Wall clock time and date at job start Tue Mar 31 2020 05:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 H 1.09000 * 109.99530 * 171.91970 * 3 2 1 5 5 C 1.54326 * 109.88456 * 293.01554 * 3 2 1 6 6 H 1.08997 * 110.72118 * 215.59090 * 5 3 2 7 7 C 1.53005 * 110.71578 * 338.68162 * 5 3 2 8 8 O 1.42899 * 109.46652 * 185.66969 * 7 5 3 9 9 C 1.55153 * 102.94111 * 97.22300 * 5 3 2 10 10 C 1.54906 * 101.58094 * 35.50339 * 9 5 3 11 11 N 1.47017 * 109.88049 * 50.82357 * 3 2 1 12 12 C 1.34774 * 125.65255 * 59.47720 * 11 3 2 13 13 O 1.21592 * 119.99724 * 5.03931 * 12 11 3 14 14 N 1.34779 * 120.00455 * 185.03763 * 12 11 3 15 15 C 1.46498 * 119.99903 * 179.97438 * 14 12 11 16 16 C 1.50707 * 109.46845 * 180.02562 * 15 14 12 17 17 O 1.21289 * 119.99919 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99686 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99827 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99960 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99910 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99973 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99550 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47378 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.46798 * 119.99999 * 23 21 19 26 26 H 1.48501 * 109.47021 * 239.99363 * 23 21 19 27 27 H 1.08995 * 109.47209 * 173.89361 * 1 2 3 28 28 H 1.09004 * 109.46804 * 293.89466 * 1 2 3 29 29 H 1.08996 * 109.47093 * 53.89216 * 1 2 3 30 30 H 1.09004 * 109.46631 * 240.00298 * 2 1 3 31 31 H 1.08993 * 109.47566 * 120.00612 * 2 1 3 32 32 H 1.08999 * 109.47189 * 305.66959 * 7 5 3 33 33 H 1.08994 * 109.46873 * 65.67295 * 7 5 3 34 34 H 0.96701 * 114.00082 * 179.97438 * 8 7 5 35 35 H 1.09007 * 111.00318 * 153.58030 * 9 5 3 36 36 H 1.09000 * 111.00667 * 277.42486 * 9 5 3 37 37 H 1.08997 * 110.36824 * 81.83475 * 10 9 5 38 38 H 1.09003 * 110.36349 * 204.14644 * 10 9 5 39 39 H 0.97001 * 119.99768 * 0.02562 * 14 12 11 40 40 H 1.09003 * 109.47420 * 299.99557 * 15 14 12 41 41 H 1.08992 * 109.47402 * 60.00233 * 15 14 12 42 42 H 0.97000 * 120.00675 * 0.02562 * 18 16 15 43 43 H 0.96997 * 119.99560 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1204 1.4558 0.1440 5 6 1.6801 2.1265 -1.3357 6 1 2.4688 2.8137 -1.6420 7 6 1.4202 1.0839 -2.4250 8 8 1.2199 1.7429 -3.6770 9 6 0.3807 2.9009 -0.9904 10 6 0.6581 3.3384 0.4695 11 7 1.3833 2.2050 1.0718 12 6 1.4348 1.9153 2.3870 13 8 2.1390 1.0062 2.7821 14 7 0.7059 2.6333 3.2643 15 6 0.7616 2.3180 4.6939 16 6 -0.1383 3.2601 5.4515 17 8 -0.7641 4.1114 4.8559 18 7 -0.2476 3.1565 6.7908 19 6 -1.0659 4.0139 7.4801 20 1 -1.6232 4.7719 6.9497 21 6 -1.1782 3.9075 8.8609 22 7 -0.5005 2.9848 9.5061 23 14 -2.2936 5.0752 9.7999 24 1 -2.9407 6.0140 8.8485 25 1 -3.3368 4.2961 10.5141 26 1 -1.4896 5.8440 10.7837 27 1 -0.3633 -1.0218 -0.1093 28 1 -0.3633 0.4163 0.9396 29 1 -0.3633 0.6056 -0.8302 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 2.2775 0.4149 -2.4995 33 1 0.5305 0.5076 -2.1713 34 1 1.0498 1.1418 -4.4151 35 1 0.2573 3.7668 -1.6411 36 1 -0.4897 2.2470 -1.0437 37 1 1.2762 4.2360 0.4856 38 1 -0.2793 3.5129 0.9977 39 1 0.1439 3.3583 2.9491 40 1 0.4293 1.2921 4.8529 41 1 1.7856 2.4276 5.0505 42 1 0.2531 2.4760 7.2672 43 1 -0.5792 2.9104 10.4700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686402648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:18 Heat of formation + Delta-G solvation = -107.708531 kcal Electronic energy + Delta-G solvation = -24924.497554 eV Core-core repulsion = 21198.051649 eV Total energy + Delta-G solvation = -3726.445905 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79757 -38.87171 -37.94476 -36.53423 -34.47451 -33.84542 -33.03782 -31.79716 -31.34558 -28.81322 -27.80942 -25.84723 -24.33211 -23.61186 -22.18941 -20.34958 -19.62712 -19.09809 -18.16514 -18.02141 -17.70332 -16.53504 -15.87863 -15.68817 -15.33350 -14.89808 -14.74337 -14.51421 -14.16062 -13.92238 -13.72814 -13.58250 -13.36950 -12.93245 -12.90095 -12.38430 -12.24077 -12.13132 -12.01773 -11.77349 -11.62603 -11.24434 -11.20679 -11.13898 -10.82794 -10.46884 -10.40513 -10.31940 -10.08757 -9.88584 -9.63988 -8.88933 -8.61543 -8.40652 -8.09127 -6.50764 -3.92669 2.65985 3.10648 3.22789 3.29559 3.39886 3.76133 3.76835 4.03859 4.19649 4.31244 4.40804 4.73024 4.83409 4.88790 4.93343 5.03148 5.04567 5.17941 5.19210 5.24654 5.34985 5.45558 5.55032 5.56906 5.77689 5.82789 5.87394 5.92467 5.99394 6.02299 6.07257 6.10509 6.26292 6.39055 6.78795 7.20813 7.27141 7.46924 7.93554 8.20936 8.46152 8.82399 9.05586 9.40564 9.88397 10.66288 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.036495 B = 0.002751 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.049356 B =10175.424011 C =10564.933111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.142 4.142 3 C 0.167 3.833 4 H 0.076 0.924 5 C -0.096 4.096 6 H 0.091 0.909 7 C 0.077 3.923 8 O -0.575 6.575 9 C -0.124 4.124 10 C 0.096 3.904 11 N -0.632 5.632 12 C 0.725 3.275 13 O -0.593 6.593 14 N -0.723 5.723 15 C 0.129 3.871 16 C 0.430 3.570 17 O -0.598 6.598 18 N -0.550 5.550 19 C -0.304 4.304 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.932 3.068 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.379 0.621 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.406 0.594 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 -5.009 -22.165 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.180 4.180 3 C 0.062 3.938 4 H 0.094 0.906 5 C -0.115 4.115 6 H 0.110 0.890 7 C 0.000 4.000 8 O -0.380 6.380 9 C -0.162 4.162 10 C -0.027 4.027 11 N -0.371 5.371 12 C 0.427 3.573 13 O -0.472 6.472 14 N -0.381 5.381 15 C 0.000 4.000 16 C 0.215 3.785 17 O -0.484 6.484 18 N -0.185 5.185 19 C -0.433 4.433 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.535 5.535 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.226 0.774 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.244 0.756 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.230 0.770 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.755 -4.630 -21.521 22.331 hybrid contribution -0.523 -0.027 0.506 0.728 sum 3.232 -4.656 -21.015 21.766 Atomic orbital electron populations 1.22024 0.95588 1.01268 1.02416 1.21989 0.96800 0.96149 1.03104 1.21226 0.96878 0.91031 0.84632 0.90593 1.22157 0.99181 0.97433 0.92750 0.89046 1.22511 1.00268 0.93858 0.83364 1.86455 1.94819 1.38347 1.18409 1.22919 0.97364 1.00867 0.95014 1.22325 0.96934 0.89651 0.93790 1.47474 1.55261 1.30356 1.04005 1.15301 0.80640 0.82123 0.79277 1.90892 1.45121 1.33711 1.77463 1.44812 1.48907 1.38140 1.06244 1.20784 1.00492 0.99075 0.79629 1.19762 0.87202 0.87977 0.83544 1.90487 1.50612 1.39212 1.68128 1.41795 1.40389 1.31510 1.04771 1.19775 1.21571 1.12497 0.89473 0.87649 1.25327 0.97997 0.97667 0.96792 1.69624 1.41183 1.33078 1.09614 0.85760 0.79387 0.79706 0.79243 1.19144 1.20621 1.20623 0.93079 0.92471 0.91871 0.91189 0.90130 0.93259 0.91905 0.77398 0.89650 0.89987 0.91276 0.90453 0.75576 0.90065 0.90036 0.77019 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.43 37.16 0.31 -1.28 16 2 C -0.14 -1.48 4.98 -26.73 -0.13 -1.61 16 3 C 0.17 1.82 3.24 -66.95 -0.22 1.60 16 4 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 5 C -0.10 -0.82 3.01 -88.78 -0.27 -1.09 16 6 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 7 C 0.08 0.54 5.07 37.16 0.19 0.73 16 8 O -0.57 -4.19 13.61 -35.23 -0.48 -4.67 16 9 C -0.12 -1.07 5.95 -24.59 -0.15 -1.21 16 10 C 0.10 1.02 6.68 -2.53 -0.02 1.01 16 11 N -0.63 -8.29 2.21 -168.70 -0.37 -8.66 16 12 C 0.72 12.29 7.75 -86.92 -0.67 11.62 16 13 O -0.59 -11.74 15.57 5.28 0.08 -11.66 16 14 N -0.72 -12.72 5.49 -66.41 -0.36 -13.08 16 15 C 0.13 2.45 6.15 -5.19 -0.03 2.42 16 16 C 0.43 9.97 7.85 -10.98 -0.09 9.88 16 17 O -0.60 -15.40 15.24 5.55 0.08 -15.32 16 18 N -0.55 -13.75 5.29 -10.96 -0.06 -13.80 16 19 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 20 H 0.11 3.00 7.16 -52.48 -0.38 2.62 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -24.02 13.05 55.50 0.72 -23.30 16 23 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.74 7.24 -51.93 -0.38 0.36 16 29 H 0.06 0.55 3.25 -51.93 -0.17 0.38 16 30 H 0.07 0.55 6.06 -51.93 -0.31 0.24 16 31 H 0.08 1.07 7.16 -51.93 -0.37 0.70 16 32 H 0.05 0.30 7.24 -51.93 -0.38 -0.07 16 33 H 0.06 0.42 4.87 -51.93 -0.25 0.16 16 34 H 0.38 1.12 9.12 45.56 0.42 1.54 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.70 5.74 -51.93 -0.30 0.40 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.85 7.12 -51.93 -0.37 0.48 16 39 H 0.41 7.04 5.83 -40.82 -0.24 6.81 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -32.80 339.59 -6.74 -39.54 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -5.14 Total: 16.06 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: -1.31 Total: 14.18 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.07 Total: -58.84 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.31 Total: -31.65 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.80 -6.74 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686402648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.167 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds