Wall clock time and date at job start Tue Mar 31 2020 05:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50706 * 115.54603 * 2 1 4 4 O 1.21281 * 119.99372 * 214.41382 * 3 2 1 5 5 N 1.34773 * 120.00130 * 34.42277 * 3 2 1 6 6 C 1.46504 * 119.99935 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.46822 * 179.97438 * 6 5 3 8 8 H 1.09001 * 109.47362 * 304.99115 * 7 6 5 9 9 O 1.42895 * 109.47283 * 64.99978 * 7 6 5 10 10 C 1.53006 * 109.46623 * 184.99666 * 7 6 5 11 11 N 1.46902 * 109.46626 * 179.97438 * 10 7 6 12 12 C 1.46905 * 110.99800 * 180.02562 * 11 10 7 13 13 C 1.50698 * 109.47194 * 180.02562 * 12 11 10 14 14 O 1.21290 * 119.99728 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99867 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00071 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99830 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00246 * 179.97438 * 16 15 13 19 19 N 1.31417 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00115 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47027 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47041 * 120.00089 * 20 18 16 23 23 H 1.48501 * 109.47312 * 240.00031 * 20 18 16 24 24 C 1.52994 * 117.49976 * 145.66969 * 2 1 3 25 25 C 1.52995 * 117.49881 * 214.33360 * 2 1 3 26 26 H 1.09005 * 109.46669 * 85.58195 * 1 2 3 27 27 H 1.08997 * 109.46996 * 205.58287 * 1 2 3 28 28 H 1.09002 * 109.47154 * 325.58655 * 1 2 3 29 29 H 0.96995 * 120.00037 * 359.97438 * 5 3 2 30 30 H 1.08994 * 109.47386 * 59.99336 * 6 5 3 31 31 H 1.08998 * 109.46411 * 299.99658 * 6 5 3 32 32 H 0.96695 * 114.00385 * 60.00116 * 9 7 6 33 33 H 1.08993 * 109.46955 * 300.00075 * 10 7 6 34 34 H 1.09000 * 109.47050 * 59.99904 * 10 7 6 35 35 H 1.00904 * 111.00423 * 303.95194 * 11 10 7 36 36 H 1.09002 * 109.47091 * 300.00139 * 12 11 10 37 37 H 1.09001 * 109.46854 * 60.00166 * 12 11 10 38 38 H 0.96999 * 120.00108 * 0.02562 * 15 13 12 39 39 H 0.96994 * 120.00398 * 179.97438 * 19 18 16 40 40 H 1.09000 * 117.50102 * 215.00164 * 24 2 1 41 41 H 1.09001 * 117.49451 * 0.02562 * 24 2 1 42 42 H 1.08999 * 117.50264 * 359.97363 * 25 2 1 43 43 H 1.09001 * 117.50350 * 144.99825 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 3.2233 1.5331 -0.5936 5 7 1.6019 2.3829 0.6598 6 6 2.2340 3.7046 0.6602 7 6 1.3800 4.6780 1.4750 8 1 0.3623 4.6832 1.0845 9 8 1.3631 4.2666 2.8434 10 6 1.9726 6.0849 1.3728 11 7 1.1522 7.0197 2.1546 12 6 1.6920 8.3839 2.0791 13 6 0.8267 9.3122 2.8918 14 8 -0.1439 8.8798 3.4767 15 7 1.1314 10.6228 2.9685 16 6 0.3445 11.4673 3.7083 17 1 -0.5198 11.0824 4.2292 18 6 0.6588 12.8184 3.7879 19 7 1.7107 13.2868 3.1545 20 14 -0.4138 13.9692 4.7953 21 1 -1.5276 13.1999 5.4060 22 1 0.4018 14.5943 5.8674 23 1 -0.9679 15.0280 3.9137 24 6 2.2365 -1.1207 0.7653 25 6 2.2365 -1.1206 -0.7654 26 1 -0.3633 0.0792 -1.0247 27 1 -0.3633 -0.9269 0.4438 28 1 -0.3633 0.8478 0.5808 29 1 0.7674 2.2443 1.1343 30 1 2.3198 4.0667 -0.3642 31 1 3.2268 3.6322 1.1043 32 1 2.2369 4.2389 3.2566 33 1 2.9902 6.0798 1.7632 34 1 1.9855 6.3988 0.3290 35 1 0.1895 6.9950 1.8535 36 1 2.7077 8.3952 2.4746 37 1 1.7030 8.7132 1.0401 38 1 1.9073 10.9686 2.5004 39 1 1.9299 14.2300 3.2098 40 1 3.1714 -0.8746 1.2689 41 1 1.6112 -1.8582 1.2685 42 1 1.6113 -1.8582 -1.2686 43 1 3.1714 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753920366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:26 Heat of formation + Delta-G solvation = -132.152776 kcal Electronic energy + Delta-G solvation = -23359.971049 eV Core-core repulsion = 19632.465162 eV Total energy + Delta-G solvation = -3727.505887 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25442 -40.19548 -39.09768 -37.61716 -36.33840 -35.69352 -35.32979 -33.27357 -31.47547 -29.64969 -28.50106 -26.68399 -25.04237 -23.52673 -23.36279 -22.81383 -21.11167 -20.46463 -19.90958 -18.36161 -18.02724 -17.47283 -17.30443 -16.72343 -16.54403 -16.39302 -16.06974 -15.86064 -15.52810 -15.15029 -15.02872 -14.85479 -14.42023 -13.99888 -13.98553 -13.53255 -13.46669 -13.39200 -13.25551 -13.18260 -12.96422 -12.70456 -12.41163 -12.40016 -12.11590 -11.96447 -11.53272 -11.51974 -11.20475 -10.96455 -10.78889 -10.33476 -10.18056 -10.02084 -9.30414 -8.47450 -5.96261 1.36477 1.41858 1.42703 1.56170 2.01426 2.04757 2.29307 2.83329 2.88162 3.19831 3.41923 3.54705 3.63800 3.73572 3.80346 3.89349 3.98399 4.04664 4.10521 4.31335 4.43544 4.50127 4.55415 4.64510 4.69479 4.71769 4.78753 4.84335 4.90682 4.96043 5.03647 5.20202 5.26895 5.33638 5.40684 5.85664 6.07952 6.35755 6.46014 6.59471 6.85485 7.12182 7.15810 7.55677 8.11126 8.70144 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.051311 B = 0.001944 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.559577 B =14399.136696 C =14695.229437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.179 4.179 3 C 0.542 3.458 4 O -0.588 6.588 5 N -0.709 5.709 6 C 0.094 3.906 7 C 0.114 3.886 8 H 0.105 0.895 9 O -0.559 6.559 10 C 0.031 3.969 11 N -0.674 5.674 12 C 0.065 3.935 13 C 0.437 3.563 14 O -0.623 6.623 15 N -0.574 5.574 16 C -0.334 4.334 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 0.994 3.006 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.270 1.270 24 C -0.139 4.139 25 C -0.148 4.148 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.414 0.586 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.385 0.615 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.344 0.656 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.606 -25.719 -8.172 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.182 4.182 3 C 0.330 3.670 4 O -0.469 6.469 5 N -0.361 5.361 6 C -0.031 4.031 7 C 0.054 3.946 8 H 0.123 0.877 9 O -0.365 6.365 10 C -0.099 4.099 11 N -0.306 5.306 12 C -0.068 4.068 13 C 0.224 3.776 14 O -0.510 6.510 15 N -0.211 5.211 16 C -0.463 4.463 17 H 0.097 0.903 18 C -0.214 4.214 19 N -0.562 5.562 20 Si 0.817 3.183 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.195 1.195 24 C -0.177 4.177 25 C -0.186 4.186 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.252 0.748 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.234 0.766 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.162 0.838 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.450 -25.833 -7.718 27.000 hybrid contribution 0.184 1.457 -0.448 1.535 sum 1.635 -24.376 -8.167 25.760 Atomic orbital electron populations 1.21390 0.88411 1.03980 1.03070 1.21583 0.97310 0.88057 1.11224 1.20052 0.83711 0.86045 0.77205 1.90675 1.25387 1.84807 1.45988 1.45795 1.27809 1.09315 1.53176 1.21991 0.97020 0.82641 1.01417 1.21959 0.99984 0.90329 0.82336 0.87683 1.86598 1.35904 1.89747 1.24286 1.22659 0.98365 0.92117 0.96774 1.59952 1.06372 1.04767 1.59510 1.21550 0.98505 0.88311 0.98395 1.20913 0.87754 0.83111 0.85797 1.90500 1.32406 1.76742 1.51306 1.41944 1.27273 1.06667 1.45234 1.19709 1.09297 0.89905 1.27428 0.90348 1.26052 0.98219 0.98455 0.98626 1.69676 1.26993 1.16155 1.43329 0.84859 0.77900 0.77574 0.77924 1.19809 1.19625 1.19546 1.23209 1.01764 0.97907 0.94790 1.23091 1.02104 0.98402 0.94966 0.91409 0.89510 0.91421 0.74780 0.90581 0.91026 0.76556 0.89320 0.92742 0.83777 0.87746 0.91485 0.76954 0.91296 0.89477 0.85155 0.85682 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.79 71.98 0.70 -0.27 16 2 C -0.18 -2.50 2.61 -52.93 -0.14 -2.64 16 3 C 0.54 11.07 7.39 87.66 0.65 11.71 16 4 O -0.59 -16.88 16.26 -3.03 -0.05 -16.93 16 5 N -0.71 -11.57 5.40 -463.06 -2.50 -14.07 16 6 C 0.09 1.54 5.31 86.38 0.46 2.00 16 7 C 0.11 1.96 3.21 30.60 0.10 2.06 16 8 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 9 O -0.56 -11.41 13.15 -148.98 -1.96 -13.37 16 10 C 0.03 0.60 5.35 86.31 0.46 1.07 16 11 N -0.67 -20.08 5.99 -517.91 -3.10 -23.18 16 12 C 0.06 2.14 6.17 85.56 0.53 2.67 16 13 C 0.44 20.73 7.82 87.66 0.69 21.42 16 14 O -0.62 -34.77 15.78 -3.06 -0.05 -34.82 16 15 N -0.57 -29.46 5.29 -306.99 -1.62 -31.09 16 16 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 17 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 18 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 19 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 20 Si 0.99 43.02 29.55 68.60 2.03 45.04 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 C -0.14 -1.59 9.88 30.62 0.30 -1.29 16 25 C -0.15 -1.94 9.77 30.62 0.30 -1.64 16 26 H 0.07 0.58 8.14 -2.38 -0.02 0.57 16 27 H 0.09 0.46 7.90 -2.39 -0.02 0.44 16 28 H 0.07 0.53 6.39 -2.39 -0.02 0.52 16 29 H 0.41 5.41 6.77 -92.71 -0.63 4.79 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.39 5.97 9.05 -74.06 -0.67 5.30 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.34 10.96 8.43 -89.69 -0.76 10.21 16 36 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 38 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 39 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.13 0.82 8.05 -2.39 -0.02 0.80 16 42 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 1.51 7.67 -2.39 -0.02 1.49 16 Total: -1.00 -75.56 367.30 -3.37 -78.93 By element: Atomic # 1 Polarization: 44.01 SS G_CDS: -1.72 Total: 42.29 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 5.33 Total: 16.58 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -6.94 Total: -117.73 kcal Atomic # 8 Polarization: -63.05 SS G_CDS: -2.06 Total: -65.11 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -75.56 -3.37 -78.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753920366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.225 kcal (2) G-P(sol) polarization free energy of solvation -75.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds