Wall clock time and date at job start Tue Mar 31 2020 04:56:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86798 * 119.99677 * 2 1
4 4 H 1.48502 * 109.46948 * 240.00162 * 3 2 1
5 5 H 1.48499 * 109.47282 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47487 * 120.00035 * 3 2 1
7 7 C 1.38811 * 120.00011 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99524 * 180.02562 * 7 2 1
9 9 N 1.36937 * 120.00183 * 0.02562 * 7 2 1
10 10 C 1.46502 * 119.99613 * 180.02562 * 9 7 2
11 11 C 1.53000 * 109.46749 * 180.02562 * 10 9 7
12 12 H 1.09005 * 109.46653 * 304.99339 * 11 10 9
13 13 O 1.42895 * 109.47551 * 64.99550 * 11 10 9
14 14 C 1.52997 * 109.47273 * 184.99928 * 11 10 9
15 15 N 1.46499 * 109.47555 * 179.97438 * 14 11 10
16 16 C 1.34777 * 120.00199 * 180.02562 * 15 14 11
17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 14
18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 14
19 19 C 1.52996 * 109.47159 * 179.72352 * 18 16 15
20 20 H 1.09005 * 109.29516 * 305.41695 * 19 18 16
21 21 C 1.52913 * 109.30005 * 186.03400 * 19 18 16
22 22 C 1.53351 * 108.67337 * 188.92998 * 21 19 18
23 23 C 1.53078 * 108.42075 * 67.53273 * 22 21 19
24 24 C 1.50173 * 109.89087 * 311.09815 * 23 22 21
25 25 O 1.21279 * 118.24404 * 197.60530 * 24 23 22
26 26 N 1.33351 * 123.50958 * 17.58591 * 24 23 22
27 27 H 0.96998 * 120.00064 * 0.02562 * 1 2 3
28 28 H 0.96994 * 120.00068 * 359.97438 * 9 7 2
29 29 H 1.08994 * 109.47393 * 59.99438 * 10 9 7
30 30 H 1.08999 * 109.46899 * 299.99698 * 10 9 7
31 31 H 0.96704 * 113.99918 * 59.99867 * 13 11 10
32 32 H 1.08998 * 109.47382 * 59.99521 * 14 11 10
33 33 H 1.09002 * 109.47216 * 299.99958 * 14 11 10
34 34 H 0.97000 * 119.99484 * 359.97438 * 15 14 11
35 35 H 1.09004 * 109.46965 * 299.72211 * 18 16 15
36 36 H 1.08994 * 109.46990 * 59.72065 * 18 16 15
37 37 H 1.08999 * 109.60595 * 308.68915 * 21 19 18
38 38 H 1.08999 * 109.60483 * 69.18396 * 21 19 18
39 39 H 1.08997 * 109.67804 * 307.80435 * 22 21 19
40 40 H 1.09000 * 109.70219 * 187.28008 * 22 21 19
41 41 H 1.09000 * 109.39852 * 190.96993 * 23 22 21
42 42 H 1.08999 * 109.40011 * 71.23065 * 23 22 21
43 43 H 0.96999 * 117.94585 * 177.75848 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1039 1.6965 -1.2125
5 1 1.2851 2.7464 -0.0006
6 1 3.1039 1.6966 1.2124
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2020 0.0010
9 7 1.3257 -2.3881 0.0005
10 6 2.0583 -3.6567 0.0017
11 6 1.0641 -4.8197 0.0008
12 1 0.3791 -4.7126 0.8419
13 8 0.3231 -4.8121 -1.2210
14 6 1.8248 -6.1411 0.1277
15 7 0.8729 -7.2546 0.1274
16 6 1.3186 -8.5224 0.2306
17 8 2.5080 -8.7413 0.3231
18 6 0.3398 -9.6682 0.2241
19 6 1.1008 -10.9898 0.3460
20 1 1.8528 -11.0464 -0.4411
21 6 0.1214 -12.1534 0.1882
22 6 0.8494 -13.4583 0.5332
23 6 1.1764 -13.4489 2.0286
24 6 1.8209 -12.1451 2.4025
25 8 2.4314 -12.0858 3.4488
26 7 1.7583 -11.0490 1.6455
27 1 -0.4850 0.8400 -0.0004
28 1 0.3557 -2.3881 0.0005
29 1 2.6843 -3.7140 0.8921
30 1 2.6856 -3.7148 -0.8878
31 1 0.8700 -4.9036 -2.0133
32 1 2.3900 -6.1470 1.0596
33 1 2.5099 -6.2482 -0.7134
34 1 -0.0783 -7.0794 0.0538
35 1 -0.3460 -9.5649 1.0650
36 1 -0.2246 -9.6586 -0.7083
37 1 -0.7223 -12.0156 0.8643
38 1 -0.2347 -12.1947 -0.8412
39 1 1.7717 -13.5275 -0.0436
40 1 0.2079 -14.3089 0.3031
41 1 1.8587 -14.2682 2.2552
42 1 0.2575 -13.5759 2.6009
43 1 2.1763 -10.2405 1.9808
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001667852764.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:56:51
Heat of formation + Delta-G solvation = -130.076100 kcal
Electronic energy + Delta-G solvation = -23861.024888 eV
Core-core repulsion = 20133.609052 eV
Total energy + Delta-G solvation = -3727.415836 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 299.168 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.88586 -39.69071 -37.81123 -36.91869 -34.51316 -34.06521 -33.56503 -31.80772
-31.29204 -29.41243 -27.92054 -25.43395 -23.84006 -22.88440 -22.36734 -21.51224
-20.43167 -19.50987 -17.66085 -17.45976 -17.17829 -16.63406 -16.45364 -16.04089
-15.72982 -15.29583 -15.01359 -14.50262 -14.49208 -14.27560 -14.09251 -13.78240
-13.51494 -13.38169 -13.01824 -12.94493 -12.49608 -12.25135 -12.01360 -11.89997
-11.70962 -11.49559 -11.46213 -11.00112 -10.82888 -10.69720 -10.26191 -10.20466
-9.97731 -9.84471 -9.55584 -9.32434 -9.23083 -8.93641 -6.98288 -5.79677
-3.09682 2.38164 2.42888 2.93196 3.04403 3.42131 3.46431 3.47559
4.04014 4.14671 4.20545 4.35874 4.50334 4.56387 4.63379 4.70811
4.76047 4.82464 4.98464 5.04715 5.11021 5.16450 5.28339 5.39307
5.41618 5.46604 5.51753 5.55785 5.70771 5.72751 5.88009 6.13134
6.25889 6.45959 6.60567 6.61134 7.15607 7.30228 7.64663 7.84439
7.97809 8.03885 8.38381 9.50002 10.05817 10.41447 11.42555
Molecular weight = 299.17amu
Principal moments of inertia in cm(-1)
A = 0.039816 B = 0.002159 C = 0.002099
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 703.064960 B =12967.655166 C =13337.333686
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C -0.012 4.012
3 Si 0.909 3.091
4 H -0.286 1.286
5 H -0.290 1.290
6 H -0.285 1.285
7 C -0.245 4.245
8 H 0.070 0.930
9 N -0.726 5.726
10 C 0.127 3.873
11 C 0.089 3.911
12 H 0.105 0.895
13 O -0.553 6.553
14 C 0.088 3.912
15 N -0.718 5.718
16 C 0.507 3.493
17 O -0.543 6.543
18 C -0.157 4.157
19 C 0.157 3.843
20 H 0.085 0.915
21 C -0.134 4.134
22 C -0.124 4.124
23 C -0.136 4.136
24 C 0.516 3.484
25 O -0.562 6.562
26 N -0.708 5.708
27 H 0.256 0.744
28 H 0.388 0.612
29 H 0.029 0.971
30 H 0.023 0.977
31 H 0.373 0.627
32 H 0.078 0.922
33 H 0.072 0.928
34 H 0.406 0.594
35 H 0.102 0.898
36 H 0.112 0.888
37 H 0.076 0.924
38 H 0.087 0.913
39 H 0.072 0.928
40 H 0.079 0.921
41 H 0.099 0.901
42 H 0.099 0.901
43 H 0.406 0.594
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.297 -27.875 -2.430 28.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.208 4.208
3 Si 0.740 3.260
4 H -0.212 1.212
5 H -0.216 1.216
6 H -0.212 1.212
7 C -0.376 4.376
8 H 0.088 0.912
9 N -0.371 5.371
10 C -0.002 4.002
11 C 0.029 3.971
12 H 0.123 0.877
13 O -0.358 6.358
14 C -0.036 4.036
15 N -0.369 5.369
16 C 0.293 3.707
17 O -0.421 6.421
18 C -0.198 4.198
19 C 0.051 3.949
20 H 0.103 0.897
21 C -0.172 4.172
22 C -0.161 4.161
23 C -0.176 4.176
24 C 0.303 3.697
25 O -0.441 6.441
26 N -0.362 5.362
27 H 0.066 0.934
28 H 0.223 0.777
29 H 0.046 0.954
30 H 0.041 0.959
31 H 0.220 0.780
32 H 0.097 0.903
33 H 0.090 0.910
34 H 0.241 0.759
35 H 0.120 0.880
36 H 0.130 0.870
37 H 0.095 0.905
38 H 0.106 0.894
39 H 0.091 0.909
40 H 0.098 0.902
41 H 0.118 0.882
42 H 0.117 0.883
43 H 0.244 0.756
Dipole moment (debyes) X Y Z Total
from point charges -2.608 -27.981 -1.499 28.142
hybrid contribution 0.324 1.456 -0.361 1.534
sum -2.283 -26.525 -1.860 26.688
Atomic orbital electron populations
1.69666 1.05117 1.25854 1.57209 1.24770 0.95554 0.97773 1.02746
0.86241 0.78506 0.83372 0.77880 1.21226 1.21628 1.21204 1.19171
0.90983 0.84092 1.43396 0.91243 1.42225 1.06043 0.99393 1.89404
1.21199 0.93500 0.86588 0.98887 1.22400 0.94622 0.91850 0.88221
0.87720 1.86575 1.37538 1.96248 1.15412 1.22127 0.92254 0.85979
1.03280 1.45950 1.11355 1.05639 1.73995 1.20625 0.89661 0.84146
0.76260 1.90734 1.16985 1.84677 1.49723 1.22156 0.98879 0.92919
1.05837 1.20707 0.94572 0.93342 0.86312 0.89741 1.21977 0.98056
0.93637 1.03514 1.21658 1.01441 0.97925 0.95108 1.21661 1.02735
0.95482 0.97723 1.20199 0.80084 0.85889 0.83551 1.90771 1.43410
1.85093 1.24842 1.45676 1.56805 1.13843 1.19836 0.93391 0.77735
0.95366 0.95920 0.77982 0.90349 0.90968 0.75856 0.87972 0.86998
0.90543 0.89395 0.90905 0.90248 0.88237 0.88280 0.75626
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16
2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16
3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16
4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
7 C -0.25 -6.85 9.99 -15.06 -0.15 -7.00 16
8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16
9 N -0.73 -18.12 5.55 -59.91 -0.33 -18.45 16
10 C 0.13 2.39 5.90 -4.04 -0.02 2.37 16
11 C 0.09 1.28 3.09 -26.73 -0.08 1.20 16
12 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16
13 O -0.55 -8.08 13.03 -35.23 -0.46 -8.54 16
14 C 0.09 1.05 5.34 -4.04 -0.02 1.03 16
15 N -0.72 -6.98 5.45 -60.29 -0.33 -7.31 16
16 C 0.51 5.02 7.47 -10.98 -0.08 4.94 16
17 O -0.54 -7.43 14.56 5.55 0.08 -7.34 16
18 C -0.16 -0.91 5.34 -27.88 -0.15 -1.06 16
19 C 0.16 1.03 2.64 -68.38 -0.18 0.85 16
20 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16
21 C -0.13 -0.51 5.30 -26.59 -0.14 -0.65 16
22 C -0.12 -0.51 6.03 -26.51 -0.16 -0.67 16
23 C -0.14 -0.88 6.03 -28.10 -0.17 -1.05 16
24 C 0.52 5.60 7.71 -11.87 -0.09 5.51 16
25 O -0.56 -8.82 17.78 5.56 0.10 -8.72 16
26 N -0.71 -6.90 5.01 -54.86 -0.27 -7.17 16
27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
28 H 0.39 10.35 7.67 -40.82 -0.31 10.04 16
29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
31 H 0.37 4.48 9.05 45.56 0.41 4.89 16
32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
34 H 0.41 3.31 8.35 -40.82 -0.34 2.97 16
35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16
36 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16
37 H 0.08 0.26 8.11 -51.93 -0.42 -0.16 16
38 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16
39 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16
40 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16
41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16
42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16
43 H 0.41 4.84 6.94 -40.82 -0.28 4.56 16
LS Contribution 357.53 15.07 5.39 5.39
Total: -1.00 -36.35 357.53 -7.45 -43.80
By element:
Atomic # 1 Polarization: 19.40 SS G_CDS: -5.98 Total: 13.43 kcal
Atomic # 6 Polarization: 6.38 SS G_CDS: -1.35 Total: 5.03 kcal
Atomic # 7 Polarization: -60.15 SS G_CDS: -0.21 Total: -60.36 kcal
Atomic # 8 Polarization: -24.33 SS G_CDS: -0.28 Total: -24.61 kcal
Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -36.35 -7.45 -43.80 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001667852764.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -86.275 kcal
(2) G-P(sol) polarization free energy of solvation -36.351 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.626 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal
(6) G-S(sol) free energy of system = (1) + (5) -130.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds