Wall clock time and date at job start Tue Mar 31 2020 05:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 110.43415 * 2 1 4 4 O 1.21276 * 120.00232 * 235.46867 * 3 2 1 5 5 N 1.34788 * 120.00006 * 55.46715 * 3 2 1 6 6 C 1.46496 * 119.99573 * 3.80581 * 5 3 2 7 7 C 1.53006 * 109.47108 * 244.02354 * 6 5 3 8 8 O 1.42905 * 109.46511 * 58.63499 * 7 6 5 9 9 C 1.46499 * 119.99749 * 183.80694 * 5 3 2 10 10 C 1.52999 * 109.47138 * 265.34195 * 9 5 3 11 11 N 1.46492 * 109.47326 * 184.92153 * 10 9 5 12 12 C 1.36941 * 120.00299 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99672 * 0.02562 * 12 11 10 14 14 C 1.38809 * 120.00206 * 179.97438 * 12 11 10 15 15 N 1.31618 * 120.00185 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00167 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46932 * 89.99914 * 16 14 12 18 18 H 1.48497 * 109.47378 * 210.00302 * 16 14 12 19 19 H 1.48506 * 109.46921 * 330.00106 * 16 14 12 20 20 C 1.54619 * 110.59892 * 237.38313 * 2 1 3 21 21 C 1.54479 * 101.76297 * 216.46689 * 20 2 1 22 22 N 1.46765 * 105.47183 * 25.41626 * 21 20 2 23 23 C 1.34418 * 111.30177 * 342.98332 * 22 21 20 24 24 O 1.21273 * 124.93873 * 180.44227 * 23 22 21 25 25 H 1.09004 * 109.47108 * 60.71431 * 1 2 3 26 26 H 1.09000 * 109.47267 * 180.71539 * 1 2 3 27 27 H 1.09004 * 109.47233 * 300.71961 * 1 2 3 28 28 H 1.09007 * 109.46678 * 124.03204 * 6 5 3 29 29 H 1.08997 * 109.47491 * 4.02927 * 6 5 3 30 30 H 1.09000 * 109.47299 * 298.63808 * 7 6 5 31 31 H 1.09001 * 109.47122 * 178.63054 * 7 6 5 32 32 H 0.96702 * 113.99361 * 179.97438 * 8 7 6 33 33 H 1.08997 * 109.47229 * 25.34253 * 9 5 3 34 34 H 1.09002 * 109.46643 * 145.34576 * 9 5 3 35 35 H 1.09008 * 109.46703 * 304.92112 * 10 9 5 36 36 H 1.08996 * 109.47114 * 64.91732 * 10 9 5 37 37 H 0.97002 * 120.00213 * 359.97438 * 11 10 9 38 38 H 0.96991 * 120.00483 * 180.02562 * 15 14 12 39 39 H 1.09001 * 110.97025 * 334.58410 * 20 2 1 40 40 H 1.08998 * 110.97250 * 98.35388 * 20 2 1 41 41 H 1.08995 * 110.25059 * 266.41577 * 21 20 2 42 42 H 1.09004 * 110.31772 * 144.45290 * 21 20 2 43 43 H 0.97001 * 124.34801 * 162.95905 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.8258 1.7726 -0.8652 5 7 1.6714 2.2747 0.9616 6 6 0.8084 1.8171 2.0533 7 6 -0.5333 2.5494 1.9840 8 8 -1.1480 2.2984 0.7186 9 6 2.1163 3.6697 0.9150 10 6 3.3737 3.8330 1.7713 11 7 3.7510 5.2476 1.8201 12 6 4.8528 5.6382 2.5334 13 1 5.4438 4.9032 3.0596 14 6 5.2106 6.9786 2.5792 15 7 6.2699 7.3539 3.2644 16 14 4.1897 8.2496 1.6673 17 1 3.1207 8.7607 2.5625 18 1 5.0619 9.3749 1.2451 19 1 3.5748 7.6236 0.4693 20 6 2.0741 -0.7801 -1.2191 21 6 3.3233 -1.4655 -0.6225 22 7 3.0582 -1.5785 0.8166 23 6 2.0594 -0.7622 1.1947 24 8 1.6437 -0.6524 2.3287 25 1 -0.3633 0.5027 -0.8964 26 1 -0.3634 -1.0276 0.0128 27 1 -0.3634 0.5250 0.8835 28 1 1.2885 2.0282 3.0089 29 1 0.6419 0.7440 1.9595 30 1 -0.3692 3.6205 2.1021 31 1 -1.1843 2.1913 2.7816 32 1 -2.0046 2.7324 0.6046 33 1 2.3402 3.9454 -0.1155 34 1 1.3276 4.3157 1.3008 35 1 3.1743 3.4750 2.7814 36 1 4.1880 3.2546 1.3350 37 1 3.2204 5.9077 1.3472 38 1 6.5198 8.2906 3.2967 39 1 1.3508 -1.5192 -1.5636 40 1 2.3497 -0.1008 -2.0256 41 1 4.2084 -0.8536 -0.7960 42 1 3.4576 -2.4548 -1.0601 43 1 3.5415 -2.1669 1.4176 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754890871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:33 Heat of formation + Delta-G solvation = -103.970445 kcal Electronic energy + Delta-G solvation = -26140.964741 eV Core-core repulsion = 22414.680932 eV Total energy + Delta-G solvation = -3726.283809 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.65704 -40.18865 -38.55313 -37.49181 -37.18953 -35.91308 -34.42970 -33.48221 -30.83562 -29.96398 -29.25230 -26.49874 -25.74251 -23.96936 -23.72462 -22.85971 -21.97194 -20.05165 -19.42629 -18.75204 -18.55989 -18.45734 -17.35051 -16.93195 -16.48948 -16.15510 -15.97840 -15.60316 -15.41893 -15.25182 -14.99609 -14.86684 -14.75951 -14.65681 -14.21596 -13.59426 -13.56632 -13.29194 -13.18432 -13.07949 -12.98337 -12.85006 -12.42474 -12.34647 -12.27759 -12.15914 -11.92519 -11.87238 -11.06270 -10.97320 -10.85934 -10.41055 -10.18717 -9.76742 -9.42637 -8.08783 -5.45749 1.11308 1.35318 1.40281 1.47664 1.50689 1.88270 2.30430 2.44431 3.13360 3.21543 3.25877 3.38296 3.50295 3.64589 3.86954 4.01254 4.05544 4.10164 4.23231 4.29526 4.38989 4.40362 4.59612 4.69473 4.70649 4.82469 4.85803 4.91217 4.93107 4.98573 5.05095 5.10659 5.37477 5.52282 5.65075 5.66874 5.87624 6.13527 6.28020 6.96406 6.98734 7.01390 7.04875 7.70377 7.93790 9.12652 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.018587 B = 0.004299 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.092829 B = 6512.238555 C = 7112.394430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.117 4.117 3 C 0.529 3.471 4 O -0.567 6.567 5 N -0.586 5.586 6 C 0.055 3.945 7 C 0.063 3.937 8 O -0.571 6.571 9 C 0.118 3.882 10 C 0.152 3.848 11 N -0.751 5.751 12 C -0.247 4.247 13 H 0.049 0.951 14 C -0.059 4.059 15 N -0.982 5.982 16 Si 0.962 3.038 17 H -0.269 1.269 18 H -0.291 1.291 19 H -0.253 1.253 20 C -0.113 4.113 21 C 0.096 3.904 22 N -0.715 5.715 23 C 0.522 3.478 24 O -0.543 6.543 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.149 0.851 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.392 0.608 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.025 0.975 36 H 0.002 0.998 37 H 0.369 0.631 38 H 0.261 0.739 39 H 0.123 0.877 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.125 0.875 43 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.162 -20.749 -9.551 29.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 C 0.317 3.683 4 O -0.446 6.446 5 N -0.316 5.316 6 C -0.066 4.066 7 C -0.016 4.016 8 O -0.380 6.380 9 C -0.005 4.005 10 C 0.024 3.976 11 N -0.398 5.398 12 C -0.378 4.378 13 H 0.067 0.933 14 C -0.251 4.251 15 N -0.631 5.631 16 Si 0.788 3.212 17 H -0.194 1.194 18 H -0.218 1.218 19 H -0.177 1.177 20 C -0.151 4.151 21 C -0.028 4.028 22 N -0.369 5.369 23 C 0.307 3.693 24 O -0.422 6.422 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.090 0.910 29 H 0.165 0.835 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.243 0.757 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.043 0.957 36 H 0.020 0.980 37 H 0.203 0.797 38 H 0.070 0.930 39 H 0.141 0.859 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.143 0.857 43 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -18.298 -20.829 -9.446 29.290 hybrid contribution 0.156 1.335 0.372 1.394 sum -18.142 -19.495 -9.075 28.134 Atomic orbital electron populations 1.22229 0.87191 1.03878 1.06102 1.21691 1.01448 0.91589 0.97605 1.20367 0.79925 0.87250 0.80785 1.90679 1.36184 1.78826 1.38901 1.47660 1.48957 1.09462 1.25545 1.23130 0.89281 1.05100 0.89089 1.22463 0.93289 0.98938 0.86861 1.86545 1.40010 1.75721 1.35700 1.21404 0.95787 0.82652 1.00677 1.20885 0.94875 0.84652 0.97143 1.42458 1.31985 1.03962 1.61390 1.18963 1.02833 0.92914 1.23053 0.93308 1.25580 0.99166 0.99100 1.01220 1.69890 1.29104 1.16752 1.47381 0.85319 0.78295 0.78348 0.79286 1.19409 1.21772 1.17745 1.22785 0.97405 0.99429 0.95487 1.22352 0.98167 1.03626 0.78641 1.46173 1.35645 1.42831 1.12240 1.20597 0.80157 0.79868 0.88680 1.90612 1.62317 1.66786 1.22473 0.90563 0.90114 0.88302 0.91048 0.83479 0.93483 0.90035 0.75748 0.90771 0.88428 0.95738 0.98007 0.79679 0.92993 0.85861 0.88578 0.91828 0.85671 0.73697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 6.93 71.98 0.50 -1.93 16 2 C -0.12 -2.58 0.56 -52.94 -0.03 -2.61 16 3 C 0.53 16.38 6.54 87.66 0.57 16.95 16 4 O -0.57 -21.23 15.03 -3.02 -0.05 -21.27 16 5 N -0.59 -17.85 2.42 -821.80 -1.99 -19.84 16 6 C 0.06 1.40 4.67 86.38 0.40 1.80 16 7 C 0.06 1.14 6.80 71.98 0.49 1.63 16 8 O -0.57 -9.07 10.41 -148.98 -1.55 -10.62 16 9 C 0.12 4.10 5.45 86.38 0.47 4.57 16 10 C 0.15 6.70 6.58 86.38 0.57 7.27 16 11 N -0.75 -38.12 5.41 -343.47 -1.86 -39.98 16 12 C -0.25 -15.08 10.47 84.03 0.88 -14.20 16 13 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 14 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 15 N -0.98 -64.73 13.97 21.65 0.30 -64.43 16 16 Si 0.96 46.38 27.73 68.60 1.90 48.28 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 19 H -0.25 -11.12 6.52 99.48 0.65 -10.47 16 20 C -0.11 -1.79 6.01 31.65 0.19 -1.60 16 21 C 0.10 1.36 7.78 86.83 0.68 2.03 16 22 N -0.71 -12.74 6.24 -459.82 -2.87 -15.61 16 23 C 0.52 12.44 6.87 87.90 0.60 13.05 16 24 O -0.54 -15.54 14.60 -3.01 -0.04 -15.58 16 25 H 0.08 1.33 7.98 -2.38 -0.02 1.31 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.10 1.93 2.65 -2.39 -0.01 1.92 16 28 H 0.07 1.98 8.10 -2.38 -0.02 1.97 16 29 H 0.15 3.68 1.73 -11.81 -0.02 3.66 16 30 H 0.05 0.89 6.88 -2.39 -0.02 0.87 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.39 2.81 9.12 -74.06 -0.68 2.14 16 33 H 0.07 2.77 7.34 -2.39 -0.02 2.75 16 34 H 0.10 2.93 6.68 -2.39 -0.02 2.92 16 35 H 0.02 1.10 8.10 -2.38 -0.02 1.08 16 36 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.37 17.36 5.53 -92.71 -0.51 16.85 16 38 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 39 H 0.12 1.10 7.92 -2.39 -0.02 1.08 16 40 H 0.10 1.83 6.99 -2.39 -0.02 1.82 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.13 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.42 5.99 8.96 -92.71 -0.83 5.15 16 Total: -1.00 -82.92 335.78 -1.38 -84.30 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -1.02 Total: 30.92 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 5.79 Total: 23.84 kcal Atomic # 7 Polarization: -133.44 SS G_CDS: -6.41 Total: -139.86 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -1.64 Total: -47.47 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.90 Total: 48.28 kcal Total: -82.92 -1.38 -84.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754890871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.673 kcal (2) G-P(sol) polarization free energy of solvation -82.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds