Wall clock time and date at job start Tue Mar 31 2020 04:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47194 * 120.00507 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00070 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46872 * 180.02562 * 12 10 9 14 14 C 1.34782 * 119.99625 * 180.02562 * 13 12 10 15 15 O 1.21591 * 119.99900 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99814 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99707 * 179.97438 * 16 14 13 18 18 H 1.08994 * 110.01603 * 326.38946 * 17 16 14 19 19 C 1.53874 * 110.03474 * 87.83192 * 17 16 14 20 20 C 1.54265 * 106.60229 * 119.28077 * 19 17 16 21 21 C 1.54893 * 104.19519 * 336.39147 * 20 19 17 22 22 C 1.54268 * 110.03091 * 204.99768 * 17 16 14 23 23 H 1.08997 * 110.48698 * 145.64576 * 22 17 16 24 24 C 1.53006 * 110.48561 * 23.00253 * 22 17 16 25 25 C 1.52995 * 109.46972 * 175.00312 * 24 22 17 26 26 O 1.42893 * 109.47222 * 180.02562 * 25 24 22 27 27 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46986 * 300.00334 * 12 10 9 30 30 H 1.09000 * 109.46827 * 60.00337 * 12 10 9 31 31 H 0.97000 * 120.00614 * 359.97438 * 13 12 10 32 32 H 0.96997 * 119.99867 * 359.97438 * 16 14 13 33 33 H 1.08997 * 110.03082 * 238.57011 * 19 17 16 34 34 H 1.09005 * 110.02839 * 359.97438 * 19 17 16 35 35 H 1.08999 * 110.49074 * 217.71729 * 20 19 17 36 36 H 1.08998 * 110.59634 * 95.12487 * 20 19 17 37 37 H 1.08998 * 110.75559 * 279.62846 * 21 20 19 38 38 H 1.08993 * 110.75814 * 156.25139 * 21 20 19 39 39 H 1.09003 * 109.46922 * 294.99783 * 24 22 17 40 40 H 1.08997 * 109.46972 * 55.00327 * 24 22 17 41 41 H 1.09006 * 109.47293 * 299.99783 * 25 24 22 42 42 H 1.09002 * 109.47535 * 59.99509 * 25 24 22 43 43 H 0.96705 * 114.00627 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1020 1.6964 1.2124 6 1 3.1018 1.6964 -1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 7 2.1959 -5.9764 0.0027 14 6 1.7466 -7.2472 0.0027 15 8 0.5512 -7.4693 0.0028 16 7 2.6225 -8.2716 0.0027 17 6 2.1341 -9.6528 0.0033 18 1 1.2059 -9.7200 0.5706 19 6 1.9062 -10.1320 -1.4411 20 6 2.8382 -11.3423 -1.6562 21 6 3.9631 -11.1461 -0.6096 22 6 3.1967 -10.5886 0.6156 23 1 2.7193 -11.3982 1.1677 24 6 4.1420 -9.8023 1.5261 25 6 5.1062 -10.7688 2.2167 26 8 5.9887 -10.0346 3.0676 27 1 -0.4850 0.8401 0.0004 28 1 0.3534 -2.3906 0.0024 29 1 0.6175 -4.9205 0.8924 30 1 0.6169 -4.9209 -0.8876 31 1 3.1496 -5.7992 0.0022 32 1 3.5761 -8.0943 0.0022 33 1 0.8671 -10.4324 -1.5752 34 1 2.1586 -9.3366 -2.1425 35 1 3.2501 -11.3321 -2.6653 36 1 2.3045 -12.2747 -1.4724 37 1 4.6999 -10.4257 -0.9648 38 1 4.4367 -12.0978 -0.3686 39 1 4.7092 -9.0872 0.9302 40 1 3.5614 -9.2687 2.2786 41 1 4.5390 -11.4840 2.8126 42 1 5.6868 -11.3026 1.4643 43 1 6.6290 -10.5849 3.5391 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326920359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:49 Heat of formation + Delta-G solvation = -160.088828 kcal Electronic energy + Delta-G solvation = -24201.565071 eV Core-core repulsion = 20472.847786 eV Total energy + Delta-G solvation = -3728.717285 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48304 -40.29164 -39.33337 -37.60233 -36.23468 -35.25742 -34.48096 -33.36352 -33.06980 -29.70398 -28.16974 -27.67299 -26.23275 -23.55964 -22.35960 -21.42645 -21.35915 -20.41032 -20.10242 -19.68593 -18.32178 -17.47886 -17.24541 -16.84569 -16.70834 -16.28244 -16.16872 -15.87477 -15.72888 -15.61292 -15.12282 -15.02156 -14.54552 -14.18893 -13.94594 -13.68675 -13.53990 -13.18510 -12.90669 -12.69759 -12.58993 -12.47261 -12.13607 -11.96763 -11.82986 -11.71596 -11.56458 -11.49497 -11.46075 -11.35626 -10.78998 -10.56058 -10.39421 -10.10498 -9.79884 -8.50994 -6.01453 1.38060 1.42138 1.52735 1.64040 1.89725 2.12890 2.28828 3.03829 3.16074 3.22500 3.36782 3.55774 3.68846 4.04561 4.17258 4.21106 4.30295 4.42232 4.45417 4.47507 4.48817 4.59114 4.62867 4.63873 4.78481 4.80653 4.94932 5.09299 5.18640 5.23522 5.27329 5.30534 5.34318 5.38593 5.50869 5.65090 5.91371 5.96854 6.48025 6.94957 7.02597 7.03114 7.42590 7.55045 7.94279 8.65814 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.021583 B = 0.002699 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.003407 B =10373.480472 C =11216.015597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.726 5.726 14 C 0.703 3.297 15 O -0.631 6.631 16 N -0.725 5.725 17 C 0.159 3.841 18 H 0.072 0.928 19 C -0.136 4.136 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.084 4.084 23 H 0.106 0.894 24 C -0.113 4.113 25 C 0.076 3.924 26 O -0.602 6.602 27 H 0.280 0.720 28 H 0.399 0.601 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.408 0.592 32 H 0.406 0.594 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.655 -25.235 0.670 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.512 6.512 12 C 0.014 3.986 13 N -0.384 5.384 14 C 0.403 3.597 15 O -0.513 6.513 16 N -0.382 5.382 17 C 0.054 3.946 18 H 0.090 0.910 19 C -0.175 4.175 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.103 4.103 23 H 0.124 0.876 24 C -0.151 4.151 25 C -0.001 4.001 26 O -0.411 6.411 27 H 0.090 0.910 28 H 0.233 0.767 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.246 0.754 32 H 0.243 0.757 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.864 -24.760 0.442 25.697 hybrid contribution 0.618 0.921 0.197 1.127 sum 7.482 -23.838 0.639 24.993 Atomic orbital electron populations 1.69679 1.07031 1.29725 1.49217 1.26142 0.96541 1.02698 0.95728 0.84924 0.77725 0.76190 0.79123 1.19559 1.19477 1.19447 1.19714 0.92984 0.83559 1.50547 0.89569 1.41825 1.09580 1.04569 1.63458 1.20412 0.88113 0.85904 0.83523 1.90465 1.15183 1.87550 1.58006 1.20570 0.91003 0.83133 1.03924 1.44719 1.10899 1.03396 1.79352 1.16005 0.85271 0.80808 0.77607 1.90869 1.15624 1.84674 1.60139 1.45260 1.09025 1.04728 1.79219 1.21580 0.97608 0.78709 0.96690 0.91012 1.22602 1.00563 0.98714 0.95632 1.22326 0.96107 0.97339 0.99673 1.22644 0.97183 1.01895 0.93631 1.22190 0.94689 0.97109 0.96338 0.87561 1.21470 0.96848 0.98478 0.98323 1.22255 0.91525 0.93366 0.92937 1.86464 1.51093 1.40212 1.63348 0.91033 0.76698 0.89198 0.89112 0.75417 0.75681 0.91748 0.92796 0.91041 0.90080 0.91424 0.89017 0.91764 0.93004 0.92487 0.91646 0.75347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 1.00 42.22 29.55 68.60 2.03 44.25 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.34 -18.96 9.68 84.04 0.81 -18.14 16 8 H 0.09 5.05 7.16 -2.92 -0.02 5.03 16 9 N -0.56 -28.68 5.29 -306.98 -1.62 -30.30 16 10 C 0.43 20.58 7.85 87.66 0.69 21.27 16 11 O -0.62 -32.98 15.24 -3.05 -0.05 -33.02 16 12 C 0.14 5.47 6.15 85.64 0.53 6.00 16 13 N -0.73 -25.31 5.53 -482.27 -2.67 -27.98 16 14 C 0.70 23.42 8.56 179.05 1.53 24.96 16 15 O -0.63 -25.19 16.00 -4.00 -0.06 -25.26 16 16 N -0.73 -17.71 4.35 -454.34 -1.97 -19.68 16 17 C 0.16 3.24 3.12 45.72 0.14 3.38 16 18 H 0.07 1.77 7.56 -2.39 -0.02 1.75 16 19 C -0.14 -2.55 6.59 31.32 0.21 -2.34 16 20 C -0.12 -1.38 6.83 31.67 0.22 -1.17 16 21 C -0.12 -1.17 5.67 31.89 0.18 -0.99 16 22 C -0.08 -1.11 2.81 -9.71 -0.03 -1.13 16 23 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 24 C -0.11 -1.79 4.12 30.59 0.13 -1.67 16 25 C 0.08 0.94 6.93 71.98 0.50 1.44 16 26 O -0.60 -9.90 13.66 -148.98 -2.03 -11.94 16 27 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 29 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.41 13.98 7.45 -92.71 -0.69 13.29 16 32 H 0.41 8.48 6.57 -92.71 -0.61 7.87 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.20 7.92 -2.38 -0.02 1.18 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.75 7.97 -2.39 -0.02 0.73 16 38 H 0.09 0.56 8.06 -2.39 -0.02 0.54 16 39 H 0.06 1.09 6.41 -2.39 -0.02 1.07 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.07 0.55 7.55 -2.39 -0.02 0.54 16 43 H 0.40 2.70 9.12 -74.05 -0.68 2.03 16 Total: -1.00 -71.87 354.92 -2.37 -74.25 By element: Atomic # 1 Polarization: 48.88 SS G_CDS: -1.64 Total: 47.24 kcal Atomic # 6 Polarization: 26.15 SS G_CDS: 5.37 Total: 31.52 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -5.98 Total: -127.03 kcal Atomic # 8 Polarization: -68.07 SS G_CDS: -2.15 Total: -70.22 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -71.87 -2.37 -74.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326920359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.843 kcal (2) G-P(sol) polarization free energy of solvation -71.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds