Wall clock time and date at job start Tue Mar 31 2020 05:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50706 * 115.54603 * 2 1 4 4 O 1.21281 * 119.99372 * 214.41382 * 3 2 1 5 5 N 1.34773 * 120.00130 * 34.42277 * 3 2 1 6 6 C 1.46504 * 119.99935 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.46822 * 179.97438 * 6 5 3 8 8 H 1.09001 * 109.47362 * 304.99115 * 7 6 5 9 9 O 1.42895 * 109.47283 * 64.99978 * 7 6 5 10 10 C 1.53006 * 109.46623 * 184.99666 * 7 6 5 11 11 N 1.46902 * 109.46626 * 179.97438 * 10 7 6 12 12 C 1.46905 * 110.99800 * 180.02562 * 11 10 7 13 13 C 1.50698 * 109.47194 * 180.02562 * 12 11 10 14 14 O 1.21290 * 119.99728 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99867 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00071 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99830 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00246 * 179.97438 * 16 15 13 19 19 N 1.31417 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00115 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47027 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47041 * 120.00089 * 20 18 16 23 23 H 1.48501 * 109.47312 * 240.00031 * 20 18 16 24 24 C 1.52994 * 117.49976 * 145.66969 * 2 1 3 25 25 C 1.52995 * 117.49881 * 214.33360 * 2 1 3 26 26 H 1.09005 * 109.46669 * 85.58195 * 1 2 3 27 27 H 1.08997 * 109.46996 * 205.58287 * 1 2 3 28 28 H 1.09002 * 109.47154 * 325.58655 * 1 2 3 29 29 H 0.96995 * 120.00037 * 359.97438 * 5 3 2 30 30 H 1.08994 * 109.47386 * 59.99336 * 6 5 3 31 31 H 1.08998 * 109.46411 * 299.99658 * 6 5 3 32 32 H 0.96695 * 114.00385 * 60.00116 * 9 7 6 33 33 H 1.08993 * 109.46955 * 300.00075 * 10 7 6 34 34 H 1.09000 * 109.47050 * 59.99904 * 10 7 6 35 35 H 1.00904 * 111.00423 * 303.95194 * 11 10 7 36 36 H 1.09002 * 109.47091 * 300.00139 * 12 11 10 37 37 H 1.09001 * 109.46854 * 60.00166 * 12 11 10 38 38 H 0.96999 * 120.00108 * 0.02562 * 15 13 12 39 39 H 0.96994 * 120.00398 * 179.97438 * 19 18 16 40 40 H 1.09000 * 117.50102 * 215.00164 * 24 2 1 41 41 H 1.09001 * 117.49451 * 0.02562 * 24 2 1 42 42 H 1.08999 * 117.50264 * 359.97363 * 25 2 1 43 43 H 1.09001 * 117.50350 * 144.99825 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 3.2233 1.5331 -0.5936 5 7 1.6019 2.3829 0.6598 6 6 2.2340 3.7046 0.6602 7 6 1.3800 4.6780 1.4750 8 1 0.3623 4.6832 1.0845 9 8 1.3631 4.2666 2.8434 10 6 1.9726 6.0849 1.3728 11 7 1.1522 7.0197 2.1546 12 6 1.6920 8.3839 2.0791 13 6 0.8267 9.3122 2.8918 14 8 -0.1439 8.8798 3.4767 15 7 1.1314 10.6228 2.9685 16 6 0.3445 11.4673 3.7083 17 1 -0.5198 11.0824 4.2292 18 6 0.6588 12.8184 3.7879 19 7 1.7107 13.2868 3.1545 20 14 -0.4138 13.9692 4.7953 21 1 -1.5276 13.1999 5.4060 22 1 0.4018 14.5943 5.8674 23 1 -0.9679 15.0280 3.9137 24 6 2.2365 -1.1207 0.7653 25 6 2.2365 -1.1206 -0.7654 26 1 -0.3633 0.0792 -1.0247 27 1 -0.3633 -0.9269 0.4438 28 1 -0.3633 0.8478 0.5808 29 1 0.7674 2.2443 1.1343 30 1 2.3198 4.0667 -0.3642 31 1 3.2268 3.6322 1.1043 32 1 2.2369 4.2389 3.2566 33 1 2.9902 6.0798 1.7632 34 1 1.9855 6.3988 0.3290 35 1 0.1895 6.9950 1.8535 36 1 2.7077 8.3952 2.4746 37 1 1.7030 8.7132 1.0401 38 1 1.9073 10.9686 2.5004 39 1 1.9299 14.2300 3.2098 40 1 3.1714 -0.8746 1.2689 41 1 1.6112 -1.8582 1.2685 42 1 1.6113 -1.8582 -1.2686 43 1 3.1714 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753920366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:27 Heat of formation + Delta-G solvation = -102.086251 kcal Electronic energy + Delta-G solvation = -23358.667267 eV Core-core repulsion = 19632.465162 eV Total energy + Delta-G solvation = -3726.202105 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50602 -38.62203 -37.98377 -36.92419 -35.00580 -34.51544 -33.79177 -31.25021 -30.54956 -29.04003 -27.26641 -25.17012 -23.76985 -22.90994 -22.59367 -21.99042 -19.79064 -19.23278 -17.90626 -17.57744 -17.02503 -16.55166 -15.96536 -15.66139 -15.49030 -15.06255 -14.88976 -14.46986 -14.43999 -14.21700 -13.76578 -13.58531 -13.39452 -13.18685 -12.96196 -12.69478 -12.57867 -12.47383 -11.90129 -11.88135 -11.56700 -11.50941 -11.16245 -11.05848 -10.98765 -10.48699 -10.34599 -10.31346 -10.22762 -9.97466 -9.52497 -9.40508 -8.47039 -8.08138 -7.96484 -6.42275 -3.83122 2.18155 2.73650 3.16147 3.26746 3.34190 3.40026 3.89347 3.94927 4.17805 4.20439 4.26193 4.37312 4.40471 4.50788 4.66837 4.79083 4.92041 5.10031 5.16138 5.21145 5.23067 5.25675 5.28680 5.30809 5.41682 5.47436 5.50995 5.66187 5.73177 5.75736 5.83403 5.94176 6.07739 6.24463 7.12443 7.17706 7.50022 7.55097 7.64465 7.91353 8.06009 8.60679 9.17548 9.53692 10.05130 10.75556 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.051311 B = 0.001944 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.559577 B =14399.136696 C =14695.229437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.169 4.169 3 C 0.549 3.451 4 O -0.543 6.543 5 N -0.718 5.718 6 C 0.087 3.913 7 C 0.101 3.899 8 H 0.104 0.896 9 O -0.542 6.542 10 C 0.029 3.971 11 N -0.658 5.658 12 C 0.050 3.950 13 C 0.441 3.559 14 O -0.581 6.581 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.021 3.979 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.282 1.282 24 C -0.149 4.149 25 C -0.145 4.145 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.406 0.594 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.376 0.624 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.350 0.650 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -25.004 -8.020 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.172 4.172 3 C 0.335 3.665 4 O -0.420 6.420 5 N -0.370 5.370 6 C -0.037 4.037 7 C 0.041 3.959 8 H 0.121 0.879 9 O -0.347 6.347 10 C -0.101 4.101 11 N -0.290 5.290 12 C -0.083 4.083 13 C 0.226 3.774 14 O -0.465 6.465 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.122 0.878 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.186 4.186 25 C -0.182 4.182 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.242 0.758 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.223 0.777 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.170 0.830 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.682 -25.113 -7.564 26.282 hybrid contribution 0.077 1.282 -0.487 1.373 sum 1.760 -23.831 -8.051 25.216 Atomic orbital electron populations 1.21365 0.90294 1.02844 1.02698 1.21498 0.96050 0.89496 1.10203 1.19506 0.84198 0.84833 0.77957 1.90701 1.23374 1.83960 1.43999 1.45831 1.27757 1.09620 1.53839 1.22101 0.97250 0.82698 1.01685 1.22092 0.99928 0.91119 0.82785 0.87868 1.86622 1.34782 1.89705 1.23575 1.22570 0.98595 0.92566 0.96414 1.59961 1.06149 1.05179 1.57746 1.21696 0.99417 0.88719 0.98429 1.19785 0.87950 0.83107 0.86554 1.90534 1.30349 1.76031 1.49608 1.41871 1.27225 1.05995 1.45024 1.19763 1.08786 0.88596 1.25681 0.87841 1.25271 0.97099 0.97650 0.98001 1.69620 1.26291 1.15451 1.42992 0.85792 0.79684 0.79669 0.79147 1.19201 1.20739 1.20781 1.23119 1.02064 0.98272 0.95151 1.23047 1.02646 0.98112 0.94403 0.91508 0.91301 0.91762 0.75761 0.90481 0.90878 0.77687 0.90417 0.94395 0.83028 0.89606 0.93904 0.77474 0.91926 0.88303 0.87665 0.87884 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 9.79 37.16 0.36 -0.26 16 2 C -0.17 -1.29 2.61 -155.66 -0.41 -1.69 16 3 C 0.55 5.72 7.39 -10.98 -0.08 5.64 16 4 O -0.54 -7.68 16.26 5.56 0.09 -7.59 16 5 N -0.72 -6.22 5.40 -60.29 -0.33 -6.55 16 6 C 0.09 0.77 5.31 -4.04 -0.02 0.75 16 7 C 0.10 0.95 3.21 -26.73 -0.09 0.86 16 8 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 9 O -0.54 -5.91 13.15 -35.23 -0.46 -6.37 16 10 C 0.03 0.32 5.35 -3.82 -0.02 0.30 16 11 N -0.66 -10.26 5.99 -115.05 -0.69 -10.95 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 C 0.44 10.42 7.82 -10.99 -0.09 10.33 16 14 O -0.58 -15.91 15.78 5.55 0.09 -15.82 16 15 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 16 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 17 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 20 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.15 -0.96 9.88 -26.70 -0.26 -1.22 16 25 C -0.14 -1.01 9.77 -26.69 -0.26 -1.27 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.29 7.90 -51.93 -0.41 -0.12 16 28 H 0.06 0.32 6.39 -51.93 -0.33 -0.01 16 29 H 0.41 2.95 6.77 -40.82 -0.28 2.67 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.38 3.17 9.05 45.56 0.41 3.58 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.35 5.72 8.43 -39.29 -0.33 5.39 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.11 0.48 8.05 -51.93 -0.42 0.06 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.11 0.91 7.67 -51.93 -0.40 0.52 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -34.60 367.30 -7.07 -41.67 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -5.81 Total: 16.02 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.13 Total: 6.23 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.35 Total: -55.76 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.29 Total: -29.78 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.60 -7.07 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753920366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.412 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds