Wall clock time and date at job start Tue Mar 31 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34631 * 117.00393 * 2 1 4 4 O 1.21513 * 119.99893 * 359.97438 * 3 2 1 5 5 N 1.34772 * 120.00511 * 179.97438 * 3 2 1 6 6 C 1.46495 * 120.00302 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.47337 * 179.97438 * 6 5 3 8 8 O 1.21286 * 119.99739 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00142 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99789 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46087 * 324.97318 * 10 9 7 12 12 C 1.53043 * 109.44633 * 84.94421 * 10 9 7 13 13 C 1.52765 * 109.38080 * 181.25187 * 12 10 9 14 14 N 1.46922 * 109.00869 * 305.58495 * 13 12 10 15 15 C 1.36940 * 120.63034 * 233.58321 * 14 13 12 16 16 H 1.07998 * 119.99798 * 149.97586 * 15 14 13 17 17 C 1.38810 * 119.99822 * 330.25114 * 15 14 13 18 18 N 1.31613 * 119.99993 * 344.24279 * 17 15 14 19 19 Si 1.86797 * 119.99729 * 164.23873 * 17 15 14 20 20 H 1.48498 * 109.47286 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47054 * 120.00186 * 19 17 15 22 22 H 1.48509 * 109.47234 * 239.99943 * 19 17 15 23 23 C 1.46923 * 118.73869 * 53.31150 * 14 13 12 24 24 H 1.08999 * 109.59296 * 66.57034 * 23 14 13 25 25 C 1.53004 * 109.58930 * 186.85785 * 23 14 13 26 26 C 1.53045 * 109.45765 * 204.99757 * 10 9 7 27 27 H 1.09004 * 109.47331 * 299.99936 * 1 2 3 28 28 H 1.09007 * 109.47238 * 60.00291 * 1 2 3 29 29 H 1.09002 * 109.47494 * 180.02562 * 1 2 3 30 30 H 0.96999 * 119.99747 * 0.02562 * 5 3 2 31 31 H 1.09004 * 109.47039 * 60.00680 * 6 5 3 32 32 H 1.08999 * 109.47556 * 300.00562 * 6 5 3 33 33 H 0.96997 * 120.00711 * 0.02562 * 9 7 6 34 34 H 1.09006 * 109.49539 * 301.32259 * 12 10 9 35 35 H 1.08995 * 109.49951 * 61.42657 * 12 10 9 36 36 H 1.09003 * 109.50587 * 185.70073 * 13 12 10 37 37 H 1.08998 * 109.42865 * 65.41864 * 13 12 10 38 38 H 0.97006 * 120.00035 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.46923 * 59.99638 * 25 23 14 40 40 H 1.08992 * 109.47317 * 179.97438 * 25 23 14 41 41 H 1.09001 * 109.46661 * 299.99948 * 25 23 14 42 42 H 1.09002 * 109.49492 * 58.68446 * 26 10 9 43 43 H 1.08993 * 109.52474 * 298.60041 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1995 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.0742 2.5754 0.0000 7 6 5.5683 2.3779 0.0013 8 8 6.0318 1.2571 0.0022 9 7 6.3893 3.4467 0.0016 10 6 7.8417 3.2547 0.0024 11 1 8.0911 2.3728 0.5925 12 6 8.3309 3.0616 -1.4348 13 6 9.8409 2.8304 -1.4296 14 7 10.4918 3.9361 -0.7137 15 6 11.5020 4.6494 -1.3019 16 1 11.6497 5.6881 -1.0457 17 6 12.3326 4.0389 -2.2316 18 7 12.3630 2.7264 -2.3251 19 14 13.4069 5.0802 -3.3500 20 1 13.1887 6.5176 -3.0480 21 1 14.8341 4.7375 -3.1247 22 1 13.0514 4.8131 -4.7669 23 6 10.0342 4.2658 0.6430 24 1 10.2735 3.4450 1.3190 25 6 10.7270 5.5432 1.1218 26 6 8.5182 4.4845 0.6124 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 3.9374 0.4566 0.0005 31 1 3.7811 3.1329 0.8895 32 1 3.7817 3.1319 -0.8904 33 1 6.0187 4.3431 0.0013 34 1 7.8312 2.1993 -1.8764 35 1 8.1039 3.9531 -2.0193 36 1 10.2071 2.7936 -2.4556 37 1 10.0619 1.8891 -0.9265 38 1 12.9431 2.2998 -2.9750 39 1 10.4823 6.3638 0.4474 40 1 10.3859 5.7863 2.1280 41 1 11.8061 5.3897 1.1307 42 1 8.1518 4.6350 1.6279 43 1 8.2894 5.3629 0.0091 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674120485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:34 Heat of formation + Delta-G solvation = -97.109334 kcal Electronic energy + Delta-G solvation = -24563.263948 eV Core-core repulsion = 20837.277658 eV Total energy + Delta-G solvation = -3725.986289 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.78136 -39.85037 -37.86604 -36.84088 -34.98546 -34.55690 -32.47984 -31.53217 -29.89080 -28.68472 -27.06018 -26.32584 -24.70851 -22.25863 -21.71089 -21.09681 -20.23227 -19.60587 -19.00860 -17.26713 -16.91104 -16.80633 -16.24705 -16.06587 -15.53189 -15.19525 -14.63975 -14.30119 -14.05746 -13.88114 -13.72549 -13.41234 -13.23962 -13.05601 -12.81055 -12.51979 -12.34859 -11.63843 -11.26855 -11.17642 -11.06301 -10.97357 -10.96418 -10.90626 -10.69464 -10.34408 -10.21757 -10.09182 -10.00479 -9.78740 -9.58879 -9.42826 -8.83583 -8.46022 -6.66521 -5.79593 -3.23853 1.81316 2.47104 2.57225 3.16957 3.35851 3.43878 3.45320 4.02116 4.47140 4.54728 4.84374 4.91552 5.00399 5.02804 5.18811 5.21218 5.32818 5.39587 5.51996 5.71655 5.80679 5.93074 6.06093 6.11103 6.17174 6.28163 6.33676 6.38006 6.45589 6.58700 6.73848 6.79386 6.99616 7.06697 7.11436 7.33712 7.48707 7.65351 7.81179 8.03409 8.13611 8.44820 9.20063 9.83665 10.40628 11.29251 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.031444 B = 0.002704 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.249276 B =10352.410918 C =10793.292157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.651 3.349 4 O -0.576 6.576 5 N -0.696 5.696 6 C 0.117 3.883 7 C 0.506 3.494 8 O -0.535 6.535 9 N -0.716 5.716 10 C 0.150 3.850 11 H 0.084 0.916 12 C -0.147 4.147 13 C 0.175 3.825 14 N -0.587 5.587 15 C -0.251 4.251 16 H 0.070 0.930 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.171 3.829 24 H 0.027 0.973 25 C -0.136 4.136 26 C -0.134 4.134 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.420 0.580 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.399 0.601 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.020 0.980 38 H 0.253 0.747 39 H 0.053 0.947 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.056 -0.615 5.780 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.283 6.283 3 C 0.403 3.597 4 O -0.465 6.465 5 N -0.359 5.359 6 C -0.009 4.009 7 C 0.290 3.710 8 O -0.412 6.412 9 N -0.366 5.366 10 C 0.047 3.953 11 H 0.102 0.898 12 C -0.187 4.187 13 C 0.049 3.951 14 N -0.311 5.311 15 C -0.381 4.381 16 H 0.088 0.912 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.064 3.936 24 H 0.045 0.955 25 C -0.193 4.193 26 C -0.174 4.174 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.259 0.741 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.233 0.767 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.968 -1.052 5.678 19.828 hybrid contribution 0.433 0.579 -0.699 1.006 sum -18.536 -0.473 4.979 19.199 Atomic orbital electron populations 1.23218 0.74193 1.03577 1.02779 1.86258 1.24302 1.30776 1.86992 1.17966 0.83086 0.82281 0.76354 1.91006 1.64720 1.34825 1.55970 1.44213 1.03234 1.10583 1.77830 1.21056 0.89889 0.84775 1.05209 1.20306 0.88218 0.85607 0.76868 1.90736 1.77148 1.23616 1.49697 1.46226 1.07893 1.08442 1.74041 1.21126 0.76281 0.99427 0.98428 0.89838 1.22510 1.00939 1.00719 0.94552 1.20642 0.85751 0.89431 0.99319 1.44156 1.38965 1.37688 1.10277 1.19187 1.06256 0.92757 1.19902 0.91213 1.25110 0.97583 0.95267 1.01640 1.70033 1.40517 1.07416 1.36572 0.86268 0.80127 0.79838 0.80792 1.20273 1.21753 1.21635 1.20360 0.89620 0.95365 0.88302 0.95508 1.21795 1.01572 0.97626 0.98321 1.22392 0.98917 0.96829 0.99284 0.91792 0.91761 0.87869 0.74134 0.88062 0.87993 0.76727 0.92819 0.92566 0.89367 0.96156 0.93681 0.92780 0.94289 0.91799 0.92572 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -3.90 10.61 -40.30 -0.43 -4.33 16 3 C 0.65 7.89 8.75 54.05 0.47 8.36 16 4 O -0.58 -8.20 16.13 -19.28 -0.31 -8.51 16 5 N -0.70 -7.79 5.53 -66.47 -0.37 -8.16 16 6 C 0.12 1.17 6.15 -5.20 -0.03 1.14 16 7 C 0.51 6.45 7.86 -10.99 -0.09 6.36 16 8 O -0.53 -8.86 15.33 5.55 0.09 -8.78 16 9 N -0.72 -8.75 5.08 -53.76 -0.27 -9.02 16 10 C 0.15 2.41 2.42 -67.88 -0.16 2.25 16 11 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 12 C -0.15 -2.76 5.63 -26.83 -0.15 -2.91 16 13 C 0.17 4.09 5.26 -3.93 -0.02 4.07 16 14 N -0.59 -13.95 2.99 -165.03 -0.49 -14.44 16 15 C -0.25 -6.55 8.57 -15.06 -0.13 -6.67 16 16 H 0.07 1.77 6.24 -52.49 -0.33 1.44 16 17 C 0.00 0.08 4.93 -17.43 -0.09 -0.01 16 18 N -0.90 -25.80 11.24 55.49 0.62 -25.18 16 19 Si 0.90 21.26 29.58 -169.99 -5.03 16.23 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.17 3.34 3.50 -67.60 -0.24 3.10 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 C -0.14 -2.40 7.95 37.16 0.30 -2.11 16 26 C -0.13 -2.09 4.84 -26.61 -0.13 -2.22 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.42 4.76 7.55 -40.82 -0.31 4.45 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.40 3.63 8.60 -40.82 -0.35 3.28 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 2.33 6.15 -51.93 -0.32 2.01 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.05 0.96 7.44 -51.93 -0.39 0.57 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 1.24 7.63 -51.93 -0.40 0.84 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -32.45 351.43 -6.78 -39.24 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.69 Total: 4.82 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 0.80 Total: 12.83 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.51 Total: -56.80 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.65 Total: -21.61 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.45 -6.78 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674120485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.872 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds