Wall clock time and date at job start Tue Mar 31 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01836 * 2 1 4 4 C 1.54268 * 110.03412 * 121.39209 * 2 1 3 5 5 C 1.54889 * 104.19557 * 95.67800 * 4 2 1 6 6 C 1.54886 * 102.75267 * 37.94067 * 5 4 2 7 7 C 1.53875 * 110.03401 * 238.61204 * 2 1 3 8 8 O 1.42901 * 110.03270 * 359.97438 * 7 2 1 9 9 C 1.52994 * 110.03731 * 121.42797 * 7 2 1 10 10 N 1.46497 * 109.47512 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00419 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99315 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00240 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99984 * 180.02562 * 13 11 10 15 15 C 1.50693 * 109.47101 * 180.02562 * 14 13 11 16 16 O 1.21291 * 120.00191 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00266 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00211 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00317 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00013 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00264 * 180.02562 * 20 18 17 22 22 Si 1.86808 * 119.99928 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47013 * 90.00205 * 22 20 18 24 24 H 1.48502 * 109.46940 * 210.00403 * 22 20 18 25 25 H 1.48501 * 109.46820 * 329.99858 * 22 20 18 26 26 H 1.09002 * 109.47153 * 300.69904 * 1 2 3 27 27 H 1.09001 * 109.46832 * 180.70094 * 1 2 3 28 28 H 1.09004 * 109.47261 * 60.70076 * 1 2 3 29 29 H 1.09005 * 110.48425 * 214.35099 * 4 2 1 30 30 H 1.08997 * 110.48497 * 336.86496 * 4 2 1 31 31 H 1.09000 * 110.75751 * 156.25853 * 5 4 2 32 32 H 1.09003 * 110.75020 * 279.44393 * 5 4 2 33 33 H 1.09000 * 110.48512 * 80.73684 * 6 5 4 34 34 H 1.08993 * 110.48832 * 203.24979 * 6 5 4 35 35 H 0.96702 * 114.00260 * 180.02562 * 8 7 2 36 36 H 1.09002 * 109.47136 * 300.00119 * 9 7 2 37 37 H 1.09001 * 109.47457 * 60.00024 * 9 7 2 38 38 H 0.97006 * 119.99965 * 0.02562 * 10 9 7 39 39 H 0.97001 * 119.99632 * 0.02562 * 13 11 10 40 40 H 1.09004 * 109.47128 * 300.00439 * 14 13 11 41 41 H 1.08999 * 109.47189 * 60.00330 * 14 13 11 42 42 H 0.97001 * 119.99519 * 0.02562 * 17 15 14 43 43 H 0.96996 * 120.00295 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 1.2372 5 6 2.3282 -2.1898 0.7200 6 6 2.8875 -1.9410 -0.7027 7 6 2.0571 -0.7529 -1.2341 8 8 0.9635 -1.2325 -2.0190 9 6 2.9408 0.1713 -2.0741 10 7 3.4351 -0.5572 -3.2451 11 6 4.2379 0.0610 -4.1339 12 8 4.5522 1.2231 -3.9635 13 7 4.6931 -0.6094 -5.2109 14 6 5.5661 0.0624 -6.1767 15 6 5.9302 -0.8992 -7.2784 16 8 5.5021 -2.0339 -7.2591 17 7 6.7306 -0.4981 -8.2858 18 6 7.0622 -1.3730 -9.2878 19 1 6.6817 -2.3836 -9.2701 20 6 7.8879 -0.9596 -10.3261 21 7 8.2054 -1.7981 -11.2868 22 14 8.5467 0.7882 -10.3562 23 1 9.8437 0.8408 -9.6351 24 1 8.7450 1.2182 -11.7638 25 1 7.5749 1.6949 -9.6940 26 1 -0.3633 0.5247 0.8837 27 1 -0.3633 -1.0276 0.0126 28 1 -0.3634 0.5029 -0.8962 29 1 2.9812 -0.2993 1.5967 30 1 1.3070 -0.7667 2.0266 31 1 3.0677 -2.6925 1.3434 32 1 1.4036 -2.7658 0.6794 33 1 3.9440 -1.6769 -0.6564 34 1 2.7423 -2.8211 -1.3291 35 1 1.2311 -1.7169 -2.8120 36 1 2.3581 1.0323 -2.4016 37 1 3.7850 0.5110 -1.4741 38 1 3.1840 -1.4842 -3.3812 39 1 4.4425 -1.5366 -5.3465 40 1 5.0456 0.9208 -6.6013 41 1 6.4726 0.3995 -5.6739 42 1 7.0727 0.4095 -8.3014 43 1 8.7815 -1.5094 -12.0118 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001682373965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:35 Heat of formation + Delta-G solvation = -126.506645 kcal Electronic energy + Delta-G solvation = -24244.980315 eV Core-core repulsion = 20517.719263 eV Total energy + Delta-G solvation = -3727.261052 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52246 -39.49408 -38.35057 -35.55943 -34.57929 -34.27836 -33.74868 -31.81658 -31.42080 -29.64560 -27.59563 -26.27166 -24.51305 -23.55742 -21.45141 -20.68403 -19.81600 -19.64014 -18.89134 -18.32571 -16.81741 -16.43438 -15.99622 -15.78021 -15.59814 -15.32322 -14.94207 -14.51228 -14.29197 -14.08212 -13.70729 -13.56334 -13.27672 -13.14938 -12.92601 -12.71437 -12.50692 -12.35240 -12.18029 -11.97309 -11.61763 -11.35328 -11.24632 -10.96981 -10.95236 -10.81500 -10.65210 -10.21518 -10.16448 -10.07245 -9.71307 -9.31081 -8.78860 -8.74560 -8.31944 -6.42153 -3.94834 2.65037 2.98882 3.03614 3.11844 3.27179 3.55733 3.77287 4.02297 4.07823 4.11261 4.30226 4.34424 4.59401 4.78561 4.91101 4.97908 5.06092 5.12884 5.20562 5.23615 5.37715 5.50917 5.55703 5.58445 5.60421 5.64677 5.69432 5.77788 5.81184 5.83337 5.91775 5.93660 6.16956 6.32749 6.59171 6.90905 7.30163 7.43429 7.98458 8.09474 8.42691 8.66603 8.80185 9.28353 9.61810 10.69952 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.038310 B = 0.002436 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.696759 B =11490.233992 C =11760.013869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 H 0.081 0.919 4 C -0.122 4.122 5 C -0.120 4.120 6 C -0.152 4.152 7 C 0.123 3.877 8 O -0.547 6.547 9 C 0.119 3.881 10 N -0.748 5.748 11 C 0.707 3.293 12 O -0.596 6.596 13 N -0.724 5.724 14 C 0.126 3.874 15 C 0.438 3.562 16 O -0.580 6.580 17 N -0.576 5.576 18 C -0.310 4.310 19 H 0.121 0.879 20 C 0.045 3.955 21 N -0.874 5.874 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.267 1.267 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.372 0.628 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.393 0.607 39 H 0.408 0.592 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.375 0.625 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.815 3.245 22.991 26.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.100 4.100 3 H 0.100 0.900 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.190 4.190 7 C 0.082 3.918 8 O -0.352 6.352 9 C -0.006 4.006 10 N -0.406 5.406 11 C 0.406 3.594 12 O -0.475 6.475 13 N -0.382 5.382 14 C -0.003 4.003 15 C 0.224 3.776 16 O -0.464 6.464 17 N -0.214 5.214 18 C -0.439 4.439 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.513 5.513 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.192 1.192 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.220 0.780 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.227 0.773 39 H 0.245 0.755 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.208 0.792 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.016 3.810 23.385 26.566 hybrid contribution 0.853 0.218 -0.914 1.269 sum -11.164 4.028 22.471 25.412 Atomic orbital electron populations 1.21517 0.93571 1.02342 1.01148 1.21721 0.97462 0.98913 0.91907 0.90031 1.22471 1.01079 0.95480 0.96899 1.22421 1.00983 0.96826 0.95520 1.23120 1.00158 0.98037 0.97653 1.22151 0.85902 0.92822 0.90958 1.86627 1.32934 1.75781 1.39902 1.21944 0.97638 0.95006 0.86017 1.44958 1.54172 1.15599 1.25835 1.15802 0.79077 0.84743 0.79768 1.90912 1.63363 1.15651 1.77555 1.44741 1.52932 1.16670 1.23819 1.20808 0.94789 0.95040 0.89634 1.19647 0.84298 0.88971 0.84664 1.90531 1.57267 1.20421 1.78222 1.42117 1.43964 1.13273 1.22010 1.19434 1.28214 0.96768 0.99456 0.86090 1.25071 0.96975 0.98337 0.95536 1.69615 1.35342 1.35093 1.11252 0.86668 0.79992 0.83947 0.78882 1.19387 1.19974 1.19186 0.93266 0.92127 0.92189 0.91333 0.91075 0.91455 0.91180 0.90364 0.90857 0.77972 0.90873 0.90750 0.77334 0.75491 0.89863 0.89869 0.79215 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 8.08 37.16 0.30 -0.68 16 2 C -0.08 -0.60 3.15 -89.50 -0.28 -0.88 16 3 H 0.08 0.58 7.67 -51.93 -0.40 0.19 16 4 C -0.12 -0.76 6.37 -25.07 -0.16 -0.92 16 5 C -0.12 -0.77 6.91 -24.74 -0.17 -0.95 16 6 C -0.15 -1.06 5.57 -25.01 -0.14 -1.20 16 7 C 0.12 0.96 1.01 -89.44 -0.09 0.87 16 8 O -0.55 -4.54 11.12 -35.23 -0.39 -4.93 16 9 C 0.12 1.17 4.45 -4.05 -0.02 1.15 16 10 N -0.75 -7.99 5.13 -65.23 -0.33 -8.33 16 11 C 0.71 10.68 8.57 -86.92 -0.74 9.94 16 12 O -0.60 -11.09 16.34 5.29 0.09 -11.01 16 13 N -0.72 -11.28 5.53 -66.42 -0.37 -11.65 16 14 C 0.13 2.17 6.15 -5.20 -0.03 2.14 16 15 C 0.44 9.53 7.85 -10.99 -0.09 9.44 16 16 O -0.58 -14.42 15.24 5.55 0.08 -14.34 16 17 N -0.58 -13.31 5.09 -10.97 -0.06 -13.36 16 18 C -0.31 -8.50 10.16 -14.94 -0.15 -8.65 16 19 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 20 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 21 N -0.87 -24.85 13.96 55.50 0.77 -24.08 16 22 Si 0.88 18.93 27.74 -169.99 -4.71 14.21 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.50 7.84 -51.93 -0.41 0.09 16 28 H 0.06 0.52 7.90 -51.93 -0.41 0.11 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.40 7.84 -51.93 -0.41 0.00 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.58 7.84 -51.93 -0.41 0.18 16 34 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 35 H 0.37 2.28 7.81 45.56 0.36 2.64 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 38 H 0.39 3.19 7.21 -40.82 -0.29 2.90 16 39 H 0.41 6.13 7.45 -40.82 -0.30 5.83 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 43 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -33.20 350.85 -7.17 -40.36 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -5.86 Total: 16.48 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -1.67 Total: 11.36 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.02 Total: -57.42 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.22 Total: -30.28 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.20 -7.17 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682373965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.143 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds