Wall clock time and date at job start Tue Mar 31 2020 05:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 110.43415 * 2 1 4 4 O 1.21276 * 120.00232 * 235.46867 * 3 2 1 5 5 N 1.34788 * 120.00006 * 55.46715 * 3 2 1 6 6 C 1.46496 * 119.99573 * 3.80581 * 5 3 2 7 7 C 1.53006 * 109.47108 * 244.02354 * 6 5 3 8 8 O 1.42905 * 109.46511 * 58.63499 * 7 6 5 9 9 C 1.46499 * 119.99749 * 183.80694 * 5 3 2 10 10 C 1.52999 * 109.47138 * 265.34195 * 9 5 3 11 11 N 1.46492 * 109.47326 * 184.92153 * 10 9 5 12 12 C 1.36941 * 120.00299 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99672 * 0.02562 * 12 11 10 14 14 C 1.38809 * 120.00206 * 179.97438 * 12 11 10 15 15 N 1.31618 * 120.00185 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00167 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46932 * 89.99914 * 16 14 12 18 18 H 1.48497 * 109.47378 * 210.00302 * 16 14 12 19 19 H 1.48506 * 109.46921 * 330.00106 * 16 14 12 20 20 C 1.54619 * 110.59892 * 237.38313 * 2 1 3 21 21 C 1.54479 * 101.76297 * 216.46689 * 20 2 1 22 22 N 1.46765 * 105.47183 * 25.41626 * 21 20 2 23 23 C 1.34418 * 111.30177 * 342.98332 * 22 21 20 24 24 O 1.21273 * 124.93873 * 180.44227 * 23 22 21 25 25 H 1.09004 * 109.47108 * 60.71431 * 1 2 3 26 26 H 1.09000 * 109.47267 * 180.71539 * 1 2 3 27 27 H 1.09004 * 109.47233 * 300.71961 * 1 2 3 28 28 H 1.09007 * 109.46678 * 124.03204 * 6 5 3 29 29 H 1.08997 * 109.47491 * 4.02927 * 6 5 3 30 30 H 1.09000 * 109.47299 * 298.63808 * 7 6 5 31 31 H 1.09001 * 109.47122 * 178.63054 * 7 6 5 32 32 H 0.96702 * 113.99361 * 179.97438 * 8 7 6 33 33 H 1.08997 * 109.47229 * 25.34253 * 9 5 3 34 34 H 1.09002 * 109.46643 * 145.34576 * 9 5 3 35 35 H 1.09008 * 109.46703 * 304.92112 * 10 9 5 36 36 H 1.08996 * 109.47114 * 64.91732 * 10 9 5 37 37 H 0.97002 * 120.00213 * 359.97438 * 11 10 9 38 38 H 0.96991 * 120.00483 * 180.02562 * 15 14 12 39 39 H 1.09001 * 110.97025 * 334.58410 * 20 2 1 40 40 H 1.08998 * 110.97250 * 98.35388 * 20 2 1 41 41 H 1.08995 * 110.25059 * 266.41577 * 21 20 2 42 42 H 1.09004 * 110.31772 * 144.45290 * 21 20 2 43 43 H 0.97001 * 124.34801 * 162.95905 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.8258 1.7726 -0.8652 5 7 1.6714 2.2747 0.9616 6 6 0.8084 1.8171 2.0533 7 6 -0.5333 2.5494 1.9840 8 8 -1.1480 2.2984 0.7186 9 6 2.1163 3.6697 0.9150 10 6 3.3737 3.8330 1.7713 11 7 3.7510 5.2476 1.8201 12 6 4.8528 5.6382 2.5334 13 1 5.4438 4.9032 3.0596 14 6 5.2106 6.9786 2.5792 15 7 6.2699 7.3539 3.2644 16 14 4.1897 8.2496 1.6673 17 1 3.1207 8.7607 2.5625 18 1 5.0619 9.3749 1.2451 19 1 3.5748 7.6236 0.4693 20 6 2.0741 -0.7801 -1.2191 21 6 3.3233 -1.4655 -0.6225 22 7 3.0582 -1.5785 0.8166 23 6 2.0594 -0.7622 1.1947 24 8 1.6437 -0.6524 2.3287 25 1 -0.3633 0.5027 -0.8964 26 1 -0.3634 -1.0276 0.0128 27 1 -0.3634 0.5250 0.8835 28 1 1.2885 2.0282 3.0089 29 1 0.6419 0.7440 1.9595 30 1 -0.3692 3.6205 2.1021 31 1 -1.1843 2.1913 2.7816 32 1 -2.0046 2.7324 0.6046 33 1 2.3402 3.9454 -0.1155 34 1 1.3276 4.3157 1.3008 35 1 3.1743 3.4750 2.7814 36 1 4.1880 3.2546 1.3350 37 1 3.2204 5.9077 1.3472 38 1 6.5198 8.2906 3.2967 39 1 1.3508 -1.5192 -1.5636 40 1 2.3497 -0.1008 -2.0256 41 1 4.2084 -0.8536 -0.7960 42 1 3.4576 -2.4548 -1.0601 43 1 3.5415 -2.1669 1.4176 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754890871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:34 Heat of formation + Delta-G solvation = -71.684066 kcal Electronic energy + Delta-G solvation = -26139.564699 eV Core-core repulsion = 22414.680932 eV Total energy + Delta-G solvation = -3724.883767 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67843 -39.07549 -37.58276 -36.59282 -35.62409 -34.47325 -33.31897 -31.45195 -29.54743 -29.11280 -27.87923 -25.61486 -24.04679 -23.00962 -22.27692 -21.56042 -20.76765 -18.69619 -17.84128 -17.72984 -17.62109 -17.46277 -16.05122 -15.88554 -15.13795 -14.82846 -14.62474 -14.37365 -14.23134 -13.92245 -13.88010 -13.66541 -13.62143 -13.12851 -12.78538 -12.64795 -12.46054 -12.30001 -12.15349 -11.66204 -11.52288 -11.45704 -11.15395 -11.10526 -11.00313 -10.70575 -10.19437 -10.13832 -9.70148 -9.57662 -9.50446 -9.37658 -8.86932 -8.49759 -7.21640 -5.73832 -3.09906 2.13409 2.62295 3.00548 3.14090 3.39734 3.42727 3.47365 3.98419 4.11269 4.14691 4.36062 4.61836 4.64693 4.80301 5.03536 5.08797 5.11793 5.23901 5.31104 5.45986 5.51515 5.55501 5.58554 5.62886 5.65946 5.70355 5.80076 5.81701 5.92809 6.02125 6.24867 6.42991 6.54915 6.67635 6.70592 6.84754 7.45646 7.48603 7.90327 8.01577 8.20288 8.44535 9.23114 9.95218 10.14947 11.44638 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.018587 B = 0.004299 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.092829 B = 6512.238555 C = 7112.394430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.539 3.461 4 O -0.530 6.530 5 N -0.585 5.585 6 C 0.062 3.938 7 C 0.054 3.946 8 O -0.562 6.562 9 C 0.104 3.896 10 C 0.146 3.854 11 N -0.753 5.753 12 C -0.242 4.242 13 H 0.089 0.911 14 C 0.005 3.995 15 N -0.935 5.935 16 Si 0.885 3.115 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.276 1.276 20 C -0.117 4.117 21 C 0.098 3.902 22 N -0.724 5.724 23 C 0.532 3.468 24 O -0.515 6.515 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.144 0.856 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.372 0.628 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.027 0.973 36 H 0.029 0.971 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.398 -19.969 -8.099 27.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C 0.325 3.675 4 O -0.406 6.406 5 N -0.316 5.316 6 C -0.060 4.060 7 C -0.024 4.024 8 O -0.368 6.368 9 C -0.018 4.018 10 C 0.018 3.982 11 N -0.399 5.399 12 C -0.372 4.372 13 H 0.107 0.893 14 C -0.191 4.191 15 N -0.583 5.583 16 Si 0.715 3.285 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.203 1.203 20 C -0.155 4.155 21 C -0.027 4.027 22 N -0.378 5.378 23 C 0.317 3.683 24 O -0.392 6.392 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.124 0.876 28 H 0.104 0.896 29 H 0.160 0.840 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -15.494 -19.995 -7.981 26.525 hybrid contribution -0.796 1.194 -0.125 1.440 sum -16.290 -18.802 -8.105 26.164 Atomic orbital electron populations 1.22245 0.88730 1.02548 1.06401 1.21639 1.00245 0.94158 0.96496 1.19607 0.80653 0.85771 0.81505 1.90704 1.34648 1.77794 1.37491 1.47560 1.48831 1.10363 1.24856 1.22953 0.88171 1.04241 0.90652 1.22631 0.94465 0.99700 0.85624 1.86598 1.38609 1.75275 1.36278 1.21713 0.97214 0.80497 1.02401 1.20879 0.93701 0.86961 0.96627 1.42562 1.33090 1.02300 1.61953 1.19043 1.01919 0.93305 1.22942 0.89271 1.24660 0.97698 0.96713 1.00037 1.69700 1.26929 1.16077 1.45571 0.86530 0.79975 0.82034 0.79935 1.21063 1.21643 1.20257 1.22696 0.96452 0.99281 0.97045 1.22186 0.99191 1.01701 0.79575 1.46122 1.36735 1.43714 1.11268 1.20391 0.79554 0.79451 0.88909 1.90634 1.61210 1.65787 1.21528 0.90738 0.92278 0.87599 0.89604 0.83974 0.93129 0.92470 0.78048 0.89626 0.90742 0.95523 0.95258 0.80702 0.93051 0.89280 0.87295 0.90124 0.89781 0.74708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 6.93 37.16 0.26 -1.17 16 2 C -0.12 -1.39 0.56 -155.67 -0.09 -1.48 16 3 C 0.54 8.39 6.54 -10.98 -0.07 8.32 16 4 O -0.53 -9.77 15.03 5.56 0.08 -9.69 16 5 N -0.58 -9.00 2.42 -173.69 -0.42 -9.42 16 6 C 0.06 0.81 4.67 -4.04 -0.02 0.79 16 7 C 0.05 0.55 6.80 37.16 0.25 0.80 16 8 O -0.56 -5.19 10.41 -35.23 -0.37 -5.56 16 9 C 0.10 1.83 5.45 -4.04 -0.02 1.81 16 10 C 0.15 3.15 6.58 -4.05 -0.03 3.13 16 11 N -0.75 -19.03 5.41 -59.91 -0.32 -19.35 16 12 C -0.24 -7.20 10.47 -15.06 -0.16 -7.36 16 13 H 0.09 2.85 8.06 -52.49 -0.42 2.42 16 14 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 15 N -0.93 -30.14 13.97 55.49 0.78 -29.37 16 16 Si 0.89 22.64 27.73 -169.99 -4.71 17.93 16 17 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 19 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 20 C -0.12 -1.05 6.01 -25.10 -0.15 -1.20 16 21 C 0.10 0.79 7.78 -3.12 -0.02 0.76 16 22 N -0.72 -6.96 6.24 -59.20 -0.37 -7.33 16 23 C 0.53 6.61 6.87 -10.86 -0.07 6.54 16 24 O -0.51 -7.50 14.60 5.56 0.08 -7.42 16 25 H 0.07 0.74 7.98 -51.93 -0.41 0.33 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.11 1.15 2.65 -51.93 -0.14 1.01 16 28 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 29 H 0.14 1.85 1.73 -52.53 -0.09 1.75 16 30 H 0.05 0.54 6.88 -51.93 -0.36 0.18 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.37 1.91 9.12 45.56 0.42 2.33 16 33 H 0.09 1.61 7.34 -51.93 -0.38 1.23 16 34 H 0.07 1.18 6.68 -51.93 -0.35 0.83 16 35 H 0.03 0.58 8.10 -51.92 -0.42 0.16 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.36 8.74 5.53 -40.82 -0.23 8.51 16 38 H 0.26 7.92 8.31 -40.82 -0.34 7.59 16 39 H 0.09 0.57 7.92 -51.93 -0.41 0.16 16 40 H 0.11 1.10 6.99 -51.93 -0.36 0.74 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.41 3.20 8.96 -40.82 -0.37 2.84 16 LS Contribution 335.78 15.07 5.06 5.06 Total: -1.00 -37.11 335.78 -5.64 -42.75 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -5.22 Total: 11.42 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -0.22 Total: 10.98 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: -0.34 Total: -65.47 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.20 Total: -22.67 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.71 Total: 17.93 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.11 -5.64 -42.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754890871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.932 kcal (2) G-P(sol) polarization free energy of solvation -37.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds