Wall clock time and date at job start Tue Mar 31 2020 04:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99671 * 2 1 4 4 H 1.48500 * 109.47517 * 269.99836 * 3 2 1 5 5 H 1.48496 * 109.47375 * 30.00367 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00063 * 3 2 1 7 7 C 1.38945 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00271 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99860 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99634 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00456 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99675 * 179.72687 * 10 9 7 13 13 N 1.46499 * 109.47257 * 180.27849 * 12 10 9 14 14 C 1.34775 * 120.00181 * 179.97438 * 13 12 10 15 15 O 1.21589 * 120.00310 * 0.02562 * 14 13 12 16 16 N 1.34782 * 120.00074 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00016 * 180.02562 * 16 14 13 18 18 H 1.08997 * 110.01459 * 33.60872 * 17 16 14 19 19 C 1.54264 * 110.03016 * 272.16872 * 17 16 14 20 20 C 1.54893 * 104.19316 * 217.10547 * 19 17 16 21 21 C 1.54892 * 102.74865 * 37.94268 * 20 19 17 22 22 C 1.53874 * 110.02865 * 155.00370 * 17 16 14 23 23 H 1.09008 * 110.02598 * 238.56566 * 22 17 16 24 24 C 1.52992 * 110.03597 * 359.94599 * 22 17 16 25 25 C 1.53004 * 109.47420 * 184.99980 * 24 22 17 26 26 O 1.42900 * 109.47250 * 179.97438 * 25 24 22 27 27 H 0.97004 * 120.00488 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99881 * 0.02562 * 9 7 2 29 29 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 30 30 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 31 31 H 0.97002 * 119.99778 * 0.02562 * 13 12 10 32 32 H 0.97002 * 119.99885 * 0.02562 * 16 14 13 33 33 H 1.09000 * 110.48831 * 335.78239 * 19 17 16 34 34 H 1.08995 * 110.48598 * 98.42819 * 19 17 16 35 35 H 1.09000 * 110.75799 * 279.62587 * 20 19 17 36 36 H 1.08998 * 110.75663 * 156.25913 * 20 19 17 37 37 H 1.08997 * 110.48687 * 203.37682 * 21 20 19 38 38 H 1.09008 * 110.59655 * 80.79117 * 21 20 19 39 39 H 1.09003 * 109.47605 * 305.00426 * 24 22 17 40 40 H 1.09001 * 109.46760 * 65.00611 * 24 22 17 41 41 H 1.09003 * 109.47095 * 300.00759 * 25 24 22 42 42 H 1.09001 * 109.46639 * 60.00557 * 25 24 22 43 43 H 0.96701 * 113.99545 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5455 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2032 -0.0011 10 6 4.0537 -2.3704 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5607 -2.3704 -0.0079 13 7 6.0491 -3.7516 -0.0132 14 6 7.3741 -3.9978 -0.0203 15 8 8.1643 -3.0736 -0.0217 16 7 7.8234 -5.2685 -0.0246 17 6 9.2638 -5.5362 -0.0317 18 1 9.7890 -4.7668 0.5341 19 6 9.7866 -5.5761 -1.4825 20 6 10.8550 -6.6975 -1.4704 21 6 10.2296 -7.7554 -0.5276 22 6 9.5453 -6.9218 0.5754 23 1 10.2080 -6.8248 1.4354 24 6 8.2331 -7.5855 0.9975 25 6 8.5353 -8.9048 1.7111 26 8 7.3097 -9.5244 2.1060 27 1 -0.4851 0.8400 -0.0004 28 1 3.8648 -0.3631 -0.0007 29 1 5.9201 -1.8545 -0.8984 30 1 5.9281 -1.8586 0.8816 31 1 5.4188 -4.4889 -0.0124 32 1 7.1931 -6.0058 -0.0231 33 1 8.9800 -5.8252 -2.1720 34 1 10.2386 -4.6215 -1.7516 35 1 11.7976 -6.3287 -1.0659 36 1 10.9966 -7.1070 -2.4706 37 1 11.0048 -8.3911 -0.0998 38 1 9.4948 -8.3582 -1.0614 39 1 7.6915 -6.9230 1.6727 40 1 7.6245 -7.7812 0.1147 41 1 9.0770 -9.5673 1.0359 42 1 9.1439 -8.7091 2.5940 43 1 7.4254 -10.3673 2.5657 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326920358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:44 Heat of formation + Delta-G solvation = -151.847118 kcal Electronic energy + Delta-G solvation = -24241.394637 eV Core-core repulsion = 20513.034739 eV Total energy + Delta-G solvation = -3728.359898 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.50838 -40.42536 -39.40333 -37.58355 -36.28090 -35.28540 -34.61591 -33.82821 -33.03202 -29.82110 -28.10324 -27.69327 -26.03921 -23.74352 -22.26010 -21.58709 -21.47451 -20.66295 -20.12466 -19.61179 -18.33006 -17.51379 -17.26616 -16.91636 -16.80467 -16.51960 -16.10810 -15.88116 -15.76950 -15.51349 -15.00589 -14.88558 -14.46268 -14.32071 -14.15602 -13.98965 -13.73937 -13.08133 -12.98636 -12.90070 -12.62895 -12.45023 -12.00351 -11.92751 -11.73858 -11.72408 -11.58476 -11.56809 -11.47685 -11.35841 -10.81276 -10.66002 -10.39270 -10.31597 -9.79237 -8.45893 -6.07996 1.31159 1.33998 1.43751 1.61743 1.78391 2.12123 2.20391 2.78647 3.10331 3.19365 3.38305 3.56202 3.66408 3.99468 4.06666 4.16427 4.27513 4.38807 4.43928 4.46623 4.48943 4.53963 4.62267 4.64623 4.77873 4.79573 4.99423 5.08547 5.14556 5.23491 5.23961 5.28585 5.34085 5.48418 5.49825 5.64307 5.87749 5.94884 6.48628 6.77645 6.93759 7.00118 7.28063 7.53443 7.77892 8.70649 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.002805 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.173579 B = 9978.098562 C =10912.580588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.332 4.332 8 H 0.063 0.937 9 N -0.577 5.577 10 C 0.445 3.555 11 O -0.615 6.615 12 C 0.139 3.861 13 N -0.729 5.729 14 C 0.704 3.296 15 O -0.628 6.628 16 N -0.730 5.730 17 C 0.160 3.840 18 H 0.076 0.924 19 C -0.136 4.136 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.086 4.086 23 H 0.096 0.904 24 C -0.121 4.121 25 C 0.077 3.923 26 O -0.602 6.602 27 H 0.281 0.719 28 H 0.392 0.608 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.408 0.592 32 H 0.407 0.593 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.605 -15.181 0.782 29.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.779 3.221 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.461 4.461 8 H 0.081 0.919 9 N -0.217 5.217 10 C 0.233 3.767 11 O -0.501 6.501 12 C 0.010 3.990 13 N -0.387 5.387 14 C 0.403 3.597 15 O -0.510 6.510 16 N -0.388 5.388 17 C 0.055 3.945 18 H 0.094 0.906 19 C -0.175 4.175 20 C -0.155 4.155 21 C -0.152 4.152 22 C -0.105 4.105 23 H 0.115 0.885 24 C -0.159 4.159 25 C 0.000 4.000 26 O -0.410 6.410 27 H 0.091 0.909 28 H 0.228 0.772 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.245 0.755 32 H 0.245 0.755 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 25.444 -14.401 0.513 29.241 hybrid contribution -0.831 0.095 0.258 0.876 sum 24.613 -14.306 0.771 28.479 Atomic orbital electron populations 1.69779 1.08044 1.29481 1.49297 1.26068 0.96433 1.02604 0.95676 0.85436 0.79561 0.76974 0.80099 1.18039 1.19779 1.15615 1.19033 0.80959 0.95281 1.50804 0.91907 1.41913 1.06124 1.07396 1.66309 1.20514 0.90054 0.83870 0.82275 1.90526 1.70808 1.32350 1.56372 1.20684 0.89190 0.84206 1.04890 1.44753 1.05715 1.08744 1.79472 1.15995 0.81808 0.84263 0.77585 1.90865 1.55617 1.44459 1.60066 1.45462 1.08942 1.05171 1.79222 1.21615 0.78605 0.97413 0.96911 0.90602 1.22796 0.99196 0.99649 0.95900 1.22445 0.97654 0.94878 1.00532 1.22484 1.00022 0.97229 0.95446 1.21937 0.96592 0.92473 0.99492 0.88527 1.21589 0.97676 0.96132 1.00510 1.22237 0.85713 0.93766 0.98330 1.86460 1.32622 1.41708 1.80238 0.90896 0.77196 0.88037 0.88143 0.75497 0.75456 0.91887 0.92513 0.90400 0.90416 0.89260 0.91049 0.92329 0.91348 0.91673 0.92692 0.75338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.93 13.96 21.66 0.30 -54.63 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 3 Si 0.96 38.57 27.74 68.60 1.90 40.47 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.23 -8.02 6.52 99.48 0.65 -7.38 16 7 C -0.33 -19.10 10.16 84.04 0.85 -18.24 16 8 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 9 N -0.58 -27.05 5.09 -306.98 -1.56 -28.61 16 10 C 0.45 19.92 7.85 87.66 0.69 20.61 16 11 O -0.61 -32.42 15.24 -3.07 -0.05 -32.46 16 12 C 0.14 4.76 6.15 85.63 0.53 5.29 16 13 N -0.73 -23.71 5.53 -482.29 -2.67 -26.38 16 14 C 0.70 21.90 8.56 179.05 1.53 23.43 16 15 O -0.63 -23.20 16.00 -3.99 -0.06 -23.27 16 16 N -0.73 -16.97 4.39 -454.35 -1.99 -18.97 16 17 C 0.16 3.07 3.23 45.71 0.15 3.21 16 18 H 0.08 1.74 7.56 -2.39 -0.02 1.72 16 19 C -0.14 -2.42 6.53 31.67 0.21 -2.22 16 20 C -0.12 -1.31 6.91 31.89 0.22 -1.09 16 21 C -0.11 -1.05 5.54 31.67 0.18 -0.87 16 22 C -0.09 -1.08 2.93 -10.07 -0.03 -1.11 16 23 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 24 C -0.12 -1.78 3.58 30.59 0.11 -1.68 16 25 C 0.08 0.91 6.90 71.98 0.50 1.41 16 26 O -0.60 -9.57 13.66 -148.98 -2.04 -11.61 16 27 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.39 15.44 5.76 -92.71 -0.53 14.91 16 29 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 30 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.41 13.38 7.45 -92.71 -0.69 12.69 16 32 H 0.41 8.32 5.91 -92.71 -0.55 7.77 16 33 H 0.06 1.22 8.05 -2.39 -0.02 1.20 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.07 0.68 7.76 -2.38 -0.02 0.66 16 39 H 0.06 1.10 7.42 -2.39 -0.02 1.09 16 40 H 0.07 1.07 7.10 -2.39 -0.02 1.05 16 41 H 0.07 0.53 7.51 -2.39 -0.02 0.51 16 42 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.40 2.60 9.12 -74.06 -0.68 1.93 16 Total: -1.00 -77.90 350.67 -2.21 -80.11 By element: Atomic # 1 Polarization: 47.99 SS G_CDS: -1.44 Total: 46.55 kcal Atomic # 6 Polarization: 23.39 SS G_CDS: 5.40 Total: 28.79 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -5.92 Total: -128.58 kcal Atomic # 8 Polarization: -65.19 SS G_CDS: -2.15 Total: -67.33 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.90 Total: 40.47 kcal Total: -77.90 -2.21 -80.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326920358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.734 kcal (2) G-P(sol) polarization free energy of solvation -77.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds