Wall clock time and date at job start Tue Mar 31 2020 05:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46755 * 2 1 4 4 C 1.53004 * 109.46817 * 240.00623 * 2 1 3 5 5 C 1.52996 * 109.47468 * 120.00469 * 2 1 3 6 6 H 1.08992 * 109.47232 * 180.02562 * 5 2 1 7 7 C 1.53003 * 109.46700 * 299.99844 * 5 2 1 8 8 N 1.46503 * 109.46799 * 175.00140 * 7 5 2 9 9 C 1.36942 * 120.00100 * 180.02562 * 8 7 5 10 10 H 1.07993 * 119.99685 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00063 * 179.97438 * 9 8 7 12 12 N 1.31616 * 120.00145 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99773 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47421 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47112 * 120.00100 * 13 11 9 16 16 H 1.48500 * 109.47181 * 240.00121 * 13 11 9 17 17 N 1.46497 * 109.47231 * 59.99713 * 5 2 1 18 18 C 1.34773 * 119.99874 * 85.00061 * 17 5 2 19 19 O 1.21279 * 120.00221 * 0.02562 * 18 17 5 20 20 C 1.50707 * 120.00085 * 179.97438 * 18 17 5 21 21 H 1.08993 * 110.61953 * 317.18435 * 20 18 17 22 22 C 1.54091 * 110.56205 * 80.00158 * 20 18 17 23 23 O 1.45696 * 104.00964 * 118.57323 * 22 20 18 24 24 C 1.33774 * 109.47780 * 359.97438 * 23 22 20 25 25 O 1.21510 * 123.07649 * 179.72908 * 24 23 22 26 26 N 1.34010 * 113.85267 * 0.02562 * 24 23 22 27 27 H 1.09004 * 109.46517 * 299.99604 * 1 2 3 28 28 H 1.09000 * 109.47540 * 59.99363 * 1 2 3 29 29 H 1.08997 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46559 * 180.02562 * 3 2 1 31 31 H 1.08989 * 109.47059 * 300.00084 * 3 2 1 32 32 H 1.08997 * 109.46639 * 60.00872 * 3 2 1 33 33 H 1.08997 * 109.46920 * 299.99423 * 4 2 1 34 34 H 1.09000 * 109.47054 * 59.99717 * 4 2 1 35 35 H 1.09001 * 109.46716 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.47145 * 294.99677 * 7 5 2 37 37 H 1.09001 * 109.47527 * 55.00016 * 7 5 2 38 38 H 0.97000 * 120.00435 * 359.97438 * 8 7 5 39 39 H 0.96993 * 120.00237 * 180.02562 * 12 11 9 40 40 H 0.97004 * 120.00091 * 264.99974 * 17 5 2 41 41 H 1.09009 * 110.52231 * 359.94037 * 22 20 18 42 42 H 1.08996 * 110.64050 * 237.26690 * 22 20 18 43 43 H 0.96998 * 125.55568 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 2.0401 -0.7213 1.2491 6 1 3.1300 -0.7209 1.2493 7 6 1.5301 -0.0001 2.4984 8 7 1.9178 -0.7567 3.6915 9 6 1.5683 -0.3012 4.9348 10 1 1.0073 0.6160 5.0357 11 6 1.9352 -1.0184 6.0652 12 7 2.6194 -2.1361 5.9422 13 14 1.4591 -0.3966 7.7610 14 1 0.6991 0.8722 7.6278 15 1 0.6133 -1.4106 8.4406 16 1 2.6858 -0.1575 8.5630 17 7 1.5518 -2.1025 1.2491 18 6 2.2286 -3.0565 0.5795 19 8 3.2421 -2.7716 -0.0226 20 6 1.7265 -4.4775 0.5799 21 1 1.3961 -4.7675 1.5772 22 6 0.5840 -4.6481 -0.4398 23 8 1.0974 -5.6325 -1.3832 24 6 2.3295 -6.0022 -1.0160 25 8 2.9873 -6.8191 -1.6294 26 7 2.7695 -5.3937 0.0940 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7488 -1.2494 34 1 1.6766 -0.2072 -2.1393 35 1 3.1300 -0.7207 -1.2496 36 1 1.9648 0.9984 2.5444 37 1 0.4438 0.0782 2.4548 38 1 2.4214 -1.5808 3.6009 39 1 2.8754 -2.6374 6.7320 40 1 0.7414 -2.3304 1.7310 41 1 0.3792 -3.7045 -0.9457 42 1 -0.3155 -5.0210 0.0499 43 1 3.6350 -5.5342 0.5089 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677247386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:45 Heat of formation + Delta-G solvation = -124.705471 kcal Electronic energy + Delta-G solvation = -25887.156302 eV Core-core repulsion = 22159.973354 eV Total energy + Delta-G solvation = -3727.182948 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.90814 -41.14349 -38.83903 -38.26148 -36.17739 -35.70978 -34.68761 -33.00459 -30.99182 -29.19236 -28.10239 -27.89352 -26.01632 -25.16081 -23.52544 -23.09177 -21.80421 -19.87964 -19.42756 -19.14948 -18.75639 -18.03398 -17.38117 -17.05210 -16.61147 -16.45272 -15.78820 -15.53606 -15.33401 -15.29608 -14.96806 -14.79131 -14.66904 -14.50161 -14.19415 -13.69683 -13.37524 -13.06344 -13.00285 -12.92982 -12.75344 -12.49965 -12.34132 -12.12704 -12.04994 -12.00143 -11.90347 -11.73283 -11.61579 -11.39591 -11.27323 -10.91193 -10.32622 -9.93027 -8.94936 -7.92228 -5.19763 1.34308 1.46821 1.50052 1.52503 1.59095 1.60475 2.07380 2.57062 2.59239 3.08417 3.42324 3.46746 3.67852 3.76331 3.87399 4.05860 4.08502 4.28180 4.37323 4.43394 4.44633 4.50343 4.67149 4.83898 4.87453 4.94284 4.99317 5.09520 5.11928 5.20404 5.27086 5.34766 5.44612 5.55084 5.57726 5.61577 5.64903 6.06705 6.29792 6.52473 6.87846 7.19285 7.38129 8.11870 8.35110 9.30835 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.004749 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.703713 B = 5894.449391 C = 7392.682336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.122 4.122 5 C 0.160 3.840 6 H 0.054 0.946 7 C 0.144 3.856 8 N -0.741 5.741 9 C -0.237 4.237 10 H 0.078 0.922 11 C -0.069 4.069 12 N -0.966 5.966 13 Si 0.965 3.035 14 H -0.266 1.266 15 H -0.294 1.294 16 H -0.302 1.302 17 N -0.692 5.692 18 C 0.503 3.497 19 O -0.559 6.559 20 C 0.077 3.923 21 H 0.160 0.840 22 C 0.055 3.945 23 O -0.334 6.334 24 C 0.651 3.349 25 O -0.571 6.571 26 N -0.701 5.701 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.050 0.950 38 H 0.375 0.625 39 H 0.249 0.751 40 H 0.415 0.585 41 H 0.121 0.879 42 H 0.166 0.834 43 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.226 1.193 -12.199 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.199 4.199 4 C -0.179 4.179 5 C 0.055 3.945 6 H 0.072 0.928 7 C 0.018 3.982 8 N -0.384 5.384 9 C -0.369 4.369 10 H 0.095 0.905 11 C -0.262 4.262 12 N -0.617 5.617 13 Si 0.795 3.205 14 H -0.190 1.190 15 H -0.221 1.221 16 H -0.230 1.230 17 N -0.343 5.343 18 C 0.288 3.712 19 O -0.437 6.437 20 C -0.032 4.032 21 H 0.177 0.823 22 C -0.019 4.019 23 O -0.244 6.244 24 C 0.404 3.596 25 O -0.459 6.459 26 N -0.372 5.372 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.207 0.793 39 H 0.058 0.942 40 H 0.252 0.748 41 H 0.139 0.861 42 H 0.183 0.817 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -8.575 1.084 -13.100 15.694 hybrid contribution 0.748 -0.111 1.728 1.886 sum -7.826 0.973 -11.372 13.839 Atomic orbital electron populations 1.21899 0.92519 1.02627 1.02513 1.20856 0.97386 0.95467 0.93431 1.21896 1.00534 0.94747 1.02745 1.21794 0.99990 0.99446 0.96654 1.21077 0.97996 0.80762 0.94716 0.92779 1.21231 0.98402 0.94183 0.84398 1.42515 1.66835 1.27772 1.01294 1.19615 1.27357 1.05121 0.84761 0.90452 1.25411 1.01770 0.97967 1.01034 1.69789 1.45209 1.17942 1.28781 0.85202 0.76799 0.77757 0.80750 1.19031 1.22101 1.22977 1.45787 1.29146 1.07948 1.51420 1.20783 0.84182 0.87370 0.78895 1.90759 1.25933 1.82575 1.44477 1.22572 0.88990 0.87726 1.03937 0.82259 1.24739 0.96440 0.93382 0.87388 1.87247 1.28614 1.57672 1.50849 1.18492 0.80782 0.80228 0.80121 1.91032 1.58156 1.37616 1.59141 1.45677 1.20908 1.42875 1.27777 0.92035 0.91507 0.91723 0.93803 0.90906 0.91989 0.93554 0.92078 0.94634 0.94965 0.93181 0.79297 0.94222 0.74793 0.86055 0.81669 0.71402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 7.97 71.98 0.57 -1.74 16 2 C -0.07 -1.51 0.62 -52.18 -0.03 -1.54 16 3 C -0.14 -2.97 8.12 71.98 0.58 -2.38 16 4 C -0.12 -2.80 7.00 71.98 0.50 -2.30 16 5 C 0.16 4.39 1.69 44.99 0.08 4.46 16 6 H 0.05 1.88 7.58 -2.39 -0.02 1.86 16 7 C 0.14 4.68 5.10 86.38 0.44 5.12 16 8 N -0.74 -32.43 5.43 -343.44 -1.87 -34.30 16 9 C -0.24 -11.83 9.99 84.03 0.84 -10.99 16 10 H 0.08 3.71 7.83 -2.91 -0.02 3.69 16 11 C -0.07 -3.66 5.50 84.86 0.47 -3.20 16 12 N -0.97 -54.88 13.06 21.65 0.28 -54.59 16 13 Si 0.96 43.10 29.55 68.60 2.03 45.12 16 14 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 15 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 16 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 17 N -0.69 -15.96 3.64 -442.55 -1.61 -17.57 16 18 C 0.50 12.22 5.31 87.66 0.47 12.69 16 19 O -0.56 -18.19 13.69 -3.03 -0.04 -18.23 16 20 C 0.08 1.36 4.18 44.50 0.19 1.54 16 21 H 0.16 1.99 8.14 -2.39 -0.02 1.97 16 22 C 0.05 0.70 7.87 72.35 0.57 1.27 16 23 O -0.33 -7.72 11.09 -47.34 -0.52 -8.25 16 24 C 0.65 18.55 9.16 129.91 1.19 19.74 16 25 O -0.57 -21.21 18.04 19.65 0.35 -20.86 16 26 N -0.70 -16.31 5.63 -573.41 -3.23 -19.54 16 27 H 0.06 1.09 6.32 -2.38 -0.02 1.07 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.92 7.60 -2.39 -0.02 0.90 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.32 6.54 -2.39 -0.02 1.30 16 33 H 0.05 1.07 5.65 -2.39 -0.01 1.06 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.03 1.00 7.53 -2.39 -0.02 0.99 16 36 H 0.03 1.10 6.71 -2.39 -0.02 1.09 16 37 H 0.05 1.48 6.17 -2.39 -0.01 1.46 16 38 H 0.37 17.80 7.33 -92.71 -0.68 17.12 16 39 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 40 H 0.42 8.11 8.60 -92.70 -0.80 7.31 16 41 H 0.12 1.29 7.60 -2.38 -0.02 1.27 16 42 H 0.17 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.44 10.12 8.96 -92.71 -0.83 9.29 16 Total: -1.00 -73.05 345.55 0.01 -73.04 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -1.25 Total: 32.50 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 5.86 Total: 22.68 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -6.42 Total: -126.00 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -0.21 Total: -47.33 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -73.05 0.01 -73.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677247386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.669 kcal (2) G-P(sol) polarization free energy of solvation -73.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds