Wall clock time and date at job start Tue Mar 31 2020 03:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39805 * 120.07378 * 290.64268 * 3 2 1 5 5 C 1.37653 * 119.92468 * 179.97438 * 4 3 2 6 6 C 1.39179 * 120.07400 * 359.97438 * 5 4 3 7 7 N 1.39186 * 119.92514 * 180.02562 * 6 5 4 8 8 C 1.48057 * 111.00034 * 89.58653 * 7 6 5 9 9 C 1.53699 * 112.47210 * 192.19705 * 8 7 6 10 10 C 1.50799 * 112.10210 * 318.55681 * 9 8 7 11 11 N 1.47908 * 108.50257 * 92.54484 * 10 9 8 12 12 C 1.46897 * 111.00067 * 153.78867 * 11 10 9 13 13 C 1.52997 * 109.47263 * 194.01878 * 12 11 10 14 14 C 1.50700 * 109.47379 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99284 * 359.97438 * 14 13 12 16 16 C 1.37870 * 119.99944 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99552 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00359 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46864 * 90.00230 * 18 16 14 20 20 H 1.48503 * 109.47201 * 210.00155 * 18 16 14 21 21 H 1.48496 * 109.46970 * 330.00420 * 18 16 14 22 22 C 1.40011 * 114.06660 * 280.08456 * 11 10 9 23 23 C 1.44573 * 111.00000 * 321.89917 * 7 6 5 24 24 C 1.39176 * 120.15047 * 0.29058 * 6 5 4 25 25 C 1.37658 * 120.07581 * 359.45329 * 24 6 5 26 26 H 1.08005 * 120.04238 * 359.96459 * 4 3 2 27 27 H 1.07997 * 119.96529 * 180.02562 * 5 4 3 28 28 H 1.09006 * 108.88626 * 312.96848 * 8 7 6 29 29 H 1.08997 * 108.88282 * 71.52605 * 8 7 6 30 30 H 1.09000 * 108.95257 * 79.22818 * 9 8 7 31 31 H 1.09002 * 108.95596 * 197.87300 * 9 8 7 32 32 H 1.09000 * 109.62906 * 332.84296 * 10 9 8 33 33 H 1.08997 * 109.63188 * 212.25573 * 10 9 8 34 34 H 1.09000 * 109.46551 * 74.01698 * 12 11 10 35 35 H 1.08995 * 109.47151 * 314.02153 * 12 11 10 36 36 H 1.09000 * 109.47278 * 59.99634 * 13 12 11 37 37 H 1.09008 * 109.46662 * 300.00188 * 13 12 11 38 38 H 0.97002 * 119.99728 * 179.97438 * 17 16 14 39 39 H 1.08998 * 108.95626 * 182.47752 * 22 11 10 40 40 H 1.08999 * 108.95681 * 301.12973 * 22 11 10 41 41 H 1.09000 * 109.57862 * 100.53892 * 23 7 6 42 42 H 1.09006 * 109.68009 * 340.22077 * 23 7 6 43 43 H 1.07997 * 119.96577 * 179.72357 * 24 6 5 44 44 H 1.07994 * 120.04125 * 180.29203 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2688 -0.4256 1.1322 5 6 4.6454 -0.4242 1.1286 6 6 5.3395 0.0004 -0.0005 7 7 6.7313 0.0000 -0.0009 8 6 7.2615 -1.2974 -0.4784 9 6 8.7680 -1.4492 -0.2149 10 6 9.5253 -0.1772 -0.5018 11 7 9.6239 0.6032 0.7508 12 6 10.8035 1.4785 0.7343 13 6 11.0726 1.9983 2.1479 14 6 12.2824 2.8967 2.1309 15 1 12.8071 3.0783 1.2046 16 6 12.7193 3.4867 3.2979 17 7 13.7755 4.2704 3.2831 18 14 11.8113 3.1732 4.8999 19 1 12.3939 1.9855 5.5747 20 1 11.9432 4.3591 5.7839 21 1 10.3752 2.9256 4.6146 22 6 8.4669 1.3262 1.0656 23 6 7.2499 0.4053 1.2863 24 6 4.6450 0.4305 -1.1274 25 6 3.2685 0.4267 -1.1325 26 1 2.7309 -0.7554 2.0087 27 1 5.1874 -0.7537 2.0027 28 1 6.7315 -2.1034 0.0292 29 1 7.0825 -1.3785 -1.5506 30 1 8.9189 -1.7232 0.8293 31 1 9.1598 -2.2452 -0.8481 32 1 8.9927 0.4042 -1.2545 33 1 10.5251 -0.4195 -0.8621 34 1 10.6220 2.3202 0.0660 35 1 11.6685 0.9158 0.3833 36 1 11.2540 1.1566 2.8162 37 1 10.2075 2.5610 2.4988 38 1 14.0826 4.6858 4.1041 39 1 8.6452 1.9015 1.9741 40 1 8.2467 2.0147 0.2499 41 1 7.5561 -0.4755 1.8506 42 1 6.4801 0.9438 1.8392 43 1 5.1867 0.7635 -2.0003 44 1 2.7302 0.7561 -2.0088 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051851554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:27 Heat of formation + Delta-G solvation = 76.197010 kcal Electronic energy + Delta-G solvation = -23482.292997 eV Core-core repulsion = 20206.963849 eV Total energy + Delta-G solvation = -3275.329148 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68202 -38.89202 -37.07177 -35.91085 -33.36898 -32.56906 -31.59097 -30.84925 -30.00737 -27.44619 -25.98474 -24.26996 -23.25846 -23.02320 -21.01012 -20.23144 -19.74642 -19.21902 -17.45004 -16.81245 -16.09665 -15.86128 -15.19060 -14.98020 -14.87726 -14.43919 -14.30394 -14.14211 -13.91821 -13.83857 -13.53533 -13.13280 -12.98845 -12.88245 -12.56376 -12.36151 -12.24503 -11.96597 -11.66066 -11.44532 -11.26493 -11.15687 -11.02166 -10.86405 -10.62492 -10.10795 -9.74749 -9.64855 -9.45272 -9.36345 -9.19542 -8.53083 -8.34011 -7.72258 -6.04676 -4.02680 0.36188 0.95457 2.33959 2.56236 3.31613 3.38795 3.40888 3.42356 3.50669 3.60256 4.33127 4.44926 4.45382 4.46344 4.75669 4.87597 4.90597 5.04392 5.07955 5.18561 5.27177 5.30238 5.34518 5.47648 5.55821 5.60511 5.64110 5.68947 5.83619 5.90977 5.97474 6.00508 6.09854 6.18578 6.25211 6.27229 6.34567 6.44920 6.77776 6.81464 7.10890 7.16032 7.17416 7.38743 7.65114 7.79572 7.93910 8.53078 8.99786 9.57847 11.08750 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.021175 B = 0.002965 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.984780 B = 9440.795731 C =10226.454094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.259 3.741 3 C -0.051 4.051 4 C -0.053 4.053 5 C -0.161 4.161 6 C 0.143 3.857 7 N -0.517 5.517 8 C 0.073 3.927 9 C -0.121 4.121 10 C 0.067 3.933 11 N -0.558 5.558 12 C 0.077 3.923 13 C -0.009 4.009 14 C -0.521 4.521 15 H 0.070 0.930 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.882 3.118 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.265 1.265 22 C 0.076 3.924 23 C 0.059 3.941 24 C -0.112 4.112 25 C -0.057 4.057 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.066 0.934 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.263 0.737 39 H 0.084 0.916 40 H 0.027 0.973 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.139 0.861 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.376 -12.503 -8.218 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.056 4.056 3 C -0.054 4.054 4 C -0.075 4.075 5 C -0.181 4.181 6 C 0.047 3.953 7 N -0.237 5.237 8 C -0.051 4.051 9 C -0.159 4.159 10 C -0.060 4.060 11 N -0.282 5.282 12 C -0.049 4.049 13 C -0.046 4.046 14 C -0.559 4.559 15 H 0.089 0.911 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.710 3.290 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.190 1.190 22 C -0.055 4.055 23 C -0.069 4.069 24 C -0.131 4.131 25 C -0.078 4.078 26 H 0.149 0.851 27 H 0.151 0.849 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.157 0.843 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.760 -12.391 -8.071 24.681 hybrid contribution -0.237 0.026 0.890 0.921 sum -19.997 -12.365 -7.181 24.583 Atomic orbital electron populations 1.81265 1.12141 1.09139 1.07598 1.25756 0.92688 0.93500 0.93686 1.16023 0.84176 1.08423 0.96826 1.21016 0.93890 0.96083 0.96463 1.21646 0.94230 1.02121 1.00139 1.19165 0.89036 0.93706 0.93424 1.58090 1.03276 1.31225 1.31061 1.22466 0.95739 0.86629 1.00315 1.21521 0.92656 0.98478 1.03268 1.21713 0.99450 0.93983 0.90887 1.59311 1.04446 1.30661 1.33797 1.22084 0.89824 0.93261 0.99721 1.19611 0.96838 0.95902 0.92275 1.21085 1.11120 1.27393 0.96308 0.91149 1.25006 0.94737 0.94665 0.99041 1.69919 1.24519 1.31851 1.28017 0.86742 0.81011 0.77681 0.83609 1.20299 1.21552 1.18995 1.20966 0.88802 0.94352 1.01336 1.22233 0.97233 0.99537 0.87855 1.20961 0.92880 1.00303 0.98954 1.21090 0.93947 0.96200 0.96546 0.85102 0.84901 0.94221 0.90750 0.90554 0.90948 0.93726 0.91199 0.95542 0.91575 0.96239 0.96646 0.92753 0.89827 0.95545 0.92221 0.90568 0.84337 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.05 18.54 41.84 0.78 -4.27 16 2 C 0.26 2.45 15.33 -22.47 -0.34 2.10 16 3 C -0.05 -0.39 5.74 -106.80 -0.61 -1.00 16 4 C -0.05 -0.38 9.75 -39.21 -0.38 -0.76 16 5 C -0.16 -1.23 8.62 -39.45 -0.34 -1.57 16 6 C 0.14 1.24 4.60 -83.82 -0.39 0.85 16 7 N -0.52 -5.12 3.91 -170.80 -0.67 -5.79 16 8 C 0.07 0.64 5.43 -2.82 -0.02 0.62 16 9 C -0.12 -1.20 5.36 -27.47 -0.15 -1.35 16 10 C 0.07 0.85 5.34 -4.37 -0.02 0.82 16 11 N -0.56 -8.76 4.08 -239.77 -0.98 -9.74 16 12 C 0.08 1.49 4.90 -3.83 -0.02 1.47 16 13 C -0.01 -0.20 3.94 -27.88 -0.11 -0.31 16 14 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 18 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 22 C 0.08 1.12 4.92 -6.76 -0.03 1.08 16 23 C 0.06 0.66 4.33 -4.44 -0.02 0.65 16 24 C -0.11 -0.84 9.95 -39.44 -0.39 -1.23 16 25 C -0.06 -0.38 9.75 -39.21 -0.38 -0.77 16 26 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 27 H 0.13 0.94 7.14 -52.49 -0.37 0.56 16 28 H 0.04 0.32 8.01 -51.93 -0.42 -0.09 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.86 7.23 -51.93 -0.38 0.48 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.57 7.57 -51.93 -0.39 0.18 16 33 H 0.07 0.88 7.59 -51.93 -0.39 0.48 16 34 H 0.03 0.53 8.11 -51.93 -0.42 0.10 16 35 H 0.07 1.28 7.70 -51.93 -0.40 0.88 16 36 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 37 H 0.02 0.36 5.42 -51.92 -0.28 0.08 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.08 1.39 5.92 -51.93 -0.31 1.08 16 40 H 0.03 0.41 8.07 -51.93 -0.42 -0.01 16 41 H 0.06 0.68 6.93 -51.93 -0.36 0.32 16 42 H 0.08 0.80 6.77 -51.93 -0.35 0.45 16 43 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -31.15 352.57 -9.68 -40.83 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -6.59 Total: -3.81 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -3.64 Total: -12.49 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.10 Total: -46.68 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.15 -9.68 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051851554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.023 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds