Wall clock time and date at job start Tue Mar 31 2020 03:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39805 * 120.07378 * 290.64268 * 3 2 1 5 5 C 1.37653 * 119.92468 * 179.97438 * 4 3 2 6 6 C 1.39179 * 120.07400 * 359.97438 * 5 4 3 7 7 N 1.39186 * 119.92514 * 180.02562 * 6 5 4 8 8 C 1.48057 * 111.00034 * 89.58653 * 7 6 5 9 9 C 1.53699 * 112.47210 * 192.19705 * 8 7 6 10 10 C 1.50799 * 112.10210 * 318.55681 * 9 8 7 11 11 N 1.47908 * 108.50257 * 92.54484 * 10 9 8 12 12 C 1.46897 * 111.00067 * 153.78867 * 11 10 9 13 13 C 1.52997 * 109.47263 * 194.01878 * 12 11 10 14 14 C 1.50700 * 109.47379 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99284 * 359.97438 * 14 13 12 16 16 C 1.37870 * 119.99944 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99552 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00359 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46864 * 90.00230 * 18 16 14 20 20 H 1.48503 * 109.47201 * 210.00155 * 18 16 14 21 21 H 1.48496 * 109.46970 * 330.00420 * 18 16 14 22 22 C 1.40011 * 114.06660 * 280.08456 * 11 10 9 23 23 C 1.44573 * 111.00000 * 321.89917 * 7 6 5 24 24 C 1.39176 * 120.15047 * 0.29058 * 6 5 4 25 25 C 1.37658 * 120.07581 * 359.45329 * 24 6 5 26 26 H 1.08005 * 120.04238 * 359.96459 * 4 3 2 27 27 H 1.07997 * 119.96529 * 180.02562 * 5 4 3 28 28 H 1.09006 * 108.88626 * 312.96848 * 8 7 6 29 29 H 1.08997 * 108.88282 * 71.52605 * 8 7 6 30 30 H 1.09000 * 108.95257 * 79.22818 * 9 8 7 31 31 H 1.09002 * 108.95596 * 197.87300 * 9 8 7 32 32 H 1.09000 * 109.62906 * 332.84296 * 10 9 8 33 33 H 1.08997 * 109.63188 * 212.25573 * 10 9 8 34 34 H 1.09000 * 109.46551 * 74.01698 * 12 11 10 35 35 H 1.08995 * 109.47151 * 314.02153 * 12 11 10 36 36 H 1.09000 * 109.47278 * 59.99634 * 13 12 11 37 37 H 1.09008 * 109.46662 * 300.00188 * 13 12 11 38 38 H 0.97002 * 119.99728 * 179.97438 * 17 16 14 39 39 H 1.08998 * 108.95626 * 182.47752 * 22 11 10 40 40 H 1.08999 * 108.95681 * 301.12973 * 22 11 10 41 41 H 1.09000 * 109.57862 * 100.53892 * 23 7 6 42 42 H 1.09006 * 109.68009 * 340.22077 * 23 7 6 43 43 H 1.07997 * 119.96577 * 179.72357 * 24 6 5 44 44 H 1.07994 * 120.04125 * 180.29203 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2688 -0.4256 1.1322 5 6 4.6454 -0.4242 1.1286 6 6 5.3395 0.0004 -0.0005 7 7 6.7313 0.0000 -0.0009 8 6 7.2615 -1.2974 -0.4784 9 6 8.7680 -1.4492 -0.2149 10 6 9.5253 -0.1772 -0.5018 11 7 9.6239 0.6032 0.7508 12 6 10.8035 1.4785 0.7343 13 6 11.0726 1.9983 2.1479 14 6 12.2824 2.8967 2.1309 15 1 12.8071 3.0783 1.2046 16 6 12.7193 3.4867 3.2979 17 7 13.7755 4.2704 3.2831 18 14 11.8113 3.1732 4.8999 19 1 12.3939 1.9855 5.5747 20 1 11.9432 4.3591 5.7839 21 1 10.3752 2.9256 4.6146 22 6 8.4669 1.3262 1.0656 23 6 7.2499 0.4053 1.2863 24 6 4.6450 0.4305 -1.1274 25 6 3.2685 0.4267 -1.1325 26 1 2.7309 -0.7554 2.0087 27 1 5.1874 -0.7537 2.0027 28 1 6.7315 -2.1034 0.0292 29 1 7.0825 -1.3785 -1.5506 30 1 8.9189 -1.7232 0.8293 31 1 9.1598 -2.2452 -0.8481 32 1 8.9927 0.4042 -1.2545 33 1 10.5251 -0.4195 -0.8621 34 1 10.6220 2.3202 0.0660 35 1 11.6685 0.9158 0.3833 36 1 11.2540 1.1566 2.8162 37 1 10.2075 2.5610 2.4988 38 1 14.0826 4.6858 4.1041 39 1 8.6452 1.9015 1.9741 40 1 8.2467 2.0147 0.2499 41 1 7.5561 -0.4755 1.8506 42 1 6.4801 0.9438 1.8392 43 1 5.1867 0.7635 -2.0003 44 1 2.7302 0.7561 -2.0088 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051851554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:25 Heat of formation + Delta-G solvation = 57.766776 kcal Electronic energy + Delta-G solvation = -23483.092192 eV Core-core repulsion = 20206.963849 eV Total energy + Delta-G solvation = -3276.128343 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.169 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.40921 -39.80112 -37.98762 -36.82255 -35.12362 -33.78520 -32.37443 -31.99526 -31.13547 -28.59622 -26.97221 -25.76628 -24.13776 -23.64577 -22.40623 -21.26226 -20.92186 -19.83834 -19.03961 -18.08191 -16.91845 -16.66596 -16.44812 -16.12465 -15.96436 -15.52933 -15.42948 -15.03769 -14.78013 -14.72419 -14.58562 -14.45473 -14.07706 -13.91104 -13.74836 -13.38577 -13.15163 -13.01319 -12.91018 -12.69117 -12.48277 -12.21788 -12.08794 -11.92324 -11.82658 -11.64380 -11.58021 -11.30987 -11.22852 -10.72358 -10.03310 -9.97736 -9.04168 -9.01932 -8.27238 -6.31124 -0.24856 0.42448 1.39085 1.40354 1.52809 1.61414 1.89064 2.38923 2.70760 2.87232 2.92973 3.08575 3.13839 3.84747 3.96203 4.00985 4.08764 4.23432 4.25899 4.32075 4.40994 4.48193 4.51883 4.59816 4.62767 4.66098 4.77261 4.83787 4.96057 4.99462 5.03511 5.06717 5.08783 5.16100 5.25472 5.33247 5.35750 5.44635 5.48341 5.55794 5.67131 5.71785 6.05167 6.25269 6.36655 6.41067 6.47392 6.65919 6.78532 7.33530 8.89498 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.021175 B = 0.002965 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.984780 B = 9440.795731 C =10226.454094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.282 3.718 3 C -0.058 4.058 4 C -0.048 4.048 5 C -0.162 4.162 6 C 0.133 3.867 7 N -0.525 5.525 8 C 0.075 3.925 9 C -0.114 4.114 10 C 0.068 3.932 11 N -0.557 5.557 12 C 0.089 3.911 13 C 0.000 4.000 14 C -0.531 4.531 15 H 0.031 0.969 16 C 0.004 3.996 17 N -0.952 5.952 18 Si 0.953 3.047 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.245 1.245 22 C 0.075 3.925 23 C 0.073 3.927 24 C -0.114 4.114 25 C -0.048 4.048 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.013 0.987 35 H 0.061 0.939 36 H 0.021 0.979 37 H 0.019 0.981 38 H 0.266 0.734 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.145 0.855 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.433 -14.285 -7.859 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.032 4.032 3 C -0.062 4.062 4 C -0.069 4.069 5 C -0.183 4.183 6 C 0.037 3.963 7 N -0.245 5.245 8 C -0.049 4.049 9 C -0.152 4.152 10 C -0.059 4.059 11 N -0.282 5.282 12 C -0.038 4.038 13 C -0.038 4.038 14 C -0.570 4.570 15 H 0.049 0.951 16 C -0.193 4.193 17 N -0.593 5.593 18 Si 0.776 3.224 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.169 1.169 22 C -0.055 4.055 23 C -0.055 4.055 24 C -0.133 4.133 25 C -0.069 4.069 26 H 0.164 0.836 27 H 0.158 0.842 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.033 0.967 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.163 0.837 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -21.840 -14.196 -7.739 27.174 hybrid contribution 0.479 0.604 0.660 1.014 sum -21.362 -13.593 -7.079 26.291 Atomic orbital electron populations 1.81291 1.13510 1.10938 1.09143 1.25954 0.92806 0.92113 0.92304 1.16099 0.83154 1.09318 0.97594 1.21165 0.93762 0.95228 0.96706 1.21697 0.94379 1.02132 1.00072 1.19250 0.88357 0.94476 0.94249 1.57992 1.04235 1.32100 1.30156 1.22494 0.94723 0.86486 1.01214 1.21457 0.93360 0.97304 1.03108 1.21801 1.00005 0.94713 0.89384 1.59311 1.03480 1.29628 1.35744 1.21768 0.91662 0.93432 0.96968 1.19474 0.94636 0.94938 0.94754 1.21437 1.12446 1.28165 0.94929 0.95100 1.26002 0.95626 0.94315 1.03321 1.70074 1.26539 1.33367 1.29304 0.85613 0.80571 0.77830 0.78338 1.19213 1.21203 1.16852 1.20978 0.89823 0.94973 0.99753 1.22010 0.95821 0.98925 0.88761 1.21042 0.93082 1.00198 0.98975 1.21249 0.93728 0.95142 0.96789 0.83598 0.84169 0.93003 0.89489 0.91571 0.88706 0.93791 0.91371 0.96911 0.92006 0.96080 0.96252 0.92537 0.91991 0.96717 0.91966 0.89555 0.83679 0.83090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.76 18.54 19.00 0.35 -10.41 16 2 C 0.28 4.87 15.33 88.33 1.35 6.22 16 3 C -0.06 -0.74 5.74 -21.27 -0.12 -0.86 16 4 C -0.05 -0.54 9.75 22.51 0.22 -0.32 16 5 C -0.16 -2.00 8.62 22.36 0.19 -1.81 16 6 C 0.13 1.91 4.60 38.43 0.18 2.09 16 7 N -0.53 -9.02 3.91 -694.28 -2.71 -11.73 16 8 C 0.07 1.07 5.43 86.32 0.47 1.54 16 9 C -0.11 -1.96 5.36 30.11 0.16 -1.80 16 10 C 0.07 1.60 5.34 85.39 0.46 2.06 16 11 N -0.56 -17.00 4.08 -912.50 -3.73 -20.72 16 12 C 0.09 3.46 4.90 86.30 0.42 3.89 16 13 C 0.00 -0.01 3.94 29.85 0.12 0.10 16 14 C -0.53 -30.62 9.66 25.60 0.25 -30.37 16 15 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 16 C 0.00 0.23 5.47 84.65 0.46 0.70 16 17 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 18 Si 0.95 44.16 27.47 68.60 1.88 46.05 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 22 C 0.08 2.14 4.92 87.95 0.43 2.57 16 23 C 0.07 1.48 4.33 87.14 0.38 1.86 16 24 C -0.11 -1.39 9.95 22.36 0.22 -1.17 16 25 C -0.05 -0.52 9.75 22.51 0.22 -0.30 16 26 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 27 H 0.14 1.52 7.14 -2.91 -0.02 1.50 16 28 H 0.05 0.65 8.01 -2.38 -0.02 0.63 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.31 7.23 -2.39 -0.02 1.29 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 1.06 7.57 -2.39 -0.02 1.04 16 33 H 0.07 1.63 7.59 -2.39 -0.02 1.61 16 34 H 0.01 0.52 8.11 -2.39 -0.02 0.50 16 35 H 0.06 2.43 7.70 -2.39 -0.02 2.41 16 36 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 37 H 0.02 0.89 5.42 -2.38 -0.01 0.87 16 38 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.06 2.01 5.92 -2.39 -0.01 2.00 16 40 H 0.01 0.45 8.07 -2.39 -0.02 0.43 16 41 H 0.06 1.25 6.93 -2.39 -0.02 1.23 16 42 H 0.09 1.59 6.77 -2.38 -0.02 1.57 16 43 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 44 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -68.90 352.57 2.44 -66.46 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 0.93 Total: 5.48 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 5.41 Total: -15.61 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -5.79 Total: -102.38 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.05 kcal Total: -68.90 2.44 -66.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051851554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.225 kcal (2) G-P(sol) polarization free energy of solvation -68.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds