Wall clock time and date at job start Tue Mar 31 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01836 * 2 1 4 4 C 1.54268 * 110.03412 * 121.39209 * 2 1 3 5 5 C 1.54889 * 104.19557 * 95.67800 * 4 2 1 6 6 C 1.54886 * 102.75267 * 37.94067 * 5 4 2 7 7 C 1.53875 * 110.03401 * 238.61204 * 2 1 3 8 8 O 1.42901 * 110.03270 * 359.97438 * 7 2 1 9 9 C 1.52994 * 110.03731 * 121.42797 * 7 2 1 10 10 N 1.46497 * 109.47512 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00419 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99315 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00240 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99984 * 180.02562 * 13 11 10 15 15 C 1.50693 * 109.47101 * 180.02562 * 14 13 11 16 16 O 1.21291 * 120.00191 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00266 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00211 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00317 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00013 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00264 * 180.02562 * 20 18 17 22 22 Si 1.86808 * 119.99928 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47013 * 90.00205 * 22 20 18 24 24 H 1.48502 * 109.46940 * 210.00403 * 22 20 18 25 25 H 1.48501 * 109.46820 * 329.99858 * 22 20 18 26 26 H 1.09002 * 109.47153 * 300.69904 * 1 2 3 27 27 H 1.09001 * 109.46832 * 180.70094 * 1 2 3 28 28 H 1.09004 * 109.47261 * 60.70076 * 1 2 3 29 29 H 1.09005 * 110.48425 * 214.35099 * 4 2 1 30 30 H 1.08997 * 110.48497 * 336.86496 * 4 2 1 31 31 H 1.09000 * 110.75751 * 156.25853 * 5 4 2 32 32 H 1.09003 * 110.75020 * 279.44393 * 5 4 2 33 33 H 1.09000 * 110.48512 * 80.73684 * 6 5 4 34 34 H 1.08993 * 110.48832 * 203.24979 * 6 5 4 35 35 H 0.96702 * 114.00260 * 180.02562 * 8 7 2 36 36 H 1.09002 * 109.47136 * 300.00119 * 9 7 2 37 37 H 1.09001 * 109.47457 * 60.00024 * 9 7 2 38 38 H 0.97006 * 119.99965 * 0.02562 * 10 9 7 39 39 H 0.97001 * 119.99632 * 0.02562 * 13 11 10 40 40 H 1.09004 * 109.47128 * 300.00439 * 14 13 11 41 41 H 1.08999 * 109.47189 * 60.00330 * 14 13 11 42 42 H 0.97001 * 119.99519 * 0.02562 * 17 15 14 43 43 H 0.96996 * 120.00295 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 1.2372 5 6 2.3282 -2.1898 0.7200 6 6 2.8875 -1.9410 -0.7027 7 6 2.0571 -0.7529 -1.2341 8 8 0.9635 -1.2325 -2.0190 9 6 2.9408 0.1713 -2.0741 10 7 3.4351 -0.5572 -3.2451 11 6 4.2379 0.0610 -4.1339 12 8 4.5522 1.2231 -3.9635 13 7 4.6931 -0.6094 -5.2109 14 6 5.5661 0.0624 -6.1767 15 6 5.9302 -0.8992 -7.2784 16 8 5.5021 -2.0339 -7.2591 17 7 6.7306 -0.4981 -8.2858 18 6 7.0622 -1.3730 -9.2878 19 1 6.6817 -2.3836 -9.2701 20 6 7.8879 -0.9596 -10.3261 21 7 8.2054 -1.7981 -11.2868 22 14 8.5467 0.7882 -10.3562 23 1 9.8437 0.8408 -9.6351 24 1 8.7450 1.2182 -11.7638 25 1 7.5749 1.6949 -9.6940 26 1 -0.3633 0.5247 0.8837 27 1 -0.3633 -1.0276 0.0126 28 1 -0.3634 0.5029 -0.8962 29 1 2.9812 -0.2993 1.5967 30 1 1.3070 -0.7667 2.0266 31 1 3.0677 -2.6925 1.3434 32 1 1.4036 -2.7658 0.6794 33 1 3.9440 -1.6769 -0.6564 34 1 2.7423 -2.8211 -1.3291 35 1 1.2311 -1.7169 -2.8120 36 1 2.3581 1.0323 -2.4016 37 1 3.7850 0.5110 -1.4741 38 1 3.1840 -1.4842 -3.3812 39 1 4.4425 -1.5366 -5.3465 40 1 5.0456 0.9208 -6.6013 41 1 6.4726 0.3995 -5.6739 42 1 7.0727 0.4095 -8.3014 43 1 8.7815 -1.5094 -12.0118 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001682373965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:35 Heat of formation + Delta-G solvation = -154.130386 kcal Electronic energy + Delta-G solvation = -24246.178170 eV Core-core repulsion = 20517.719263 eV Total energy + Delta-G solvation = -3728.458908 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48511 -40.61184 -39.92755 -36.34424 -36.18904 -35.31193 -35.25814 -33.82822 -31.98846 -30.59511 -28.92886 -26.96977 -26.15829 -24.44381 -22.30129 -21.56084 -21.46309 -20.65237 -20.37881 -19.65482 -17.87845 -17.49978 -17.12790 -16.94538 -16.73807 -16.41780 -16.38029 -15.87769 -15.63833 -15.11218 -14.90190 -14.61439 -14.37177 -14.30013 -14.00078 -13.89237 -13.64321 -13.52618 -13.28444 -12.97933 -12.85082 -12.44409 -12.18288 -12.00173 -11.87480 -11.67992 -11.57811 -11.50746 -11.40428 -11.32537 -10.84833 -10.65135 -10.47601 -10.32059 -9.87374 -8.45389 -6.07319 1.31560 1.34390 1.43815 1.53469 1.79028 2.08615 2.20690 2.77719 3.10978 3.18421 3.24293 3.47651 3.66091 3.68024 3.99486 4.24746 4.29250 4.40234 4.40805 4.43767 4.45153 4.62110 4.67088 4.68774 4.85239 4.98589 5.04236 5.05823 5.15027 5.24893 5.27101 5.33875 5.37246 5.44117 5.49003 5.57761 5.86699 5.88797 6.48908 6.74919 6.78370 6.96967 7.28673 7.48525 7.78260 8.70954 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.038310 B = 0.002436 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.696759 B =11490.233992 C =11760.013869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.086 4.086 3 H 0.082 0.918 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.151 4.151 7 C 0.130 3.870 8 O -0.556 6.556 9 C 0.121 3.879 10 N -0.730 5.730 11 C 0.707 3.293 12 O -0.629 6.629 13 N -0.725 5.725 14 C 0.138 3.862 15 C 0.446 3.554 16 O -0.614 6.614 17 N -0.578 5.578 18 C -0.331 4.331 19 H 0.064 0.936 20 C -0.009 4.009 21 N -0.926 5.926 22 Si 0.958 3.042 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.233 1.233 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.381 0.619 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.407 0.593 39 H 0.410 0.590 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.392 0.608 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.856 5.127 24.760 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.105 4.105 3 H 0.101 0.899 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.188 4.188 7 C 0.089 3.911 8 O -0.364 6.364 9 C -0.003 4.003 10 N -0.387 5.387 11 C 0.406 3.594 12 O -0.511 6.511 13 N -0.383 5.383 14 C 0.009 3.991 15 C 0.234 3.766 16 O -0.500 6.500 17 N -0.218 5.218 18 C -0.460 4.460 19 H 0.082 0.918 20 C -0.209 4.209 21 N -0.566 5.566 22 Si 0.778 3.222 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.156 1.156 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.230 0.770 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.243 0.757 39 H 0.248 0.752 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.228 0.772 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.095 5.663 25.191 28.512 hybrid contribution 0.767 -0.492 -1.406 1.676 sum -11.327 5.171 23.784 26.847 Atomic orbital electron populations 1.21467 0.93772 1.01871 1.01026 1.21789 0.97279 0.99177 0.92226 0.89930 1.22470 1.01533 0.95135 0.96497 1.22422 1.01052 0.96982 0.95198 1.23109 0.99760 0.97770 0.98210 1.22106 0.85538 0.92804 0.90646 1.86625 1.33322 1.75920 1.40490 1.22011 0.97632 0.95083 0.85590 1.44816 1.52637 1.16194 1.25043 1.15882 0.79281 0.84309 0.79882 1.90891 1.64747 1.17136 1.78312 1.44682 1.52962 1.16753 1.23873 1.20693 0.96163 0.93837 0.88383 1.20493 0.82343 0.89065 0.84725 1.90521 1.57999 1.22447 1.79008 1.41925 1.44807 1.13515 1.21580 1.19024 1.29578 0.95613 1.01744 0.91792 1.26068 0.96548 1.03964 0.94271 1.69777 1.36390 1.38083 1.12307 0.85449 0.80124 0.77264 0.79317 1.18085 1.19886 1.15585 0.92108 0.92745 0.93553 0.90757 0.90318 0.90660 0.91431 0.90638 0.90227 0.76979 0.92257 0.90983 0.75652 0.75181 0.88163 0.87978 0.77224 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 8.08 71.98 0.58 -1.16 16 2 C -0.09 -1.13 3.15 -10.07 -0.03 -1.17 16 3 H 0.08 1.08 7.67 -2.39 -0.02 1.06 16 4 C -0.12 -1.26 6.37 31.67 0.20 -1.05 16 5 C -0.12 -1.30 6.91 31.88 0.22 -1.08 16 6 C -0.15 -1.82 5.57 31.71 0.18 -1.65 16 7 C 0.13 1.84 1.01 -10.03 -0.01 1.83 16 8 O -0.56 -8.49 11.12 -148.98 -1.66 -10.15 16 9 C 0.12 2.22 4.45 86.38 0.38 2.61 16 10 N -0.73 -14.42 5.13 -478.54 -2.45 -16.87 16 11 C 0.71 20.14 8.57 179.05 1.53 21.68 16 12 O -0.63 -22.34 16.34 -3.99 -0.07 -22.40 16 13 N -0.72 -21.36 5.53 -482.31 -2.67 -24.03 16 14 C 0.14 4.44 6.15 85.63 0.53 4.97 16 15 C 0.45 19.09 7.85 87.65 0.69 19.78 16 16 O -0.61 -30.94 15.24 -3.06 -0.05 -30.98 16 17 N -0.58 -26.28 5.09 -306.99 -1.56 -27.85 16 18 C -0.33 -18.60 10.16 84.04 0.85 -17.75 16 19 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 20 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 21 N -0.93 -54.13 13.96 21.66 0.30 -53.82 16 22 Si 0.96 37.87 27.74 68.60 1.90 39.78 16 23 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 24 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 25 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.83 7.84 -2.39 -0.02 0.81 16 28 H 0.05 0.77 7.90 -2.38 -0.02 0.75 16 29 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.08 0.72 7.84 -2.39 -0.02 0.71 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.98 7.84 -2.39 -0.02 0.96 16 34 H 0.08 0.87 8.07 -2.39 -0.02 0.85 16 35 H 0.38 4.07 7.81 -74.06 -0.58 3.49 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.39 8.12 -2.39 -0.02 1.37 16 38 H 0.41 5.86 7.21 -92.70 -0.67 5.20 16 39 H 0.41 11.84 7.45 -92.71 -0.69 11.15 16 40 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 42 H 0.39 14.96 5.76 -92.71 -0.53 14.43 16 43 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -74.09 350.85 -2.12 -76.22 By element: Atomic # 1 Polarization: 44.56 SS G_CDS: -1.47 Total: 43.09 kcal Atomic # 6 Polarization: 21.42 SS G_CDS: 5.59 Total: 27.01 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -6.38 Total: -122.56 kcal Atomic # 8 Polarization: -61.76 SS G_CDS: -1.77 Total: -63.53 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 1.90 Total: 39.78 kcal Total: -74.09 -2.12 -76.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682373965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.914 kcal (2) G-P(sol) polarization free energy of solvation -74.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds