Wall clock time and date at job start Tue Mar 31 2020 04:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47194 * 120.00507 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00070 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46872 * 180.02562 * 12 10 9 14 14 C 1.34782 * 119.99625 * 180.02562 * 13 12 10 15 15 O 1.21591 * 119.99900 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99814 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99707 * 179.97438 * 16 14 13 18 18 H 1.08994 * 110.01603 * 326.38946 * 17 16 14 19 19 C 1.53874 * 110.03474 * 87.83192 * 17 16 14 20 20 C 1.54265 * 106.60229 * 119.28077 * 19 17 16 21 21 C 1.54893 * 104.19519 * 336.39147 * 20 19 17 22 22 C 1.54268 * 110.03091 * 204.99768 * 17 16 14 23 23 H 1.08997 * 110.48698 * 145.64576 * 22 17 16 24 24 C 1.53006 * 110.48561 * 23.00253 * 22 17 16 25 25 C 1.52995 * 109.46972 * 175.00312 * 24 22 17 26 26 O 1.42893 * 109.47222 * 180.02562 * 25 24 22 27 27 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46986 * 300.00334 * 12 10 9 30 30 H 1.09000 * 109.46827 * 60.00337 * 12 10 9 31 31 H 0.97000 * 120.00614 * 359.97438 * 13 12 10 32 32 H 0.96997 * 119.99867 * 359.97438 * 16 14 13 33 33 H 1.08997 * 110.03082 * 238.57011 * 19 17 16 34 34 H 1.09005 * 110.02839 * 359.97438 * 19 17 16 35 35 H 1.08999 * 110.49074 * 217.71729 * 20 19 17 36 36 H 1.08998 * 110.59634 * 95.12487 * 20 19 17 37 37 H 1.08998 * 110.75559 * 279.62846 * 21 20 19 38 38 H 1.08993 * 110.75814 * 156.25139 * 21 20 19 39 39 H 1.09003 * 109.46922 * 294.99783 * 24 22 17 40 40 H 1.08997 * 109.46972 * 55.00327 * 24 22 17 41 41 H 1.09006 * 109.47293 * 299.99783 * 25 24 22 42 42 H 1.09002 * 109.47535 * 59.99509 * 25 24 22 43 43 H 0.96705 * 114.00627 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1020 1.6964 1.2124 6 1 3.1018 1.6964 -1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 7 2.1959 -5.9764 0.0027 14 6 1.7466 -7.2472 0.0027 15 8 0.5512 -7.4693 0.0028 16 7 2.6225 -8.2716 0.0027 17 6 2.1341 -9.6528 0.0033 18 1 1.2059 -9.7200 0.5706 19 6 1.9062 -10.1320 -1.4411 20 6 2.8382 -11.3423 -1.6562 21 6 3.9631 -11.1461 -0.6096 22 6 3.1967 -10.5886 0.6156 23 1 2.7193 -11.3982 1.1677 24 6 4.1420 -9.8023 1.5261 25 6 5.1062 -10.7688 2.2167 26 8 5.9887 -10.0346 3.0676 27 1 -0.4850 0.8401 0.0004 28 1 0.3534 -2.3906 0.0024 29 1 0.6175 -4.9205 0.8924 30 1 0.6169 -4.9209 -0.8876 31 1 3.1496 -5.7992 0.0022 32 1 3.5761 -8.0943 0.0022 33 1 0.8671 -10.4324 -1.5752 34 1 2.1586 -9.3366 -2.1425 35 1 3.2501 -11.3321 -2.6653 36 1 2.3045 -12.2747 -1.4724 37 1 4.6999 -10.4257 -0.9648 38 1 4.4367 -12.0978 -0.3686 39 1 4.7092 -9.0872 0.9302 40 1 3.5614 -9.2687 2.2786 41 1 4.5390 -11.4840 2.8126 42 1 5.6868 -11.3026 1.4643 43 1 6.6290 -10.5849 3.5391 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326920359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:50 Heat of formation + Delta-G solvation = -132.940175 kcal Electronic energy + Delta-G solvation = -24200.387817 eV Core-core repulsion = 20472.847786 eV Total energy + Delta-G solvation = -3727.540031 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.33037 -38.81764 -37.95458 -36.95404 -34.36798 -33.63709 -33.36802 -32.39735 -31.33905 -28.44930 -27.23467 -26.67039 -24.37358 -22.92504 -21.10537 -20.74639 -19.69112 -19.40149 -18.50369 -17.98124 -17.61772 -16.16168 -15.91187 -15.54342 -15.41687 -15.34526 -14.84769 -14.53858 -14.49793 -14.11828 -13.87496 -13.70487 -13.49716 -13.40802 -12.50568 -12.14149 -12.10862 -11.94218 -11.72415 -11.60139 -11.35972 -11.14335 -11.08216 -11.04296 -10.87059 -10.78377 -10.48582 -10.28836 -10.23245 -9.95597 -9.59615 -9.08645 -8.58714 -8.54868 -8.06793 -6.48414 -3.90383 2.88434 3.16005 3.23398 3.27634 3.45297 3.78976 3.80452 4.11848 4.21856 4.34029 4.49222 4.63456 4.79953 4.90307 4.94439 5.07784 5.14265 5.19132 5.20260 5.29505 5.33795 5.38794 5.47817 5.57645 5.69936 5.79737 5.90578 5.92302 5.99728 6.04305 6.05195 6.12334 6.14812 6.65368 6.81420 7.16957 7.31807 7.48690 7.95527 8.30100 8.48772 8.86596 9.07705 9.42952 9.91109 10.68517 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.021583 B = 0.002699 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.003407 B =10373.480472 C =11216.015597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.283 1.283 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.550 5.550 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.704 3.296 15 O -0.599 6.599 16 N -0.743 5.743 17 C 0.167 3.833 18 H 0.092 0.908 19 C -0.136 4.136 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.097 4.097 23 H 0.089 0.911 24 C -0.113 4.113 25 C 0.076 3.924 26 O -0.574 6.574 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.406 0.594 32 H 0.396 0.604 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.683 -23.826 0.734 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.122 0.878 9 N -0.185 5.185 10 C 0.215 3.785 11 O -0.484 6.484 12 C 0.000 4.000 13 N -0.382 5.382 14 C 0.404 3.596 15 O -0.478 6.478 16 N -0.400 5.400 17 C 0.061 3.939 18 H 0.110 0.890 19 C -0.175 4.175 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.116 4.116 23 H 0.107 0.893 24 C -0.151 4.151 25 C -0.001 4.001 26 O -0.379 6.379 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.243 0.757 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.867 -23.298 0.502 24.030 hybrid contribution 0.922 0.554 0.163 1.088 sum 6.788 -22.744 0.665 23.744 Atomic orbital electron populations 1.69610 1.06000 1.28587 1.49376 1.25320 0.95659 0.99897 0.96836 0.85876 0.78772 0.80191 0.79141 1.20869 1.19781 1.19802 1.19681 0.93427 0.82042 1.48310 0.87755 1.41779 1.09476 1.04436 1.62769 1.19782 0.88300 0.85033 0.85412 1.90490 1.13768 1.86873 1.57280 1.20771 0.91232 0.84884 1.03066 1.44784 1.11180 1.03386 1.78887 1.15891 0.85283 0.80600 0.77837 1.90894 1.14081 1.84271 1.58537 1.45304 1.09043 1.04794 1.80835 1.21351 0.97199 0.79367 0.95949 0.89026 1.22641 1.00093 0.97956 0.96838 1.22350 0.96503 0.98239 0.99078 1.22651 0.97628 1.00885 0.94826 1.22249 0.95672 0.97739 0.95962 0.89297 1.21494 0.96656 0.98130 0.98782 1.22209 0.91601 0.93862 0.92464 1.86520 1.50193 1.38498 1.62710 0.91562 0.77020 0.90074 0.90081 0.75660 0.76816 0.91091 0.90998 0.91592 0.91544 0.91131 0.91427 0.91015 0.90551 0.93808 0.93621 0.77502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.31 -8.40 9.68 -14.93 -0.14 -8.55 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.86 5.29 -10.96 -0.06 -13.92 16 10 C 0.43 10.05 7.85 -10.98 -0.09 9.96 16 11 O -0.60 -15.54 15.24 5.55 0.08 -15.46 16 12 C 0.13 2.47 6.15 -5.19 -0.03 2.44 16 13 N -0.73 -12.58 5.53 -66.41 -0.37 -12.95 16 14 C 0.70 11.65 8.56 -86.91 -0.74 10.90 16 15 O -0.60 -11.81 16.00 5.29 0.08 -11.73 16 16 N -0.74 -9.09 4.35 -57.58 -0.25 -9.34 16 17 C 0.17 1.74 3.12 -66.81 -0.21 1.53 16 18 H 0.09 1.12 7.56 -51.93 -0.39 0.72 16 19 C -0.14 -1.32 6.59 -25.61 -0.17 -1.49 16 20 C -0.12 -0.88 6.83 -25.07 -0.17 -1.05 16 21 C -0.12 -0.80 5.67 -24.73 -0.14 -0.94 16 22 C -0.10 -0.73 2.81 -88.95 -0.25 -0.98 16 23 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 24 C -0.11 -0.96 4.12 -26.73 -0.11 -1.07 16 25 C 0.08 0.56 6.93 37.16 0.26 0.81 16 26 O -0.57 -5.14 13.66 -35.23 -0.48 -5.63 16 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.40 9.61 7.90 -40.82 -0.32 9.29 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.41 6.91 7.45 -40.82 -0.30 6.60 16 32 H 0.40 4.20 6.57 -40.82 -0.27 3.94 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.49 7.97 -51.93 -0.41 0.07 16 38 H 0.07 0.36 8.06 -51.93 -0.42 -0.06 16 39 H 0.07 0.64 6.41 -51.93 -0.33 0.31 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.05 0.27 7.55 -51.93 -0.39 -0.12 16 43 H 0.38 1.61 9.12 45.56 0.42 2.02 16 LS Contribution 354.92 15.07 5.35 5.35 Total: -1.00 -33.37 354.92 -7.57 -40.93 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -5.73 Total: 18.31 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: -1.89 Total: 12.15 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.05 Total: -59.67 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.31 Total: -32.81 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.37 -7.57 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326920359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.008 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds