41 8.65 16 11 C -0.13 -5.21 5.67 30.82 0.17 -5.03 16 12 C 0.18 6.22 2.41 45.02 0.11 6.33 16 13 N -0.72 -19.19 5.08 -457.68 -2.33 -21.51 16 14 C 0.70 20.59 8.53 179.05 1.53 22.12 16 15 O -0.64 -25.42 16.01 -3.99 -0.06 -25.49 16 16 N -0.73 -14.58 5.52 -478.53 -2.64 -17.22 16 17 C 0.14 2.49 5.19 86.38 0.45 2.94 16 18 C 0.04 0.49 3.61 30.99 0.11 0.60 16 19 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 20 C 0.02 0.23 7.55 72.38 0.55 0.77 16 21 O -0.41 -6.33 11.78 -125.85 -1.48 -7.81 16 22 C 0.19 2.23 8.53 113.37 0.97 3.20 16 23 O -0.40 -6.19 11.43 -125.85 -1.44 -7.62 16 24 C -0.12 -3.69 5.55 30.67 0.17 -3.52 16 25 C 0.14 5.81 6.51 86.36 0.56 6.38 16 26 H 0.25 16.40 6.69 -92.71 -0.62 15.78 16 27 H 0.00 -0.11 7.87 -2.39 -0.02 -0.13 16 28 H 0.04 2.58 6.31 -2.39 -0.02 2.56 16 29 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 32 H 0.41 7.77 8.62 -92.71 -0.80 6.97 16 33 H 0.41 5.78 8.49 -92.71 -0.79 5.00 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.10 1.02 7.71 -2.39 -0.02 1.01 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.54 16 39 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.07 2.58 7.93 -2.38 -0.02 2.56 16 43 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -79.50 347.56 -1.81 -81.30 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -0.41 Total: 18.38 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 6.22 Total: 19.00 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -6.68 Total: -131.64 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -2.98 Total: -40.92 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.06 Total: 53.88 kcal Total: -79.50 -1.81 -81.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262191087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.976 kcal (2) G-P(sol) polarization free energy of solvation -79.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds