Wall clock time and date at job start Tue Mar 31 2020 04:56:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86798 * 119.99677 * 2 1
4 4 H 1.48502 * 109.46948 * 240.00162 * 3 2 1
5 5 H 1.48499 * 109.47282 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47487 * 120.00035 * 3 2 1
7 7 C 1.38811 * 120.00011 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99524 * 180.02562 * 7 2 1
9 9 N 1.36937 * 120.00183 * 0.02562 * 7 2 1
10 10 C 1.46502 * 119.99613 * 180.02562 * 9 7 2
11 11 C 1.53000 * 109.46749 * 180.02562 * 10 9 7
12 12 H 1.09005 * 109.46653 * 304.99339 * 11 10 9
13 13 O 1.42895 * 109.47551 * 64.99550 * 11 10 9
14 14 C 1.52997 * 109.47273 * 184.99928 * 11 10 9
15 15 N 1.46499 * 109.47555 * 179.97438 * 14 11 10
16 16 C 1.34777 * 120.00199 * 180.02562 * 15 14 11
17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 14
18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 14
19 19 C 1.52996 * 109.47159 * 179.72352 * 18 16 15
20 20 H 1.09005 * 109.29516 * 305.41695 * 19 18 16
21 21 C 1.52913 * 109.30005 * 186.03400 * 19 18 16
22 22 C 1.53351 * 108.67337 * 188.92998 * 21 19 18
23 23 C 1.53078 * 108.42075 * 67.53273 * 22 21 19
24 24 C 1.50173 * 109.89087 * 311.09815 * 23 22 21
25 25 O 1.21279 * 118.24404 * 197.60530 * 24 23 22
26 26 N 1.33351 * 123.50958 * 17.58591 * 24 23 22
27 27 H 0.96998 * 120.00064 * 0.02562 * 1 2 3
28 28 H 0.96994 * 120.00068 * 359.97438 * 9 7 2
29 29 H 1.08994 * 109.47393 * 59.99438 * 10 9 7
30 30 H 1.08999 * 109.46899 * 299.99698 * 10 9 7
31 31 H 0.96704 * 113.99918 * 59.99867 * 13 11 10
32 32 H 1.08998 * 109.47382 * 59.99521 * 14 11 10
33 33 H 1.09002 * 109.47216 * 299.99958 * 14 11 10
34 34 H 0.97000 * 119.99484 * 359.97438 * 15 14 11
35 35 H 1.09004 * 109.46965 * 299.72211 * 18 16 15
36 36 H 1.08994 * 109.46990 * 59.72065 * 18 16 15
37 37 H 1.08999 * 109.60595 * 308.68915 * 21 19 18
38 38 H 1.08999 * 109.60483 * 69.18396 * 21 19 18
39 39 H 1.08997 * 109.67804 * 307.80435 * 22 21 19
40 40 H 1.09000 * 109.70219 * 187.28008 * 22 21 19
41 41 H 1.09000 * 109.39852 * 190.96993 * 23 22 21
42 42 H 1.08999 * 109.40011 * 71.23065 * 23 22 21
43 43 H 0.96999 * 117.94585 * 177.75848 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1039 1.6965 -1.2125
5 1 1.2851 2.7464 -0.0006
6 1 3.1039 1.6966 1.2124
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2020 0.0010
9 7 1.3257 -2.3881 0.0005
10 6 2.0583 -3.6567 0.0017
11 6 1.0641 -4.8197 0.0008
12 1 0.3791 -4.7126 0.8419
13 8 0.3231 -4.8121 -1.2210
14 6 1.8248 -6.1411 0.1277
15 7 0.8729 -7.2546 0.1274
16 6 1.3186 -8.5224 0.2306
17 8 2.5080 -8.7413 0.3231
18 6 0.3398 -9.6682 0.2241
19 6 1.1008 -10.9898 0.3460
20 1 1.8528 -11.0464 -0.4411
21 6 0.1214 -12.1534 0.1882
22 6 0.8494 -13.4583 0.5332
23 6 1.1764 -13.4489 2.0286
24 6 1.8209 -12.1451 2.4025
25 8 2.4314 -12.0858 3.4488
26 7 1.7583 -11.0490 1.6455
27 1 -0.4850 0.8400 -0.0004
28 1 0.3557 -2.3881 0.0005
29 1 2.6843 -3.7140 0.8921
30 1 2.6856 -3.7148 -0.8878
31 1 0.8700 -4.9036 -2.0133
32 1 2.3900 -6.1470 1.0596
33 1 2.5099 -6.2482 -0.7134
34 1 -0.0783 -7.0794 0.0538
35 1 -0.3460 -9.5649 1.0650
36 1 -0.2246 -9.6586 -0.7083
37 1 -0.7223 -12.0156 0.8643
38 1 -0.2347 -12.1947 -0.8412
39 1 1.7717 -13.5275 -0.0436
40 1 0.2079 -14.3089 0.3031
41 1 1.8587 -14.2682 2.2552
42 1 0.2575 -13.5759 2.6009
43 1 2.1763 -10.2405 1.9808
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001667852764.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:56:50
Heat of formation + Delta-G solvation = -162.170937 kcal
Electronic energy + Delta-G solvation = -23862.416624 eV
Core-core repulsion = 20133.609052 eV
Total energy + Delta-G solvation = -3728.807572 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 299.168 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.60472 -40.56181 -39.00119 -37.68440 -36.09877 -35.28305 -34.07558 -33.23606
-32.43547 -30.66953 -28.68858 -26.88892 -24.80827 -23.96352 -23.26876 -22.77388
-21.29844 -20.02877 -19.26668 -18.36461 -18.25706 -17.55938 -17.35577 -17.08779
-16.64262 -16.41770 -16.13172 -15.90919 -15.49060 -15.18220 -14.97875 -14.83266
-14.48290 -14.25445 -14.17407 -13.96448 -13.84518 -13.33856 -12.99358 -12.87285
-12.73268 -12.55242 -12.21877 -12.21851 -11.99273 -11.88050 -11.82553 -11.78878
-11.18506 -10.99113 -10.89722 -10.67949 -10.14620 -10.07735 -9.03327 -7.96712
-5.26375 1.46674 1.49582 1.55817 1.61066 1.62827 2.12948 2.35793
2.55072 3.34204 3.45666 3.54881 3.59003 3.68613 3.71862 3.96462
3.99808 4.07681 4.20118 4.24407 4.31755 4.40953 4.58987 4.61179
4.67082 4.73098 4.75904 4.91601 4.92481 5.01159 5.12508 5.14242
5.19631 5.35785 5.40354 5.46220 5.76915 6.24502 6.42912 6.53941
6.78941 7.18558 7.24433 7.31630 8.06557 8.29786 9.26152
Molecular weight = 299.17amu
Principal moments of inertia in cm(-1)
A = 0.039816 B = 0.002159 C = 0.002099
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 703.064960 B =12967.655166 C =13337.333686
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.967 5.967
2 C -0.075 4.075
3 Si 0.975 3.025
4 H -0.277 1.277
5 H -0.294 1.294
6 H -0.278 1.278
7 C -0.251 4.251
8 H 0.075 0.925
9 N -0.740 5.740
10 C 0.121 3.879
11 C 0.110 3.890
12 H 0.099 0.901
13 O -0.561 6.561
14 C 0.101 3.899
15 N -0.711 5.711
16 C 0.503 3.497
17 O -0.585 6.585
18 C -0.146 4.146
19 C 0.150 3.850
20 H 0.074 0.926
21 C -0.127 4.127
22 C -0.119 4.119
23 C -0.131 4.131
24 C 0.506 3.494
25 O -0.624 6.624
26 N -0.708 5.708
27 H 0.252 0.748
28 H 0.377 0.623
29 H 0.030 0.970
30 H 0.031 0.969
31 H 0.385 0.615
32 H 0.069 0.931
33 H 0.072 0.928
34 H 0.417 0.583
35 H 0.118 0.882
36 H 0.149 0.851
37 H 0.087 0.913
38 H 0.116 0.884
39 H 0.066 0.934
40 H 0.106 0.894
41 H 0.099 0.901
42 H 0.116 0.884
43 H 0.391 0.609
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.319 -29.360 -3.702 29.906
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.617 5.617
2 C -0.268 4.268
3 Si 0.804 3.196
4 H -0.203 1.203
5 H -0.221 1.221
6 H -0.204 1.204
7 C -0.383 4.383
8 H 0.093 0.907
9 N -0.383 5.383
10 C -0.006 4.006
11 C 0.050 3.950
12 H 0.117 0.883
13 O -0.367 6.367
14 C -0.024 4.024
15 N -0.363 5.363
16 C 0.291 3.709
17 O -0.466 6.466
18 C -0.186 4.186
19 C 0.045 3.955
20 H 0.092 0.908
21 C -0.165 4.165
22 C -0.157 4.157
23 C -0.170 4.170
24 C 0.296 3.704
25 O -0.508 6.508
26 N -0.358 5.358
27 H 0.061 0.939
28 H 0.209 0.791
29 H 0.048 0.952
30 H 0.048 0.952
31 H 0.234 0.766
32 H 0.087 0.913
33 H 0.091 0.909
34 H 0.254 0.746
35 H 0.136 0.864
36 H 0.166 0.834
37 H 0.106 0.894
38 H 0.134 0.866
39 H 0.085 0.915
40 H 0.125 0.875
41 H 0.117 0.883
42 H 0.134 0.866
43 H 0.226 0.774
Dipole moment (debyes) X Y Z Total
from point charges -3.639 -29.503 -2.826 29.861
hybrid contribution 0.698 1.875 0.004 2.001
sum -2.941 -27.628 -2.823 27.927
Atomic orbital electron populations
1.69821 1.06596 1.26232 1.59070 1.25606 0.96445 1.01213 1.03497
0.85192 0.77191 0.79034 0.78202 1.20307 1.22059 1.20439 1.19598
0.91488 0.85399 1.41795 0.90694 1.42408 1.05734 1.00750 1.89397
1.21422 0.94341 0.85911 0.98960 1.22055 0.93418 0.91335 0.88231
0.88290 1.86553 1.38036 1.96216 1.15914 1.21788 0.92204 0.85545
1.02858 1.45859 1.11486 1.05164 1.73804 1.21398 0.89827 0.84777
0.74879 1.90726 1.19127 1.85217 1.51537 1.22205 0.97859 0.90208
1.08344 1.20980 0.95054 0.95265 0.84182 0.90788 1.22019 0.97255
0.91697 1.05528 1.21683 1.01840 0.99295 0.92864 1.21705 1.02914
0.92509 0.99897 1.21081 0.79337 0.87357 0.82674 1.90731 1.46308
1.86174 1.27572 1.45890 1.56193 1.12950 1.20758 0.93923 0.79082
0.95220 0.95161 0.76580 0.91253 0.90931 0.74625 0.86360 0.83376
0.89398 0.86609 0.91542 0.87529 0.88251 0.86576 0.77425
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -59.19 13.06 21.65 0.28 -58.91 16
2 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16
3 Si 0.98 46.02 29.55 68.60 2.03 48.05 16
4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16
6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
7 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16
8 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16
9 N -0.74 -37.01 5.55 -343.46 -1.91 -38.92 16
10 C 0.12 4.51 5.90 86.38 0.51 5.02 16
11 C 0.11 3.07 3.09 30.59 0.09 3.16 16
12 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16
13 O -0.56 -15.63 13.03 -148.98 -1.94 -17.57 16
14 C 0.10 2.33 5.34 86.38 0.46 2.80 16
15 N -0.71 -12.66 5.45 -463.06 -2.52 -15.18 16
16 C 0.50 9.24 7.47 87.66 0.66 9.90 16
17 O -0.59 -15.92 14.56 -3.04 -0.04 -15.97 16
18 C -0.15 -1.26 5.34 29.85 0.16 -1.10 16
19 C 0.15 1.66 2.64 45.10 0.12 1.77 16
20 H 0.07 1.00 7.93 -2.38 -0.02 0.98 16
21 C -0.13 -0.49 5.30 30.68 0.16 -0.32 16
22 C -0.12 -0.63 6.03 30.74 0.19 -0.44 16
23 C -0.13 -1.48 6.03 29.71 0.18 -1.31 16
24 C 0.51 11.10 7.71 87.71 0.68 11.77 16
25 O -0.62 -20.64 17.78 -3.03 -0.05 -20.70 16
26 N -0.71 -13.67 5.01 -446.66 -2.24 -15.91 16
27 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16
28 H 0.38 20.32 7.67 -92.71 -0.71 19.61 16
29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16
30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16
31 H 0.39 8.63 9.05 -74.05 -0.67 7.96 16
32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16
34 H 0.42 5.81 8.35 -92.71 -0.77 5.04 16
35 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16
36 H 0.15 0.28 8.14 -2.39 -0.02 0.26 16
37 H 0.09 0.20 8.11 -2.39 -0.02 0.19 16
38 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16
39 H 0.07 0.46 8.13 -2.39 -0.02 0.44 16
40 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16
41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16
42 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16
43 H 0.39 9.68 6.94 -92.71 -0.64 9.04 16
Total: -1.00 -81.49 357.53 -3.63 -85.12
By element:
Atomic # 1 Polarization: 37.48 SS G_CDS: -1.74 Total: 35.74 kcal
Atomic # 6 Polarization: 9.74 SS G_CDS: 4.51 Total: 14.25 kcal
Atomic # 7 Polarization: -122.53 SS G_CDS: -6.38 Total: -128.92 kcal
Atomic # 8 Polarization: -52.19 SS G_CDS: -2.04 Total: -54.23 kcal
Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal
Total: -81.49 -3.63 -85.12 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001667852764.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.055 kcal
(2) G-P(sol) polarization free energy of solvation -81.487 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.543 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.628 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.115 kcal
(6) G-S(sol) free energy of system = (1) + (5) -162.171 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds