Wall clock time and date at job start Tue Mar 31 2020 04:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99773 * 2 1 4 4 H 1.48496 * 109.46849 * 269.99682 * 3 2 1 5 5 H 1.48493 * 109.47144 * 29.99870 * 3 2 1 6 6 H 1.48504 * 109.47010 * 149.99881 * 3 2 1 7 7 C 1.38813 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00055 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99818 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47219 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47116 * 59.99715 * 11 10 9 13 13 O 1.42907 * 109.46974 * 299.99967 * 11 10 9 14 14 C 1.53001 * 109.47222 * 180.02562 * 11 10 9 15 15 N 1.46499 * 109.47054 * 184.99905 * 14 11 10 16 16 C 1.34776 * 120.00335 * 179.97438 * 15 14 11 17 17 O 1.21284 * 119.99569 * 359.97438 * 16 15 14 18 18 C 1.50693 * 120.00391 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.47110 * 179.97438 * 18 16 15 20 20 H 1.08993 * 109.13198 * 305.51494 * 19 18 16 21 21 C 1.52740 * 109.39612 * 186.21671 * 19 18 16 22 22 C 1.53347 * 108.82173 * 189.17340 * 21 19 18 23 23 C 1.53069 * 108.42246 * 67.36992 * 22 21 19 24 24 C 1.50171 * 109.89437 * 311.10217 * 23 22 21 25 25 O 1.21289 * 118.24912 * 197.60437 * 24 23 22 26 26 N 1.33358 * 123.50923 * 17.57702 * 24 23 22 27 27 H 0.96997 * 120.00380 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00160 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47309 * 60.00018 * 10 9 7 30 30 H 1.09000 * 109.47797 * 300.00072 * 10 9 7 31 31 H 0.96693 * 113.99836 * 299.99955 * 13 11 10 32 32 H 1.08998 * 109.47025 * 64.99985 * 14 11 10 33 33 H 1.09000 * 109.47284 * 304.99753 * 14 11 10 34 34 H 0.97001 * 120.00232 * 0.02562 * 15 14 11 35 35 H 1.08998 * 109.47531 * 59.99441 * 18 16 15 36 36 H 1.09004 * 109.46708 * 299.99391 * 18 16 15 37 37 H 1.09007 * 109.66459 * 69.29580 * 21 19 18 38 38 H 1.08996 * 109.53630 * 308.97851 * 21 19 18 39 39 H 1.09005 * 109.67579 * 307.64369 * 22 21 19 40 40 H 1.08997 * 109.70847 * 187.12086 * 22 21 19 41 41 H 1.09001 * 109.40157 * 190.97040 * 23 22 21 42 42 H 1.09001 * 109.40003 * 71.23274 * 23 22 21 43 43 H 0.97001 * 117.94627 * 177.77459 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0582 -3.6567 0.0027 11 6 1.0640 -4.8197 0.0031 12 1 0.4376 -4.7626 -0.8871 13 8 0.2419 -4.7433 1.1696 14 6 1.8290 -6.1447 0.0050 15 7 0.8817 -7.2558 -0.1150 16 6 1.3318 -8.5260 -0.1355 17 8 2.5212 -8.7492 -0.0550 18 6 0.3574 -9.6688 -0.2595 19 6 1.1225 -10.9937 -0.2588 20 1 1.8808 -10.9687 -1.0413 21 6 0.1525 -12.1398 -0.5392 22 6 0.8793 -13.4704 -0.3098 23 6 1.1892 -13.6012 1.1835 24 6 1.8266 -12.3376 1.6857 25 8 2.4250 -12.3762 2.7400 26 7 1.7703 -11.1753 1.0342 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0016 29 1 2.6849 -3.7137 0.8928 30 1 2.6849 -3.7154 -0.8872 31 1 0.7337 -4.7880 2.0009 32 1 2.3861 -6.2413 0.9368 33 1 2.5217 -6.1655 -0.8363 34 1 -0.0695 -7.0772 -0.1805 35 1 -0.1998 -9.5718 -1.1912 36 1 -0.3354 -9.6485 0.5819 37 1 -0.1918 -12.0845 -1.5720 38 1 -0.7009 -12.0683 0.1351 39 1 1.8083 -13.4843 -0.8798 40 1 0.2424 -14.2965 -0.6260 41 1 1.8706 -14.4374 1.3400 42 1 0.2641 -13.7823 1.7308 43 1 2.1829 -10.4014 1.4486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667852763.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:46 Heat of formation + Delta-G solvation = -162.211851 kcal Electronic energy + Delta-G solvation = -23875.296766 eV Core-core repulsion = 20146.487420 eV Total energy + Delta-G solvation = -3728.809346 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60560 -40.55881 -39.00240 -37.68736 -36.08326 -35.30316 -34.07674 -33.22454 -32.43843 -30.67297 -28.69151 -26.88972 -24.81236 -23.96806 -23.26657 -22.77055 -21.29586 -20.02177 -19.26655 -18.36823 -18.25754 -17.55845 -17.38184 -17.02697 -16.66123 -16.43903 -16.19636 -15.84101 -15.47041 -15.20609 -14.99339 -14.79629 -14.48659 -14.31783 -14.10703 -14.00665 -13.82275 -13.34735 -12.97656 -12.88293 -12.76340 -12.55262 -12.22381 -12.17799 -11.98156 -11.87988 -11.82284 -11.78481 -11.19639 -11.00076 -10.88711 -10.68224 -10.14509 -10.07622 -9.02905 -7.96656 -5.26175 1.46811 1.48342 1.56854 1.61201 1.62631 2.13168 2.35742 2.54964 3.34292 3.44219 3.54828 3.60505 3.68163 3.71413 3.96524 4.01654 4.08158 4.19465 4.24522 4.31933 4.41406 4.58207 4.61977 4.66781 4.73099 4.75830 4.91287 4.92500 5.01076 5.12524 5.14191 5.19627 5.36145 5.40398 5.46620 5.77035 6.24702 6.42936 6.53579 6.76318 7.18517 7.24291 7.31977 8.07133 8.30529 9.26396 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.043448 B = 0.002140 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.290857 B =13083.801151 C =13288.440019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.120 3.880 11 C 0.109 3.891 12 H 0.105 0.895 13 O -0.563 6.563 14 C 0.102 3.898 15 N -0.712 5.712 16 C 0.503 3.497 17 O -0.585 6.585 18 C -0.147 4.147 19 C 0.150 3.850 20 H 0.074 0.926 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.131 4.131 24 C 0.506 3.494 25 O -0.624 6.624 26 N -0.708 5.708 27 H 0.252 0.748 28 H 0.378 0.622 29 H 0.027 0.973 30 H 0.033 0.967 31 H 0.384 0.616 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.416 0.584 35 H 0.149 0.851 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 -29.006 -4.426 29.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.382 5.382 10 C -0.007 4.007 11 C 0.049 3.951 12 H 0.122 0.878 13 O -0.369 6.369 14 C -0.024 4.024 15 N -0.363 5.363 16 C 0.291 3.709 17 O -0.466 6.466 18 C -0.186 4.186 19 C 0.045 3.955 20 H 0.092 0.908 21 C -0.165 4.165 22 C -0.157 4.157 23 C -0.170 4.170 24 C 0.296 3.704 25 O -0.508 6.508 26 N -0.358 5.358 27 H 0.061 0.939 28 H 0.210 0.790 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.233 0.767 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.253 0.747 35 H 0.166 0.834 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.134 0.866 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.526 -29.219 -4.410 29.759 hybrid contribution 0.659 1.867 0.728 2.109 sum -2.868 -27.352 -3.682 27.747 Atomic orbital electron populations 1.69827 1.06592 1.26137 1.59152 1.25600 0.96437 1.01189 1.03555 0.85126 0.77645 0.79389 0.77493 1.21257 1.22143 1.19534 1.19632 0.91480 0.85390 1.41625 0.90701 1.42401 1.05795 1.00698 1.89355 1.21416 0.94356 0.85962 0.98972 1.22104 0.92176 0.91224 0.89614 0.87756 1.86549 1.37559 1.96418 1.16394 1.21803 0.92283 0.85555 1.02730 1.45874 1.11529 1.05109 1.73831 1.21393 0.89771 0.84744 0.74970 1.90726 1.19064 1.85152 1.51659 1.22207 0.97896 0.90194 1.08353 1.20933 0.95214 0.94951 0.84378 0.90831 1.21978 0.97356 0.91775 1.05409 1.21677 1.01879 0.98992 0.93115 1.21703 1.03016 0.93213 0.99094 1.21082 0.79188 0.86794 0.83386 1.90733 1.46674 1.86816 1.26545 1.45882 1.56632 1.11139 1.22099 0.93942 0.78994 0.95514 0.94918 0.76748 0.91490 0.90692 0.74656 0.83367 0.86365 0.86621 0.89408 0.91556 0.87523 0.88245 0.86570 0.77413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 2 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 3 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 4 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -36.87 5.49 -343.44 -1.89 -38.76 16 10 C 0.12 4.47 5.92 86.38 0.51 4.98 16 11 C 0.11 3.03 3.09 30.60 0.09 3.13 16 12 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 13 O -0.56 -16.47 13.03 -148.98 -1.94 -18.41 16 14 C 0.10 2.33 5.31 86.38 0.46 2.79 16 15 N -0.71 -12.62 5.50 -463.07 -2.55 -15.17 16 16 C 0.50 9.23 7.47 87.66 0.66 9.89 16 17 O -0.59 -15.91 14.55 -3.04 -0.04 -15.96 16 18 C -0.15 -1.26 5.35 29.85 0.16 -1.10 16 19 C 0.15 1.66 2.64 45.05 0.12 1.78 16 20 H 0.07 1.00 7.92 -2.39 -0.02 0.98 16 21 C -0.13 -0.49 5.29 30.62 0.16 -0.33 16 22 C -0.12 -0.63 6.04 30.73 0.19 -0.44 16 23 C -0.13 -1.48 6.03 29.71 0.18 -1.30 16 24 C 0.51 11.04 7.71 87.71 0.68 11.72 16 25 O -0.62 -20.53 17.78 -3.06 -0.05 -20.59 16 26 N -0.71 -13.60 5.01 -446.93 -2.24 -15.84 16 27 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 28 H 0.38 20.32 7.54 -92.71 -0.70 19.62 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.38 9.51 9.04 -74.06 -0.67 8.84 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.42 5.72 8.47 -92.71 -0.79 4.94 16 35 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.12 -0.11 8.14 -2.38 -0.02 -0.13 16 38 H 0.09 0.20 8.10 -2.39 -0.02 0.18 16 39 H 0.07 0.46 8.13 -2.38 -0.02 0.44 16 40 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.39 9.63 6.94 -92.71 -0.64 8.98 16 Total: -1.00 -81.41 357.51 -3.64 -85.04 By element: Atomic # 1 Polarization: 38.03 SS G_CDS: -1.74 Total: 36.29 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 4.51 Total: 14.23 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -6.39 Total: -128.62 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -2.04 Total: -54.96 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -81.41 -3.64 -85.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667852763.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.168 kcal (2) G-P(sol) polarization free energy of solvation -81.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds