Wall clock time and date at job start Tue Mar 31 2020 04:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99671 * 2 1 4 4 H 1.48500 * 109.47517 * 269.99836 * 3 2 1 5 5 H 1.48496 * 109.47375 * 30.00367 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00063 * 3 2 1 7 7 C 1.38945 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00271 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99860 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99634 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00456 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99675 * 179.72687 * 10 9 7 13 13 N 1.46499 * 109.47257 * 180.27849 * 12 10 9 14 14 C 1.34775 * 120.00181 * 179.97438 * 13 12 10 15 15 O 1.21589 * 120.00310 * 0.02562 * 14 13 12 16 16 N 1.34782 * 120.00074 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00016 * 180.02562 * 16 14 13 18 18 H 1.08997 * 110.01459 * 33.60872 * 17 16 14 19 19 C 1.54264 * 110.03016 * 272.16872 * 17 16 14 20 20 C 1.54893 * 104.19316 * 217.10547 * 19 17 16 21 21 C 1.54892 * 102.74865 * 37.94268 * 20 19 17 22 22 C 1.53874 * 110.02865 * 155.00370 * 17 16 14 23 23 H 1.09008 * 110.02598 * 238.56566 * 22 17 16 24 24 C 1.52992 * 110.03597 * 359.94599 * 22 17 16 25 25 C 1.53004 * 109.47420 * 184.99980 * 24 22 17 26 26 O 1.42900 * 109.47250 * 179.97438 * 25 24 22 27 27 H 0.97004 * 120.00488 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99881 * 0.02562 * 9 7 2 29 29 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 30 30 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 31 31 H 0.97002 * 119.99778 * 0.02562 * 13 12 10 32 32 H 0.97002 * 119.99885 * 0.02562 * 16 14 13 33 33 H 1.09000 * 110.48831 * 335.78239 * 19 17 16 34 34 H 1.08995 * 110.48598 * 98.42819 * 19 17 16 35 35 H 1.09000 * 110.75799 * 279.62587 * 20 19 17 36 36 H 1.08998 * 110.75663 * 156.25913 * 20 19 17 37 37 H 1.08997 * 110.48687 * 203.37682 * 21 20 19 38 38 H 1.09008 * 110.59655 * 80.79117 * 21 20 19 39 39 H 1.09003 * 109.47605 * 305.00426 * 24 22 17 40 40 H 1.09001 * 109.46760 * 65.00611 * 24 22 17 41 41 H 1.09003 * 109.47095 * 300.00759 * 25 24 22 42 42 H 1.09001 * 109.46639 * 60.00557 * 25 24 22 43 43 H 0.96701 * 113.99545 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5455 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2032 -0.0011 10 6 4.0537 -2.3704 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5607 -2.3704 -0.0079 13 7 6.0491 -3.7516 -0.0132 14 6 7.3741 -3.9978 -0.0203 15 8 8.1643 -3.0736 -0.0217 16 7 7.8234 -5.2685 -0.0246 17 6 9.2638 -5.5362 -0.0317 18 1 9.7890 -4.7668 0.5341 19 6 9.7866 -5.5761 -1.4825 20 6 10.8550 -6.6975 -1.4704 21 6 10.2296 -7.7554 -0.5276 22 6 9.5453 -6.9218 0.5754 23 1 10.2080 -6.8248 1.4354 24 6 8.2331 -7.5855 0.9975 25 6 8.5353 -8.9048 1.7111 26 8 7.3097 -9.5244 2.1060 27 1 -0.4851 0.8400 -0.0004 28 1 3.8648 -0.3631 -0.0007 29 1 5.9201 -1.8545 -0.8984 30 1 5.9281 -1.8586 0.8816 31 1 5.4188 -4.4889 -0.0124 32 1 7.1931 -6.0058 -0.0231 33 1 8.9800 -5.8252 -2.1720 34 1 10.2386 -4.6215 -1.7516 35 1 11.7976 -6.3287 -1.0659 36 1 10.9966 -7.1070 -2.4706 37 1 11.0048 -8.3911 -0.0998 38 1 9.4948 -8.3582 -1.0614 39 1 7.6915 -6.9230 1.6727 40 1 7.6245 -7.7812 0.1147 41 1 9.0770 -9.5673 1.0359 42 1 9.1439 -8.7091 2.5940 43 1 7.4254 -10.3673 2.5657 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326920358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:44 Heat of formation + Delta-G solvation = -122.770147 kcal Electronic energy + Delta-G solvation = -24240.133765 eV Core-core repulsion = 20513.034739 eV Total energy + Delta-G solvation = -3727.099026 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41444 -38.96159 -38.12032 -36.96457 -34.45154 -33.75570 -33.54537 -32.38574 -31.77139 -28.55288 -27.23110 -26.75756 -24.20785 -23.12090 -21.15751 -20.87580 -19.68685 -19.37984 -18.81338 -18.16822 -17.64198 -16.23488 -16.10240 -15.59956 -15.47854 -15.43696 -14.94367 -14.80120 -14.47242 -14.15114 -13.90778 -13.68971 -13.50558 -13.11384 -12.46454 -12.45279 -12.31977 -12.13204 -12.09851 -11.83204 -11.33820 -11.21664 -11.11171 -11.08073 -10.97660 -10.83844 -10.62167 -10.27684 -10.05931 -10.02419 -9.67331 -9.14252 -8.73620 -8.63724 -8.27936 -6.38517 -3.91002 2.80581 3.01760 3.06387 3.14326 3.36710 3.60844 3.78229 4.05672 4.18980 4.27822 4.35528 4.61507 4.67439 4.75455 4.84120 5.04307 5.12117 5.16064 5.16594 5.25291 5.27350 5.34700 5.42391 5.55641 5.66673 5.69730 5.73843 5.81754 5.82855 5.89080 5.96904 6.00482 6.08073 6.58623 6.68992 7.08844 7.29383 7.47599 8.02996 8.21946 8.47143 8.78536 8.84298 9.32444 9.66523 10.73742 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.002805 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.173579 B = 9978.098562 C =10912.580588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.439 3.561 11 O -0.579 6.579 12 C 0.126 3.874 13 N -0.726 5.726 14 C 0.704 3.296 15 O -0.599 6.599 16 N -0.745 5.745 17 C 0.167 3.833 18 H 0.093 0.907 19 C -0.136 4.136 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.097 4.097 23 H 0.084 0.916 24 C -0.121 4.121 25 C 0.077 3.923 26 O -0.574 6.574 27 H 0.275 0.725 28 H 0.374 0.626 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.407 0.593 32 H 0.399 0.601 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.468 -15.263 0.697 27.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.225 3.775 11 O -0.463 6.463 12 C -0.002 4.002 13 N -0.383 5.383 14 C 0.404 3.596 15 O -0.479 6.479 16 N -0.403 5.403 17 C 0.061 3.939 18 H 0.111 0.889 19 C -0.175 4.175 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.116 4.116 23 H 0.102 0.898 24 C -0.159 4.159 25 C -0.001 4.001 26 O -0.379 6.379 27 H 0.086 0.914 28 H 0.208 0.792 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.245 0.755 32 H 0.236 0.764 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 22.272 -14.423 0.421 26.538 hybrid contribution 0.179 0.274 0.282 0.432 sum 22.451 -14.149 0.703 26.547 Atomic orbital electron populations 1.69617 1.05716 1.27781 1.48336 1.25060 0.95527 0.98159 0.97176 0.86668 0.79929 0.83761 0.79127 1.19405 1.20021 1.19192 1.19442 0.78983 0.96787 1.48583 0.86102 1.42116 1.07673 1.06134 1.65574 1.19679 0.88135 0.84857 0.84846 1.90539 1.69274 1.30917 1.55545 1.20791 0.93272 0.82987 1.03168 1.44766 1.05299 1.09247 1.79012 1.15897 0.82501 0.83419 0.77779 1.90888 1.55137 1.43266 1.58566 1.45461 1.07784 1.06341 1.80709 1.21401 0.80164 0.96109 0.96234 0.88915 1.22836 0.98623 0.99233 0.96821 1.22461 0.98283 0.95826 0.99624 1.22496 0.99623 0.97508 0.96231 1.21996 0.96637 0.94240 0.98710 0.89794 1.21617 0.97631 0.95574 1.01040 1.22188 0.86027 0.94248 0.97598 1.86514 1.31397 1.40274 1.79737 0.91413 0.79238 0.89929 0.89945 0.75507 0.76379 0.91059 0.90928 0.91264 0.91346 0.91470 0.91158 0.90261 0.90787 0.93581 0.93750 0.77421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.22 13.96 55.50 0.77 -24.45 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.34 6.52 56.52 0.37 -4.98 16 7 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.58 -13.61 5.09 -10.96 -0.06 -13.67 16 10 C 0.44 9.83 7.85 -10.98 -0.09 9.74 16 11 O -0.58 -14.84 15.24 5.55 0.08 -14.75 16 12 C 0.13 2.27 6.15 -5.19 -0.03 2.23 16 13 N -0.73 -12.03 5.53 -66.41 -0.37 -12.40 16 14 C 0.70 11.19 8.56 -86.91 -0.74 10.44 16 15 O -0.60 -11.31 16.00 5.29 0.08 -11.23 16 16 N -0.75 -8.84 4.39 -57.58 -0.25 -9.09 16 17 C 0.17 1.68 3.23 -66.81 -0.22 1.46 16 18 H 0.09 1.09 7.56 -51.93 -0.39 0.69 16 19 C -0.14 -1.27 6.53 -25.07 -0.16 -1.44 16 20 C -0.12 -0.84 6.91 -24.73 -0.17 -1.01 16 21 C -0.12 -0.74 5.54 -25.07 -0.14 -0.87 16 22 C -0.10 -0.71 2.93 -89.51 -0.26 -0.97 16 23 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 24 C -0.12 -0.97 3.58 -26.73 -0.10 -1.07 16 25 C 0.08 0.54 6.90 37.16 0.26 0.80 16 26 O -0.57 -4.96 13.66 -35.23 -0.48 -5.44 16 27 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 29 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.41 6.68 7.45 -40.82 -0.30 6.38 16 32 H 0.40 4.15 5.91 -40.82 -0.24 3.91 16 33 H 0.07 0.71 8.05 -51.93 -0.42 0.30 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.44 7.76 -51.92 -0.40 0.04 16 39 H 0.08 0.77 7.42 -51.93 -0.39 0.38 16 40 H 0.07 0.62 7.10 -51.93 -0.37 0.25 16 41 H 0.05 0.26 7.51 -51.93 -0.39 -0.13 16 42 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.38 1.53 9.12 45.56 0.42 1.95 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -34.41 350.67 -7.21 -41.62 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -5.66 Total: 17.97 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -1.90 Total: 11.66 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.10 Total: -59.60 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.31 Total: -31.42 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.41 -7.21 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326920358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.153 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds