Wall clock time and date at job start Tue Mar 31 2020 05:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 H 1.09000 * 109.99530 * 171.91970 * 3 2 1 5 5 C 1.54326 * 109.88456 * 293.01554 * 3 2 1 6 6 H 1.08997 * 110.72118 * 215.59090 * 5 3 2 7 7 C 1.53005 * 110.71578 * 338.68162 * 5 3 2 8 8 O 1.42899 * 109.46652 * 185.66969 * 7 5 3 9 9 C 1.55153 * 102.94111 * 97.22300 * 5 3 2 10 10 C 1.54906 * 101.58094 * 35.50339 * 9 5 3 11 11 N 1.47017 * 109.88049 * 50.82357 * 3 2 1 12 12 C 1.34774 * 125.65255 * 59.47720 * 11 3 2 13 13 O 1.21592 * 119.99724 * 5.03931 * 12 11 3 14 14 N 1.34779 * 120.00455 * 185.03763 * 12 11 3 15 15 C 1.46498 * 119.99903 * 179.97438 * 14 12 11 16 16 C 1.50707 * 109.46845 * 180.02562 * 15 14 12 17 17 O 1.21289 * 119.99919 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99686 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99827 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99960 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99910 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99973 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99550 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47378 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.46798 * 119.99999 * 23 21 19 26 26 H 1.48501 * 109.47021 * 239.99363 * 23 21 19 27 27 H 1.08995 * 109.47209 * 173.89361 * 1 2 3 28 28 H 1.09004 * 109.46804 * 293.89466 * 1 2 3 29 29 H 1.08996 * 109.47093 * 53.89216 * 1 2 3 30 30 H 1.09004 * 109.46631 * 240.00298 * 2 1 3 31 31 H 1.08993 * 109.47566 * 120.00612 * 2 1 3 32 32 H 1.08999 * 109.47189 * 305.66959 * 7 5 3 33 33 H 1.08994 * 109.46873 * 65.67295 * 7 5 3 34 34 H 0.96701 * 114.00082 * 179.97438 * 8 7 5 35 35 H 1.09007 * 111.00318 * 153.58030 * 9 5 3 36 36 H 1.09000 * 111.00667 * 277.42486 * 9 5 3 37 37 H 1.08997 * 110.36824 * 81.83475 * 10 9 5 38 38 H 1.09003 * 110.36349 * 204.14644 * 10 9 5 39 39 H 0.97001 * 119.99768 * 0.02562 * 14 12 11 40 40 H 1.09003 * 109.47420 * 299.99557 * 15 14 12 41 41 H 1.08992 * 109.47402 * 60.00233 * 15 14 12 42 42 H 0.97000 * 120.00675 * 0.02562 * 18 16 15 43 43 H 0.96997 * 119.99560 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1204 1.4558 0.1440 5 6 1.6801 2.1265 -1.3357 6 1 2.4688 2.8137 -1.6420 7 6 1.4202 1.0839 -2.4250 8 8 1.2199 1.7429 -3.6770 9 6 0.3807 2.9009 -0.9904 10 6 0.6581 3.3384 0.4695 11 7 1.3833 2.2050 1.0718 12 6 1.4348 1.9153 2.3870 13 8 2.1390 1.0062 2.7821 14 7 0.7059 2.6333 3.2643 15 6 0.7616 2.3180 4.6939 16 6 -0.1383 3.2601 5.4515 17 8 -0.7641 4.1114 4.8559 18 7 -0.2476 3.1565 6.7908 19 6 -1.0659 4.0139 7.4801 20 1 -1.6232 4.7719 6.9497 21 6 -1.1782 3.9075 8.8609 22 7 -0.5005 2.9848 9.5061 23 14 -2.2936 5.0752 9.7999 24 1 -2.9407 6.0140 8.8485 25 1 -3.3368 4.2961 10.5141 26 1 -1.4896 5.8440 10.7837 27 1 -0.3633 -1.0218 -0.1093 28 1 -0.3633 0.4163 0.9396 29 1 -0.3633 0.6056 -0.8302 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 2.2775 0.4149 -2.4995 33 1 0.5305 0.5076 -2.1713 34 1 1.0498 1.1418 -4.4151 35 1 0.2573 3.7668 -1.6411 36 1 -0.4897 2.2470 -1.0437 37 1 1.2762 4.2360 0.4856 38 1 -0.2793 3.5129 0.9977 39 1 0.1439 3.3583 2.9491 40 1 0.4293 1.2921 4.8529 41 1 1.7856 2.4276 5.0505 42 1 0.2531 2.4760 7.2672 43 1 -0.5792 2.9104 10.4700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686402648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:18 Heat of formation + Delta-G solvation = -133.631166 kcal Electronic energy + Delta-G solvation = -24925.621644 eV Core-core repulsion = 21198.051649 eV Total energy + Delta-G solvation = -3727.569995 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85599 -40.41607 -39.38235 -37.19869 -36.26205 -35.41825 -34.10657 -33.37259 -32.66553 -29.62498 -29.32895 -27.02892 -25.97728 -24.43661 -23.14819 -21.49617 -21.24809 -20.34864 -19.95691 -19.03651 -18.57161 -17.50237 -17.45647 -17.01021 -16.59789 -16.55404 -16.03753 -15.94652 -15.40930 -15.18652 -14.97196 -14.64202 -14.37604 -14.10196 -13.82051 -13.71176 -13.58961 -13.54655 -13.08424 -12.96878 -12.91564 -12.70607 -12.45400 -12.11650 -12.09131 -11.89451 -11.65934 -11.58881 -11.29535 -11.14211 -10.62042 -10.57361 -10.30767 -10.10482 -9.53632 -8.51901 -6.02169 1.34522 1.40996 1.46809 1.57775 1.87979 2.08387 2.27358 2.86157 3.14413 3.15242 3.19466 3.56105 3.65803 3.95752 4.11252 4.15714 4.19534 4.27875 4.36852 4.39945 4.43061 4.48187 4.51713 4.63522 4.70890 4.78748 4.82746 4.99751 5.05664 5.09140 5.17703 5.24677 5.30995 5.38094 5.40862 5.51610 5.91324 6.00441 6.46812 6.90454 6.98390 7.02520 7.40550 7.50428 7.92957 8.65365 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.036495 B = 0.002751 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.049356 B =10175.424011 C =10564.933111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.137 4.137 3 C 0.159 3.841 4 H 0.068 0.932 5 C -0.088 4.088 6 H 0.093 0.907 7 C 0.081 3.919 8 O -0.590 6.590 9 C -0.115 4.115 10 C 0.090 3.910 11 N -0.628 5.628 12 C 0.722 3.278 13 O -0.625 6.625 14 N -0.725 5.725 15 C 0.142 3.858 16 C 0.434 3.566 17 O -0.624 6.624 18 N -0.559 5.559 19 C -0.336 4.336 20 H 0.086 0.914 21 C -0.011 4.011 22 N -0.916 5.916 23 Si 0.998 3.002 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.271 1.271 27 H 0.060 0.940 28 H 0.025 0.975 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.398 0.602 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.407 0.593 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.399 0.601 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -4.993 -23.771 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.056 3.944 4 H 0.086 0.914 5 C -0.107 4.107 6 H 0.111 0.889 7 C 0.004 3.996 8 O -0.399 6.399 9 C -0.152 4.152 10 C -0.033 4.033 11 N -0.365 5.365 12 C 0.424 3.576 13 O -0.507 6.507 14 N -0.383 5.383 15 C 0.014 3.986 16 C 0.221 3.779 17 O -0.512 6.512 18 N -0.194 5.194 19 C -0.465 4.465 20 H 0.104 0.896 21 C -0.212 4.212 22 N -0.557 5.557 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.196 1.196 26 H -0.196 1.196 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.248 0.752 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.246 0.754 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.233 0.767 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.483 -4.626 -23.183 23.896 hybrid contribution -0.403 -0.043 0.910 0.996 sum 3.080 -4.669 -22.273 22.965 Atomic orbital electron populations 1.21991 0.95298 1.02053 1.01431 1.21954 0.96935 0.95707 1.02970 1.21437 0.96333 0.91489 0.85158 0.91427 1.22100 0.99045 0.97708 0.91864 0.88858 1.22436 1.01069 0.93170 0.82947 1.86399 1.94902 1.39573 1.19022 1.22893 0.97484 1.01460 0.93400 1.22529 0.96567 0.89127 0.95051 1.47528 1.54844 1.31031 1.03088 1.15391 0.80234 0.81627 0.80346 1.90863 1.46414 1.35011 1.78399 1.44747 1.49373 1.38470 1.05718 1.20577 0.99739 0.98135 0.80163 1.20366 0.86652 0.87708 0.83127 1.90462 1.51658 1.40433 1.68604 1.41838 1.40602 1.31594 1.05398 1.19773 1.23015 1.13366 0.90342 0.89564 1.26149 0.99000 0.99005 0.97051 1.69689 1.41826 1.33940 1.10201 0.84800 0.77672 0.77679 0.77749 1.19392 1.19593 1.19623 0.92082 0.95620 0.89982 0.88099 0.93411 0.92009 0.91309 0.75159 0.88241 0.89649 0.90566 0.90977 0.75435 0.89186 0.89158 0.76705 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.43 71.98 0.61 -2.28 16 2 C -0.14 -2.72 4.98 30.59 0.15 -2.56 16 3 C 0.16 3.31 3.24 45.34 0.15 3.46 16 4 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 5 C -0.09 -1.31 3.01 -9.60 -0.03 -1.34 16 6 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 7 C 0.08 0.88 5.07 71.98 0.36 1.24 16 8 O -0.59 -6.68 13.61 -148.98 -2.03 -8.71 16 9 C -0.11 -1.73 5.95 31.98 0.19 -1.54 16 10 C 0.09 1.82 6.68 86.85 0.58 2.40 16 11 N -0.63 -16.27 2.21 -805.90 -1.78 -18.05 16 12 C 0.72 24.76 7.75 179.05 1.39 26.15 16 13 O -0.63 -25.20 15.57 -4.01 -0.06 -25.26 16 14 N -0.73 -25.79 5.49 -482.29 -2.65 -28.43 16 15 C 0.14 5.49 6.15 85.64 0.53 6.02 16 16 C 0.43 20.52 7.85 87.66 0.69 21.21 16 17 O -0.62 -32.73 15.24 -3.06 -0.05 -32.78 16 18 N -0.56 -28.50 5.29 -306.98 -1.62 -30.12 16 19 C -0.34 -18.65 9.68 84.04 0.81 -17.83 16 20 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 21 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 22 N -0.92 -49.07 13.05 21.66 0.28 -48.78 16 23 Si 1.00 41.97 29.55 68.60 2.03 44.00 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.02 0.65 7.24 -2.38 -0.02 0.63 16 29 H 0.08 1.24 3.25 -2.39 -0.01 1.23 16 30 H 0.10 1.35 6.06 -2.38 -0.01 1.33 16 31 H 0.05 1.28 7.16 -2.39 -0.02 1.26 16 32 H 0.06 0.54 7.24 -2.39 -0.02 0.52 16 33 H 0.07 0.67 4.87 -2.39 -0.01 0.66 16 34 H 0.40 1.04 9.12 -74.06 -0.68 0.36 16 35 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.09 1.25 5.74 -2.39 -0.01 1.23 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.55 7.12 -2.39 -0.02 1.54 16 39 H 0.41 14.31 5.83 -92.71 -0.54 13.77 16 40 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 42 H 0.40 19.59 7.90 -92.71 -0.73 18.85 16 43 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -70.74 339.59 -0.85 -71.59 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -0.87 Total: 41.76 kcal Atomic # 6 Polarization: 28.89 SS G_CDS: 5.90 Total: 34.79 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -5.76 Total: -125.39 kcal Atomic # 8 Polarization: -64.61 SS G_CDS: -2.14 Total: -66.74 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -70.74 -0.85 -71.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686402648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.038 kcal (2) G-P(sol) polarization free energy of solvation -70.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds