Wall clock time and date at job start Tue Mar 31 2020 04:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.50877 * 2 1 4 4 C 1.53057 * 109.49240 * 120.06257 * 2 1 3 5 5 N 1.46952 * 109.36667 * 178.36693 * 4 2 1 6 6 C 1.46892 * 111.00046 * 176.80870 * 5 4 2 7 7 C 1.53004 * 109.47378 * 191.56637 * 6 5 4 8 8 C 1.52997 * 109.47036 * 53.41550 * 7 6 5 9 9 C 1.52998 * 109.47383 * 173.41736 * 7 6 5 10 10 O 1.42906 * 109.46833 * 293.41847 * 7 6 5 11 11 C 1.46951 * 110.87998 * 300.67696 * 5 4 2 12 12 C 1.53051 * 109.36575 * 59.31775 * 11 5 4 13 13 N 1.46952 * 109.36629 * 301.60020 * 12 11 5 14 14 C 1.46900 * 110.99916 * 183.18458 * 13 12 11 15 15 C 1.50707 * 109.47233 * 66.04923 * 14 13 12 16 16 O 1.21296 * 119.99547 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00220 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99760 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00426 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99838 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00317 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47179 * 89.99620 * 22 20 18 24 24 H 1.48498 * 109.47268 * 209.99946 * 22 20 18 25 25 H 1.48502 * 109.46760 * 329.99847 * 22 20 18 26 26 H 1.08998 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46956 * 300.04796 * 1 2 3 28 28 H 1.08992 * 109.47509 * 60.05173 * 1 2 3 29 29 H 1.08996 * 109.48607 * 58.39343 * 4 2 1 30 30 H 1.09000 * 109.49995 * 298.34379 * 4 2 1 31 31 H 1.09006 * 109.47546 * 311.56275 * 6 5 4 32 32 H 1.08992 * 109.47476 * 71.56282 * 6 5 4 33 33 H 1.09000 * 109.47689 * 54.81061 * 8 7 6 34 34 H 1.09002 * 109.46970 * 174.81107 * 8 7 6 35 35 H 1.09005 * 109.47072 * 294.80829 * 8 7 6 36 36 H 1.09001 * 109.47147 * 59.99376 * 9 7 6 37 37 H 1.09001 * 109.47183 * 179.97438 * 9 7 6 38 38 H 1.09000 * 109.47196 * 299.99717 * 9 7 6 39 39 H 0.96700 * 113.99541 * 299.99480 * 10 7 6 40 40 H 1.09000 * 109.48961 * 299.35192 * 11 5 4 41 41 H 1.09003 * 109.49106 * 179.28993 * 11 5 4 42 42 H 1.09005 * 109.48974 * 181.62907 * 12 11 5 43 43 H 1.09003 * 109.48570 * 61.57160 * 12 11 5 44 44 H 1.09000 * 109.47484 * 186.04578 * 14 13 12 45 45 H 1.08997 * 109.47531 * 306.05082 * 14 13 12 46 46 H 0.97001 * 119.99909 * 0.02562 * 17 15 14 47 47 H 0.97005 * 120.00090 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7228 1.2488 5 7 3.5097 -0.7555 1.2263 6 6 4.0411 -1.3754 2.4474 7 6 5.5503 -1.1363 2.5255 8 6 5.8372 0.3605 2.3901 9 6 6.0770 -1.6367 3.8720 10 8 6.2001 -1.8435 1.4673 11 6 3.9999 -1.4492 0.0272 12 6 3.4892 -0.7265 -1.2216 13 7 2.0202 -0.6938 -1.1992 14 6 1.4887 -0.0738 -2.4202 15 6 1.8098 -0.9455 -3.6070 16 8 2.4217 -1.9811 -3.4508 17 7 1.4172 -0.5743 -4.8417 18 6 1.7098 -1.3670 -5.9212 19 1 2.2545 -2.2891 -5.7823 20 6 1.3054 -0.9841 -7.1942 21 7 0.6421 0.1377 -7.3633 22 14 1.7034 -2.0645 -8.6652 23 1 0.6014 -3.0369 -8.8778 24 1 1.8560 -1.2171 -9.8751 25 1 2.9693 -2.7985 -8.4121 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5146 0.8896 28 1 -0.3634 0.5130 -0.8904 29 1 1.6544 -1.7419 1.2625 30 1 1.7023 -0.1935 2.1395 31 1 3.5578 -0.9341 3.3190 32 1 3.8437 -2.4471 2.4263 33 1 5.2682 0.9090 3.1407 34 1 6.9020 0.5411 2.5376 35 1 5.5459 0.6977 1.3952 36 1 5.8726 -2.7030 3.9686 37 1 7.1522 -1.4667 3.9275 38 1 5.5814 -1.0972 4.6792 39 1 6.0612 -2.8002 1.4904 40 1 3.6359 -2.4766 0.0271 41 1 5.0899 -1.4492 0.0271 42 1 3.8277 -1.2561 -2.1122 43 1 3.8755 0.2927 -1.2354 44 1 0.4079 0.0353 -2.3316 45 1 1.9430 0.9075 -2.5568 46 1 0.9282 0.2541 -4.9665 47 1 0.3595 0.4048 -8.2520 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189466569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:18 Heat of formation + Delta-G solvation = -70.194542 kcal Electronic energy + Delta-G solvation = -25758.198740 eV Core-core repulsion = 22169.212658 eV Total energy + Delta-G solvation = -3588.986082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.87545 -38.57145 -37.41614 -34.84900 -33.82418 -32.55666 -32.02347 -31.18317 -28.92289 -27.52564 -26.83880 -26.12245 -24.33298 -23.05632 -21.76719 -20.34738 -19.49399 -19.05432 -17.80011 -16.82746 -16.27032 -15.84640 -15.47140 -15.18630 -14.91114 -14.66643 -14.48714 -14.12357 -13.72057 -13.56588 -13.48234 -13.40092 -12.81766 -12.46449 -12.39069 -12.29577 -12.15386 -12.00362 -11.84786 -11.71294 -11.50078 -11.34613 -11.27275 -11.05529 -10.85795 -10.77972 -10.65837 -10.44831 -10.35937 -10.17393 -9.53334 -9.42197 -8.37685 -8.22012 -7.92002 -7.71996 -6.37205 -3.77669 3.20807 3.29000 3.34999 3.81550 3.97378 4.04668 4.09616 4.29984 4.63487 4.73900 4.83922 4.96136 5.08266 5.21077 5.23958 5.28969 5.31829 5.37666 5.42848 5.55981 5.63590 5.64597 5.68341 5.72379 5.78868 5.84544 5.85684 5.88953 5.93656 6.04566 6.14264 6.19375 6.28317 6.34029 6.36004 6.45991 6.61364 7.08128 7.13858 7.45892 7.50470 7.57476 7.60092 8.11880 8.67517 9.23180 9.60280 10.12626 10.80741 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.024042 B = 0.003213 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.362813 B = 8711.545463 C = 9472.710763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.083 3.917 3 H 0.044 0.956 4 C 0.065 3.935 5 N -0.533 5.533 6 C 0.032 3.968 7 C 0.130 3.870 8 C -0.126 4.126 9 C -0.177 4.177 10 O -0.552 6.552 11 C 0.043 3.957 12 C 0.056 3.944 13 N -0.512 5.512 14 C 0.041 3.959 15 C 0.446 3.554 16 O -0.578 6.578 17 N -0.566 5.566 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.270 1.270 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.373 0.627 40 H 0.034 0.966 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.027 0.973 44 H 0.092 0.908 45 H 0.045 0.955 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 1.300 21.293 21.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 H 0.062 0.938 4 C -0.064 4.064 5 N -0.257 5.257 6 C -0.097 4.097 7 C 0.089 3.911 8 C -0.183 4.183 9 C -0.235 4.235 10 O -0.358 6.358 11 C -0.084 4.084 12 C -0.071 4.071 13 N -0.237 5.237 14 C -0.090 4.090 15 C 0.232 3.768 16 O -0.462 6.462 17 N -0.203 5.203 18 C -0.426 4.426 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.194 1.194 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.221 0.779 40 H 0.053 0.947 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.045 0.955 44 H 0.110 0.890 45 H 0.063 0.937 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.349 1.291 21.058 21.765 hybrid contribution -0.566 -0.522 -0.663 1.016 sum 4.783 0.768 20.394 20.962 Atomic orbital electron populations 1.21904 0.94392 1.02697 1.01643 1.21627 0.94938 0.95815 0.90238 0.93813 1.22163 0.87555 0.99464 0.97194 1.62191 1.07851 1.53592 1.02044 1.22757 0.95811 0.97310 0.93829 1.21261 0.89893 0.93839 0.86070 1.21575 1.00725 0.92131 1.03854 1.22467 1.02191 1.01337 0.97462 1.86575 1.75761 1.23210 1.50266 1.22706 1.02374 0.95296 0.88066 1.22337 0.86489 0.98975 0.99333 1.61815 1.09160 1.52627 1.00139 1.21931 1.01047 0.95724 0.90289 1.19777 0.85117 0.88171 0.83778 1.90474 1.44568 1.26180 1.84946 1.41868 1.50420 1.22803 1.05199 1.19688 1.33704 1.04682 0.84564 0.87968 1.25247 0.96924 0.96838 0.98994 1.69615 1.38673 1.22209 1.23991 0.85871 0.79021 0.79312 0.80163 1.20466 1.20981 1.19436 0.91759 0.92446 0.91928 0.94228 0.91049 0.90426 0.94805 0.91762 0.93016 0.90520 0.92533 0.91602 0.91617 0.77941 0.94720 0.86906 0.87681 0.95474 0.89029 0.93668 0.77542 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.89 37.16 0.33 -1.49 16 2 C 0.08 1.16 2.56 -67.65 -0.17 0.99 16 3 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.06 0.81 4.88 -3.77 -0.02 0.79 16 5 N -0.53 -6.65 3.76 -234.48 -0.88 -7.53 16 6 C 0.03 0.31 4.29 -3.83 -0.02 0.29 16 7 C 0.13 1.20 1.10 -90.62 -0.10 1.10 16 8 C -0.13 -1.24 8.51 37.16 0.32 -0.92 16 9 C -0.18 -1.24 8.81 37.16 0.33 -0.92 16 10 O -0.55 -5.78 9.69 -35.23 -0.34 -6.12 16 11 C 0.04 0.63 5.17 -3.77 -0.02 0.61 16 12 C 0.06 1.00 5.26 -3.77 -0.02 0.98 16 13 N -0.51 -9.01 4.26 -227.92 -0.97 -9.98 16 14 C 0.04 0.78 5.21 -4.97 -0.03 0.75 16 15 C 0.45 10.77 7.48 -10.98 -0.08 10.69 16 16 O -0.58 -15.77 13.90 5.54 0.08 -15.69 16 17 N -0.57 -14.62 5.29 -10.96 -0.06 -14.68 16 18 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 22 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 28 H 0.06 0.78 6.15 -51.93 -0.32 0.46 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 31 H 0.08 0.67 7.99 -51.93 -0.42 0.26 16 32 H 0.03 0.33 8.10 -51.93 -0.42 -0.09 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.93 7.63 -51.93 -0.40 0.53 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.37 2.85 9.05 45.56 0.41 3.26 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.11 1.63 5.03 -51.93 -0.26 1.37 16 42 H 0.11 2.22 5.84 -51.93 -0.30 1.92 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.09 1.57 5.74 -51.93 -0.30 1.27 16 45 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 46 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -31.56 362.81 -8.05 -39.61 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -7.32 Total: 11.98 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 0.28 Total: 4.83 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -1.19 Total: -56.39 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.26 Total: -21.81 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.56 -8.05 -39.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189466569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.583 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds