Wall clock time and date at job start Tue Mar 31 2020 04:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.50877 * 2 1 4 4 C 1.53057 * 109.49240 * 120.06257 * 2 1 3 5 5 N 1.46952 * 109.36667 * 178.36693 * 4 2 1 6 6 C 1.46892 * 111.00046 * 176.80870 * 5 4 2 7 7 C 1.53004 * 109.47378 * 191.56637 * 6 5 4 8 8 C 1.52997 * 109.47036 * 53.41550 * 7 6 5 9 9 C 1.52998 * 109.47383 * 173.41736 * 7 6 5 10 10 O 1.42906 * 109.46833 * 293.41847 * 7 6 5 11 11 C 1.46951 * 110.87998 * 300.67696 * 5 4 2 12 12 C 1.53051 * 109.36575 * 59.31775 * 11 5 4 13 13 N 1.46952 * 109.36629 * 301.60020 * 12 11 5 14 14 C 1.46900 * 110.99916 * 183.18458 * 13 12 11 15 15 C 1.50707 * 109.47233 * 66.04923 * 14 13 12 16 16 O 1.21296 * 119.99547 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00220 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99760 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00426 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99838 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00317 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47179 * 89.99620 * 22 20 18 24 24 H 1.48498 * 109.47268 * 209.99946 * 22 20 18 25 25 H 1.48502 * 109.46760 * 329.99847 * 22 20 18 26 26 H 1.08998 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46956 * 300.04796 * 1 2 3 28 28 H 1.08992 * 109.47509 * 60.05173 * 1 2 3 29 29 H 1.08996 * 109.48607 * 58.39343 * 4 2 1 30 30 H 1.09000 * 109.49995 * 298.34379 * 4 2 1 31 31 H 1.09006 * 109.47546 * 311.56275 * 6 5 4 32 32 H 1.08992 * 109.47476 * 71.56282 * 6 5 4 33 33 H 1.09000 * 109.47689 * 54.81061 * 8 7 6 34 34 H 1.09002 * 109.46970 * 174.81107 * 8 7 6 35 35 H 1.09005 * 109.47072 * 294.80829 * 8 7 6 36 36 H 1.09001 * 109.47147 * 59.99376 * 9 7 6 37 37 H 1.09001 * 109.47183 * 179.97438 * 9 7 6 38 38 H 1.09000 * 109.47196 * 299.99717 * 9 7 6 39 39 H 0.96700 * 113.99541 * 299.99480 * 10 7 6 40 40 H 1.09000 * 109.48961 * 299.35192 * 11 5 4 41 41 H 1.09003 * 109.49106 * 179.28993 * 11 5 4 42 42 H 1.09005 * 109.48974 * 181.62907 * 12 11 5 43 43 H 1.09003 * 109.48570 * 61.57160 * 12 11 5 44 44 H 1.09000 * 109.47484 * 186.04578 * 14 13 12 45 45 H 1.08997 * 109.47531 * 306.05082 * 14 13 12 46 46 H 0.97001 * 119.99909 * 0.02562 * 17 15 14 47 47 H 0.97005 * 120.00090 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7228 1.2488 5 7 3.5097 -0.7555 1.2263 6 6 4.0411 -1.3754 2.4474 7 6 5.5503 -1.1363 2.5255 8 6 5.8372 0.3605 2.3901 9 6 6.0770 -1.6367 3.8720 10 8 6.2001 -1.8435 1.4673 11 6 3.9999 -1.4492 0.0272 12 6 3.4892 -0.7265 -1.2216 13 7 2.0202 -0.6938 -1.1992 14 6 1.4887 -0.0738 -2.4202 15 6 1.8098 -0.9455 -3.6070 16 8 2.4217 -1.9811 -3.4508 17 7 1.4172 -0.5743 -4.8417 18 6 1.7098 -1.3670 -5.9212 19 1 2.2545 -2.2891 -5.7823 20 6 1.3054 -0.9841 -7.1942 21 7 0.6421 0.1377 -7.3633 22 14 1.7034 -2.0645 -8.6652 23 1 0.6014 -3.0369 -8.8778 24 1 1.8560 -1.2171 -9.8751 25 1 2.9693 -2.7985 -8.4121 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5146 0.8896 28 1 -0.3634 0.5130 -0.8904 29 1 1.6544 -1.7419 1.2625 30 1 1.7023 -0.1935 2.1395 31 1 3.5578 -0.9341 3.3190 32 1 3.8437 -2.4471 2.4263 33 1 5.2682 0.9090 3.1407 34 1 6.9020 0.5411 2.5376 35 1 5.5459 0.6977 1.3952 36 1 5.8726 -2.7030 3.9686 37 1 7.1522 -1.4667 3.9275 38 1 5.5814 -1.0972 4.6792 39 1 6.0612 -2.8002 1.4904 40 1 3.6359 -2.4766 0.0271 41 1 5.0899 -1.4492 0.0271 42 1 3.8277 -1.2561 -2.1122 43 1 3.8755 0.2927 -1.2354 44 1 0.4079 0.0353 -2.3316 45 1 1.9430 0.9075 -2.5568 46 1 0.9282 0.2541 -4.9665 47 1 0.3595 0.4048 -8.2520 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189466569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:17 Heat of formation + Delta-G solvation = -95.377691 kcal Electronic energy + Delta-G solvation = -25759.290763 eV Core-core repulsion = 22169.212658 eV Total energy + Delta-G solvation = -3590.078105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.06042 -39.99497 -38.76089 -36.16055 -35.68493 -33.45403 -33.23519 -33.16975 -30.26375 -28.23179 -27.89175 -27.54806 -25.97687 -24.34942 -22.88111 -21.12869 -21.08218 -20.57014 -19.85809 -17.87725 -17.66445 -16.95126 -16.73730 -16.52776 -16.31612 -16.03450 -15.72573 -15.62911 -15.22770 -15.07613 -14.76567 -14.44713 -13.87624 -13.72816 -13.57297 -13.41946 -13.19485 -13.00197 -12.95615 -12.90472 -12.78700 -12.63439 -12.42705 -12.40431 -12.28606 -12.13283 -12.02556 -11.89555 -11.64022 -11.55769 -11.41712 -10.43906 -10.25468 -9.99853 -9.29735 -9.14367 -8.46227 -5.94857 1.37577 1.40842 1.53907 2.05326 2.28327 2.74303 2.91491 3.20255 3.34311 3.42325 3.86714 3.87310 4.02235 4.06905 4.16142 4.20248 4.32530 4.32880 4.45083 4.46096 4.53462 4.59306 4.60516 4.74863 4.78657 4.81539 4.86488 4.95824 4.98688 5.04269 5.06806 5.08342 5.15334 5.28728 5.33618 5.36693 5.41099 5.50409 5.87651 6.02674 6.06005 6.23828 6.31152 6.61317 6.86440 7.13327 7.56624 8.12836 8.71409 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.024042 B = 0.003213 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.362813 B = 8711.545463 C = 9472.710763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.081 3.919 3 H 0.046 0.954 4 C 0.067 3.933 5 N -0.533 5.533 6 C 0.032 3.968 7 C 0.128 3.872 8 C -0.124 4.124 9 C -0.169 4.169 10 O -0.572 6.572 11 C 0.059 3.941 12 C 0.060 3.940 13 N -0.527 5.527 14 C 0.054 3.946 15 C 0.443 3.557 16 O -0.613 6.613 17 N -0.575 5.575 18 C -0.331 4.331 19 H 0.078 0.922 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.273 1.273 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.383 0.617 40 H 0.016 0.984 41 H 0.116 0.884 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.113 0.887 45 H 0.058 0.942 46 H 0.395 0.605 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.265 1.870 23.123 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 H 0.064 0.936 4 C -0.061 4.061 5 N -0.258 5.258 6 C -0.096 4.096 7 C 0.088 3.912 8 C -0.181 4.181 9 C -0.227 4.227 10 O -0.380 6.380 11 C -0.069 4.069 12 C -0.068 4.068 13 N -0.253 5.253 14 C -0.077 4.077 15 C 0.230 3.770 16 O -0.499 6.499 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.198 1.198 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.232 0.768 40 H 0.034 0.966 41 H 0.133 0.867 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.131 0.869 45 H 0.076 0.924 46 H 0.229 0.771 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.781 1.877 22.914 23.483 hybrid contribution -0.380 -0.682 -1.173 1.409 sum 4.401 1.194 21.741 22.214 Atomic orbital electron populations 1.21887 0.92790 1.02457 1.03027 1.21799 0.96208 0.95668 0.89068 0.93590 1.22217 0.87357 0.99066 0.97509 1.62191 1.08056 1.53418 1.02086 1.22863 0.96255 0.97427 0.93006 1.21355 0.89521 0.93428 0.86939 1.21568 1.01023 0.92838 1.02721 1.22383 1.02045 1.02019 0.96242 1.86534 1.76022 1.24290 1.51199 1.22464 1.02323 0.93912 0.88160 1.22163 0.87013 0.98486 0.99121 1.61815 1.08892 1.53709 1.00913 1.21800 1.02473 0.94773 0.88674 1.20744 0.83489 0.88141 0.84620 1.90453 1.45772 1.28070 1.85655 1.41930 1.50982 1.22832 1.05487 1.19647 1.35333 1.04907 0.86208 0.90391 1.26040 0.96207 0.98056 1.01009 1.69677 1.38587 1.23006 1.25009 0.84930 0.78669 0.77804 0.76944 1.19604 1.19481 1.19804 0.92757 0.89320 0.92294 0.95314 0.87906 0.88259 0.94628 0.90202 0.92945 0.93165 0.91650 0.91829 0.90199 0.76753 0.96559 0.86701 0.91933 0.95659 0.86877 0.92369 0.77117 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.89 71.98 0.64 -2.53 16 2 C 0.08 2.12 2.56 44.92 0.12 2.24 16 3 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.07 1.51 4.88 86.31 0.42 1.93 16 5 N -0.53 -12.54 3.76 -895.75 -3.37 -15.91 16 6 C 0.03 0.56 4.29 86.31 0.37 0.93 16 7 C 0.13 2.13 1.10 -10.79 -0.01 2.12 16 8 C -0.12 -2.26 8.51 71.98 0.61 -1.65 16 9 C -0.17 -1.94 8.81 71.98 0.63 -1.31 16 10 O -0.57 -11.65 9.69 -148.98 -1.44 -13.09 16 11 C 0.06 1.77 5.17 86.31 0.45 2.22 16 12 C 0.06 2.21 5.26 86.31 0.45 2.66 16 13 N -0.53 -18.59 4.26 -875.01 -3.73 -22.32 16 14 C 0.05 2.03 5.21 85.56 0.45 2.47 16 15 C 0.44 22.10 7.48 87.66 0.66 22.76 16 16 O -0.61 -35.12 13.90 -3.08 -0.04 -35.16 16 17 N -0.57 -30.60 5.29 -306.98 -1.62 -32.22 16 18 C -0.33 -19.31 9.68 84.04 0.81 -18.50 16 19 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 20 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 21 N -0.92 -50.77 13.05 21.66 0.28 -50.49 16 22 Si 0.99 43.85 29.55 68.60 2.03 45.87 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.06 1.34 6.15 -2.39 -0.01 1.32 16 29 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 1.73 8.06 -2.39 -0.02 1.71 16 31 H 0.10 1.33 7.99 -2.38 -0.02 1.31 16 32 H 0.04 0.63 8.10 -2.39 -0.02 0.61 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 1.18 7.63 -2.38 -0.02 1.17 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.38 5.66 9.05 -74.06 -0.67 4.99 16 40 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.12 3.40 5.03 -2.39 -0.01 3.39 16 42 H 0.06 2.82 5.84 -2.38 -0.01 2.81 16 43 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.11 3.77 5.74 -2.39 -0.01 3.76 16 45 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 46 H 0.40 20.02 7.90 -92.71 -0.73 19.29 16 47 H 0.28 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -69.99 362.81 -2.27 -72.26 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -0.44 Total: 38.00 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 6.06 Total: 13.07 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -8.44 Total: -120.94 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -1.49 Total: -48.25 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.99 -2.27 -72.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189466569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.122 kcal (2) G-P(sol) polarization free energy of solvation -69.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds