Wall clock time and date at job start Tue Mar 31 2020 05:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99714 * 2 1 4 4 C 1.52998 * 109.45816 * 299.97223 * 3 2 1 5 5 C 1.53039 * 109.45724 * 180.02562 * 3 2 1 6 6 C 1.53193 * 109.31272 * 178.61275 * 5 3 2 7 7 N 1.46927 * 108.77580 * 54.63330 * 6 5 3 8 8 C 1.34774 * 120.63074 * 126.36527 * 7 6 5 9 9 O 1.21584 * 119.99910 * 185.22743 * 8 7 6 10 10 N 1.34772 * 120.00239 * 5.23007 * 8 7 6 11 11 C 1.46496 * 120.00356 * 175.01496 * 10 8 7 12 12 C 1.50701 * 109.47567 * 180.02562 * 11 10 8 13 13 O 1.21297 * 119.99347 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00092 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99825 * 180.02562 * 14 12 11 16 16 H 1.08006 * 119.99700 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00054 * 180.02562 * 15 14 12 18 18 N 1.31409 * 119.99733 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99886 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47105 * 89.99555 * 19 17 15 21 21 H 1.48503 * 109.46879 * 209.99433 * 19 17 15 22 22 H 1.48494 * 109.47144 * 329.99466 * 19 17 15 23 23 C 1.46934 * 118.73684 * 306.64610 * 7 6 5 24 24 C 1.52758 * 109.00861 * 53.30671 * 23 7 6 25 25 H 1.09002 * 109.46536 * 299.99578 * 1 2 3 26 26 H 1.08994 * 109.47465 * 59.99538 * 1 2 3 27 27 H 1.09002 * 109.46744 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47566 * 300.03001 * 4 3 2 29 29 H 1.09002 * 109.47228 * 60.03212 * 4 3 2 30 30 H 1.08997 * 109.47110 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.50315 * 58.65776 * 5 3 2 32 32 H 1.09003 * 109.52336 * 298.57867 * 5 3 2 33 33 H 1.08990 * 109.58701 * 294.84667 * 6 5 3 34 34 H 1.08995 * 109.70455 * 174.48805 * 6 5 3 35 35 H 0.97004 * 119.99962 * 355.01274 * 10 8 7 36 36 H 1.09004 * 109.47084 * 300.00155 * 11 10 8 37 37 H 1.08992 * 109.47364 * 59.99700 * 11 10 8 38 38 H 0.96993 * 120.00300 * 0.02562 * 14 12 11 39 39 H 0.97006 * 119.99578 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.58386 * 173.14307 * 23 7 6 41 41 H 1.08997 * 109.58173 * 293.56741 * 23 7 6 42 42 H 1.09002 * 109.56530 * 185.55372 * 24 23 7 43 43 H 1.09006 * 109.38665 * 65.51752 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5591 2.0642 -1.2497 5 6 3.5358 1.1844 -0.0006 6 6 4.1552 2.5851 -0.0356 7 7 3.6127 3.3701 1.0815 8 6 4.4369 3.9813 1.9554 9 8 3.9787 4.5480 2.9287 10 7 5.7688 3.9642 1.7505 11 6 6.6563 4.7194 2.6383 12 6 8.0850 4.5353 2.1958 13 8 8.3371 3.8410 1.2336 14 7 9.0826 5.1419 2.8691 15 6 10.3823 4.9748 2.4662 16 1 10.6068 4.3567 1.6094 17 6 11.4108 5.5998 3.1606 18 7 11.1376 6.3514 4.2033 19 14 13.1818 5.3715 2.6119 20 1 13.5362 6.4284 1.6308 21 1 14.0811 5.4677 3.7897 22 1 13.3358 4.0370 1.9792 23 6 2.1545 3.4711 1.2315 24 6 1.5576 2.0651 1.2490 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8806 1.5228 -2.1394 29 1 0.4725 2.1506 -1.2498 30 1 2.0026 3.0599 -1.2501 31 1 3.8559 0.6230 -0.8784 32 1 3.8604 0.6655 0.9013 33 1 3.9062 3.0712 -0.9788 34 1 5.2382 2.5105 0.0622 35 1 6.1399 3.4519 1.0151 36 1 6.3970 5.7773 2.5972 37 1 6.5424 4.3569 3.6599 38 1 8.8810 5.6967 3.6387 39 1 11.8556 6.7881 4.6879 40 1 1.9177 3.9789 2.1664 41 1 1.7390 4.0311 0.3937 42 1 0.4696 2.1306 1.2607 43 1 1.8998 1.5378 2.1395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324011292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:52 Heat of formation + Delta-G solvation = -127.403818 kcal Electronic energy + Delta-G solvation = -24787.022360 eV Core-core repulsion = 21059.722403 eV Total energy + Delta-G solvation = -3727.299957 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81914 -40.49797 -39.80425 -37.39268 -36.27456 -35.41003 -33.54277 -33.30947 -32.29670 -29.43646 -28.58125 -27.85802 -26.47923 -24.87421 -24.26202 -21.64473 -21.35647 -20.28796 -19.87246 -19.18560 -17.76736 -17.30643 -17.24627 -17.01267 -16.51038 -16.38833 -16.22052 -16.00627 -15.78618 -15.37772 -15.21610 -14.91776 -14.44236 -14.10084 -13.97308 -13.71440 -13.54151 -13.48528 -13.14076 -12.90951 -12.89936 -12.71862 -12.45131 -12.31245 -12.26323 -12.12129 -11.87927 -11.56560 -11.41238 -11.15247 -10.55578 -10.43522 -10.32670 -10.09304 -9.58251 -8.50555 -6.00768 1.36907 1.42416 1.49464 1.57520 1.89304 2.04068 2.28234 2.76491 2.81265 3.14592 3.16725 3.62307 3.69154 3.94953 3.99340 4.17562 4.20623 4.25573 4.41641 4.43452 4.46360 4.47244 4.49156 4.57480 4.66306 4.79137 4.82492 4.88437 4.91000 4.95150 5.11467 5.15106 5.29677 5.39030 5.39629 5.49083 5.83463 5.92580 6.31252 6.48165 6.85513 7.03753 7.40466 7.48161 7.94433 8.66405 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.035697 B = 0.002671 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.194984 B =10479.387656 C =10963.496883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.402 6.402 3 C 0.116 3.884 4 C -0.179 4.179 5 C -0.118 4.118 6 C 0.111 3.889 7 N -0.625 5.625 8 C 0.706 3.294 9 O -0.629 6.629 10 N -0.726 5.726 11 C 0.140 3.860 12 C 0.434 3.566 13 O -0.623 6.623 14 N -0.559 5.559 15 C -0.336 4.336 16 H 0.087 0.913 17 C -0.011 4.011 18 N -0.917 5.917 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.270 1.270 23 C 0.131 3.869 24 C -0.152 4.152 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.409 0.591 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.941 -7.860 -9.387 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.321 6.321 3 C 0.077 3.923 4 C -0.236 4.236 5 C -0.156 4.156 6 C -0.012 4.012 7 N -0.362 5.362 8 C 0.408 3.592 9 O -0.511 6.511 10 N -0.386 5.386 11 C 0.011 3.989 12 C 0.221 3.779 13 O -0.512 6.512 14 N -0.194 5.194 15 C -0.465 4.465 16 H 0.105 0.895 17 C -0.212 4.212 18 N -0.557 5.557 19 Si 0.821 3.179 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.194 1.194 23 C 0.008 3.992 24 C -0.191 4.191 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.249 0.751 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.845 -7.940 -9.192 24.126 hybrid contribution 0.900 0.180 0.282 0.961 sum -19.944 -7.760 -8.910 23.182 Atomic orbital electron populations 1.22961 0.80137 1.03552 1.01106 1.87945 1.21179 1.27843 1.95171 1.21428 0.93077 0.83157 0.94659 1.22494 1.02764 1.01277 0.97035 1.21829 0.93391 0.96589 1.03802 1.21855 0.98560 0.90813 0.89963 1.47311 1.06545 1.53499 1.28843 1.15861 0.81100 0.79725 0.82562 1.90861 1.76342 1.52458 1.31407 1.44907 1.04346 1.54034 1.35279 1.20601 0.86094 0.97717 0.94440 1.20377 0.87479 0.84283 0.85727 1.90462 1.84752 1.44727 1.31216 1.41833 1.05724 1.43433 1.28453 1.19739 0.82562 1.30131 1.14112 0.89505 1.26141 1.04340 0.95276 0.95440 1.69686 1.35589 1.31140 1.19235 0.84861 0.76252 0.78876 0.77957 1.19489 1.19716 1.19429 1.21496 0.77051 0.96940 1.03673 1.22428 1.02284 0.95841 0.98525 0.93217 0.92380 0.89007 0.91195 0.90756 0.90437 0.88455 0.92428 0.88311 0.90149 0.75068 0.88883 0.89257 0.76698 0.91076 0.90216 0.88935 0.88170 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.21 113.37 1.16 1.37 16 2 O -0.40 -7.38 10.35 -148.98 -1.54 -8.92 16 3 C 0.12 1.88 0.88 -10.77 -0.01 1.87 16 4 C -0.18 -2.07 7.49 71.98 0.54 -1.53 16 5 C -0.12 -2.16 5.27 30.67 0.16 -2.00 16 6 C 0.11 2.16 5.92 86.36 0.51 2.67 16 7 N -0.62 -15.37 2.98 -837.77 -2.50 -17.86 16 8 C 0.71 23.44 8.30 179.06 1.49 24.92 16 9 O -0.63 -24.86 15.77 -3.98 -0.06 -24.92 16 10 N -0.73 -24.95 5.44 -482.32 -2.62 -27.57 16 11 C 0.14 5.27 6.16 85.63 0.53 5.80 16 12 C 0.43 20.19 7.85 87.66 0.69 20.88 16 13 O -0.62 -32.15 15.24 -3.08 -0.05 -32.20 16 14 N -0.56 -28.20 5.29 -306.98 -1.62 -29.83 16 15 C -0.34 -18.52 9.68 84.04 0.81 -17.71 16 16 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 17 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 18 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 19 Si 1.00 41.73 29.55 68.60 2.03 43.76 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 C 0.13 2.58 5.95 86.22 0.51 3.10 16 24 C -0.15 -2.57 4.70 30.53 0.14 -2.43 16 25 H 0.05 0.52 6.38 -2.39 -0.02 0.50 16 26 H 0.06 0.51 6.42 -2.39 -0.02 0.50 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.67 6.54 -2.39 -0.02 0.66 16 30 H 0.08 0.85 4.99 -2.39 -0.01 0.84 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.48 6.69 -2.39 -0.02 1.47 16 34 H 0.08 1.76 5.64 -2.39 -0.01 1.74 16 35 H 0.41 13.70 4.93 -92.71 -0.46 13.24 16 36 H 0.09 3.32 8.14 -2.38 -0.02 3.30 16 37 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 39 H 0.28 13.93 8.31 -92.70 -0.77 13.16 16 40 H 0.08 1.90 6.99 -2.39 -0.02 1.88 16 41 H 0.09 1.38 6.70 -2.39 -0.02 1.36 16 42 H 0.10 1.24 6.47 -2.39 -0.02 1.23 16 43 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -68.60 339.01 0.79 -67.81 By element: Atomic # 1 Polarization: 41.59 SS G_CDS: -0.13 Total: 41.46 kcal Atomic # 6 Polarization: 29.82 SS G_CDS: 7.00 Total: 36.82 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -6.46 Total: -123.81 kcal Atomic # 8 Polarization: -64.39 SS G_CDS: -1.65 Total: -66.04 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -68.60 0.79 -67.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324011292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.590 kcal (2) G-P(sol) polarization free energy of solvation -68.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds