Wall clock time and date at job start Tue Mar 31 2020 05:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46755 * 2 1 4 4 C 1.53004 * 109.46817 * 240.00623 * 2 1 3 5 5 C 1.52996 * 109.47468 * 120.00469 * 2 1 3 6 6 H 1.08992 * 109.47232 * 180.02562 * 5 2 1 7 7 C 1.53003 * 109.46700 * 299.99844 * 5 2 1 8 8 N 1.46503 * 109.46799 * 175.00140 * 7 5 2 9 9 C 1.36942 * 120.00100 * 180.02562 * 8 7 5 10 10 H 1.07993 * 119.99685 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00063 * 179.97438 * 9 8 7 12 12 N 1.31616 * 120.00145 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99773 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47421 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47112 * 120.00100 * 13 11 9 16 16 H 1.48500 * 109.47181 * 240.00121 * 13 11 9 17 17 N 1.46497 * 109.47231 * 59.99713 * 5 2 1 18 18 C 1.34773 * 119.99874 * 85.00061 * 17 5 2 19 19 O 1.21279 * 120.00221 * 0.02562 * 18 17 5 20 20 C 1.50707 * 120.00085 * 179.97438 * 18 17 5 21 21 H 1.08993 * 110.61953 * 317.18435 * 20 18 17 22 22 C 1.54091 * 110.56205 * 80.00158 * 20 18 17 23 23 O 1.45696 * 104.00964 * 118.57323 * 22 20 18 24 24 C 1.33774 * 109.47780 * 359.97438 * 23 22 20 25 25 O 1.21510 * 123.07649 * 179.72908 * 24 23 22 26 26 N 1.34010 * 113.85267 * 0.02562 * 24 23 22 27 27 H 1.09004 * 109.46517 * 299.99604 * 1 2 3 28 28 H 1.09000 * 109.47540 * 59.99363 * 1 2 3 29 29 H 1.08997 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46559 * 180.02562 * 3 2 1 31 31 H 1.08989 * 109.47059 * 300.00084 * 3 2 1 32 32 H 1.08997 * 109.46639 * 60.00872 * 3 2 1 33 33 H 1.08997 * 109.46920 * 299.99423 * 4 2 1 34 34 H 1.09000 * 109.47054 * 59.99717 * 4 2 1 35 35 H 1.09001 * 109.46716 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.47145 * 294.99677 * 7 5 2 37 37 H 1.09001 * 109.47527 * 55.00016 * 7 5 2 38 38 H 0.97000 * 120.00435 * 359.97438 * 8 7 5 39 39 H 0.96993 * 120.00237 * 180.02562 * 12 11 9 40 40 H 0.97004 * 120.00091 * 264.99974 * 17 5 2 41 41 H 1.09009 * 110.52231 * 359.94037 * 22 20 18 42 42 H 1.08996 * 110.64050 * 237.26690 * 22 20 18 43 43 H 0.96998 * 125.55568 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 2.0401 -0.7213 1.2491 6 1 3.1300 -0.7209 1.2493 7 6 1.5301 -0.0001 2.4984 8 7 1.9178 -0.7567 3.6915 9 6 1.5683 -0.3012 4.9348 10 1 1.0073 0.6160 5.0357 11 6 1.9352 -1.0184 6.0652 12 7 2.6194 -2.1361 5.9422 13 14 1.4591 -0.3966 7.7610 14 1 0.6991 0.8722 7.6278 15 1 0.6133 -1.4106 8.4406 16 1 2.6858 -0.1575 8.5630 17 7 1.5518 -2.1025 1.2491 18 6 2.2286 -3.0565 0.5795 19 8 3.2421 -2.7716 -0.0226 20 6 1.7265 -4.4775 0.5799 21 1 1.3961 -4.7675 1.5772 22 6 0.5840 -4.6481 -0.4398 23 8 1.0974 -5.6325 -1.3832 24 6 2.3295 -6.0022 -1.0160 25 8 2.9873 -6.8191 -1.6294 26 7 2.7695 -5.3937 0.0940 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7488 -1.2494 34 1 1.6766 -0.2072 -2.1393 35 1 3.1300 -0.7207 -1.2496 36 1 1.9648 0.9984 2.5444 37 1 0.4438 0.0782 2.4548 38 1 2.4214 -1.5808 3.6009 39 1 2.8754 -2.6374 6.7320 40 1 0.7414 -2.3304 1.7310 41 1 0.3792 -3.7045 -0.9457 42 1 -0.3155 -5.0210 0.0499 43 1 3.6350 -5.5342 0.5089 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677247386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:46 Heat of formation + Delta-G solvation = -98.382954 kcal Electronic energy + Delta-G solvation = -25886.014872 eV Core-core repulsion = 22159.973354 eV Total energy + Delta-G solvation = -3726.041518 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.93700 -40.05298 -37.71116 -37.13929 -34.74146 -34.56617 -33.48524 -31.28574 -29.99625 -27.82354 -27.25710 -26.88939 -24.82887 -23.71470 -22.50744 -21.67014 -20.76549 -18.80618 -18.30828 -18.05137 -17.37456 -16.86526 -16.30837 -15.84674 -15.46992 -14.94360 -14.67695 -14.43338 -14.25758 -14.02785 -13.79275 -13.70578 -13.61039 -13.24080 -12.84796 -12.56482 -12.30185 -12.05720 -11.92414 -11.51036 -11.35152 -11.21699 -11.06092 -10.92318 -10.85003 -10.83743 -10.65535 -10.34342 -10.27580 -10.05001 -9.86651 -9.32953 -9.01763 -8.82381 -7.07506 -5.90410 -3.20074 2.37236 2.45899 2.59969 3.03693 3.34122 3.40592 3.42602 3.46508 3.86232 4.36471 4.45794 4.50148 4.79169 4.81508 4.91385 4.99525 5.06276 5.19499 5.42122 5.43501 5.56960 5.66967 5.76708 5.80017 5.89591 5.95016 6.00386 6.03930 6.17816 6.31100 6.34118 6.34987 6.48992 6.58954 6.61455 6.76772 7.04530 7.54165 7.57999 7.93965 8.19882 8.27823 9.40055 9.94605 10.29607 11.32013 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.004749 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.703713 B = 5894.449391 C = 7392.682336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.077 4.077 3 C -0.141 4.141 4 C -0.129 4.129 5 C 0.149 3.851 6 H 0.088 0.912 7 C 0.142 3.858 8 N -0.732 5.732 9 C -0.243 4.243 10 H 0.071 0.929 11 C -0.010 4.010 12 N -0.932 5.932 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.699 5.699 18 C 0.504 3.496 19 O -0.521 6.521 20 C 0.073 3.927 21 H 0.132 0.868 22 C 0.054 3.946 23 O -0.325 6.325 24 C 0.651 3.349 25 O -0.523 6.523 26 N -0.706 5.706 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.037 0.963 37 H 0.030 0.970 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.406 0.594 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.690 0.241 -12.009 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.187 4.187 5 C 0.045 3.955 6 H 0.106 0.894 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.374 4.374 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.580 5.580 13 Si 0.737 3.263 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.218 1.218 17 N -0.350 5.350 18 C 0.286 3.714 19 O -0.396 6.396 20 C -0.037 4.037 21 H 0.149 0.851 22 C -0.021 4.021 23 O -0.235 6.235 24 C 0.404 3.596 25 O -0.408 6.408 26 N -0.378 5.378 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.241 0.759 41 H 0.127 0.873 42 H 0.138 0.862 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -5.975 0.071 -12.909 14.225 hybrid contribution -0.032 0.063 1.705 1.706 sum -6.007 0.134 -11.204 12.714 Atomic orbital electron populations 1.21921 0.94540 1.01544 1.01887 1.20915 0.95926 0.95787 0.95216 1.21885 1.01250 0.94840 1.01917 1.21890 1.01743 0.99261 0.95777 1.21345 0.99948 0.79616 0.94640 0.89376 1.21107 0.97495 0.94774 0.85245 1.42356 1.67033 1.27721 1.00539 1.19242 1.29008 1.05578 0.83534 0.91079 1.24732 1.00703 0.97356 0.97874 1.69655 1.43231 1.16566 1.28536 0.86135 0.77646 0.77866 0.84606 1.20525 1.21841 1.21834 1.45904 1.28987 1.08616 1.51528 1.20305 0.84871 0.86338 0.79842 1.90758 1.24211 1.81816 1.42851 1.22367 0.89211 0.90310 1.01827 0.85092 1.24269 0.96196 0.93279 0.88374 1.87275 1.29716 1.56847 1.49688 1.18405 0.80436 0.80613 0.80179 1.91080 1.56622 1.35415 1.57665 1.45642 1.20435 1.43222 1.28521 0.91746 0.93051 0.92984 0.92537 0.92791 0.91799 0.93359 0.93739 0.91962 0.94584 0.95206 0.78153 0.93486 0.75909 0.87345 0.86177 0.71420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 7.97 37.16 0.30 -1.14 16 2 C -0.08 -0.90 0.62 -154.50 -0.10 -0.99 16 3 C -0.14 -1.59 8.12 37.16 0.30 -1.29 16 4 C -0.13 -1.58 7.00 37.16 0.26 -1.32 16 5 C 0.15 2.11 1.69 -67.93 -0.11 2.00 16 6 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 7 C 0.14 2.39 5.10 -4.04 -0.02 2.37 16 8 N -0.73 -16.30 5.43 -59.91 -0.33 -16.63 16 9 C -0.24 -6.20 9.99 -15.06 -0.15 -6.35 16 10 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -26.34 13.06 55.49 0.72 -25.61 16 13 Si 0.91 21.14 29.55 -169.99 -5.02 16.12 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 N -0.70 -8.63 3.64 -53.81 -0.20 -8.82 16 18 C 0.50 6.40 5.31 -10.98 -0.06 6.34 16 19 O -0.52 -8.42 13.69 5.56 0.08 -8.34 16 20 C 0.07 0.72 4.18 -68.19 -0.28 0.44 16 21 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 22 C 0.05 0.44 7.87 37.73 0.30 0.73 16 23 O -0.33 -4.04 11.09 -37.84 -0.42 -4.46 16 24 C 0.65 9.39 9.16 53.71 0.49 9.89 16 25 O -0.52 -9.50 18.04 -19.12 -0.34 -9.84 16 26 N -0.71 -8.43 5.63 -59.36 -0.33 -8.76 16 27 H 0.06 0.68 6.32 -51.93 -0.33 0.36 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.48 7.60 -51.93 -0.39 0.08 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.73 6.54 -51.93 -0.34 0.39 16 33 H 0.05 0.60 5.65 -51.93 -0.29 0.31 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.88 7.53 -51.93 -0.39 0.49 16 36 H 0.04 0.64 6.71 -51.93 -0.35 0.29 16 37 H 0.03 0.49 6.17 -51.93 -0.32 0.17 16 38 H 0.38 9.15 7.33 -40.82 -0.30 8.85 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.41 4.50 8.60 -40.82 -0.35 4.15 16 41 H 0.11 0.77 7.60 -51.92 -0.39 0.38 16 42 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.44 5.02 8.96 -40.82 -0.37 4.65 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -33.13 345.55 -6.11 -39.24 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -6.30 Total: 11.59 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 0.83 Total: 10.31 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.13 Total: -59.83 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.69 Total: -22.64 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.13 -6.11 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677247386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.145 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds