Wall clock time and date at job start Tue Mar 31 2020 03:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.46969 * 2 1 4 4 C 1.34227 * 116.99997 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00229 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00197 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.46758 * 319.99594 * 6 4 3 8 8 N 1.46901 * 109.47003 * 200.00248 * 6 4 3 9 9 C 1.50694 * 109.47131 * 79.99721 * 6 4 3 10 10 O 1.21285 * 119.99691 * 99.99841 * 9 6 4 11 11 N 1.34771 * 120.00219 * 280.00450 * 9 6 4 12 12 C 1.47086 * 120.88070 * 180.02562 * 11 9 6 13 13 C 1.53246 * 108.51814 * 231.16009 * 12 11 9 14 14 N 1.46902 * 109.33711 * 306.16785 * 13 12 11 15 15 C 1.46902 * 110.99497 * 187.25382 * 14 13 12 16 16 C 1.50699 * 109.47117 * 65.70000 * 15 14 13 17 17 H 1.08000 * 119.99735 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00035 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99471 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99932 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47198 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46850 * 120.00369 * 20 18 16 23 23 H 1.48497 * 109.47006 * 240.00018 * 20 18 16 24 24 C 1.46905 * 111.26950 * 63.11028 * 14 13 12 25 25 C 1.47077 * 120.88322 * 359.97189 * 11 9 6 26 26 H 1.08996 * 109.47033 * 59.99807 * 1 2 3 27 27 H 1.08994 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47302 * 300.00071 * 1 2 3 29 29 H 1.08998 * 109.47302 * 239.99929 * 2 1 3 30 30 H 1.09001 * 109.47377 * 119.99536 * 2 1 3 31 31 H 1.00904 * 110.99852 * 299.99189 * 8 6 4 32 32 H 1.00900 * 111.00340 * 63.94960 * 8 6 4 33 33 H 1.08995 * 109.62590 * 350.86768 * 12 11 9 34 34 H 1.09001 * 109.62973 * 111.45087 * 12 11 9 35 35 H 1.08998 * 109.49282 * 66.12711 * 13 12 11 36 36 H 1.09001 * 109.48895 * 186.20865 * 13 12 11 37 37 H 1.09008 * 109.46656 * 185.70064 * 15 14 13 38 38 H 1.09002 * 109.47174 * 305.69787 * 15 14 13 39 39 H 0.97003 * 119.99505 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.49314 * 176.93241 * 24 14 13 41 41 H 1.09000 * 109.49217 * 56.84795 * 24 14 13 42 42 H 1.08997 * 109.63136 * 248.55193 * 25 11 9 43 43 H 1.09010 * 109.62363 * 9.13571 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.3324 3.5743 -0.6595 8 7 5.3107 2.8927 -0.4721 9 6 3.8842 3.4956 1.4005 10 8 4.8862 3.4856 2.0836 11 7 2.7380 4.0057 1.8928 12 6 2.6806 4.5559 3.2557 13 6 1.4975 3.9156 3.9897 14 7 0.2758 4.0973 3.1945 15 6 -0.9086 3.6506 3.9399 16 6 -1.1149 4.5429 5.1367 17 1 -0.4345 5.3603 5.3245 18 6 -2.1730 4.3164 5.9913 19 7 -3.0018 3.3213 5.7622 20 14 -2.4291 5.4229 7.4744 21 1 -1.3676 6.4609 7.5067 22 1 -3.7585 6.0778 7.3796 23 1 -2.3651 4.6099 8.7154 24 6 0.3745 3.4080 1.9009 25 6 1.5116 4.0281 1.0812 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 5.8770 2.3081 0.1243 32 1 5.3563 2.5826 -1.4312 33 1 3.6065 4.3257 3.7827 34 1 2.5414 5.6360 3.2090 35 1 1.6875 2.8510 4.1266 36 1 1.3726 4.3912 4.9624 37 1 -1.7850 3.7011 3.2936 38 1 -0.7619 2.6233 4.2736 39 1 -3.7459 3.1617 6.3637 40 1 -0.5651 3.5156 1.3589 41 1 0.5801 2.3506 2.0670 42 1 1.2602 5.0574 0.8258 43 1 1.6647 3.4487 0.1706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224183372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:42 Heat of formation + Delta-G solvation = -104.492148 kcal Electronic energy + Delta-G solvation = -25925.498992 eV Core-core repulsion = 22199.192560 eV Total energy + Delta-G solvation = -3726.306432 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24590 -39.75516 -37.80666 -36.97270 -34.61339 -34.37982 -32.44781 -31.89638 -30.90009 -28.70104 -27.22853 -25.52083 -23.77407 -23.08631 -22.32949 -21.69629 -20.45256 -18.97323 -18.31035 -17.76703 -17.14405 -16.58096 -16.41326 -15.97294 -15.27857 -14.79856 -14.72464 -14.50639 -14.23534 -14.21307 -13.98089 -13.63164 -13.55175 -13.09573 -12.89450 -12.57767 -12.24425 -12.16870 -12.03760 -11.69054 -11.31194 -11.19886 -11.11780 -10.88651 -10.80844 -10.73706 -10.62839 -10.58418 -10.02095 -9.88199 -9.37573 -9.28058 -8.58572 -8.48330 -7.36298 -6.09273 -4.10843 1.62091 2.11186 2.66230 2.95420 3.27612 3.35574 3.39969 4.04143 4.24014 4.36039 4.37375 4.60236 4.72670 4.74689 4.80905 5.05556 5.20948 5.26476 5.37304 5.45306 5.52204 5.59138 5.63153 5.75774 5.84174 5.88775 5.97517 6.13724 6.22570 6.36016 6.41988 6.48213 6.64789 6.93118 7.18008 7.23562 7.31520 7.37836 7.72031 7.97358 8.03482 8.08486 8.44559 8.96771 9.54088 11.01588 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.004227 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.451425 B = 6623.258076 C = 7671.336780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.062 3.938 3 O -0.347 6.347 4 C 0.435 3.565 5 O -0.502 6.502 6 C 0.082 3.918 7 H 0.139 0.861 8 N -0.795 5.795 9 C 0.527 3.473 10 O -0.523 6.523 11 N -0.598 5.598 12 C 0.115 3.885 13 C 0.052 3.948 14 N -0.536 5.536 15 C 0.195 3.805 16 C -0.509 4.509 17 H 0.065 0.935 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.046 3.954 25 C 0.107 3.893 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.365 0.635 32 H 0.353 0.647 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.023 0.977 36 H 0.099 0.901 37 H 0.032 0.968 38 H -0.010 1.010 39 H 0.261 0.739 40 H 0.081 0.919 41 H 0.029 0.971 42 H 0.079 0.921 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.871 -3.396 -14.966 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.012 4.012 3 O -0.262 6.262 4 C 0.274 3.726 5 O -0.389 6.389 6 C -0.036 4.036 7 H 0.157 0.843 8 N -0.328 5.328 9 C 0.312 3.688 10 O -0.399 6.399 11 N -0.331 5.331 12 C -0.007 4.007 13 C -0.078 4.078 14 N -0.261 5.261 15 C 0.070 3.930 16 C -0.548 4.548 17 H 0.083 0.917 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.083 4.083 25 C -0.016 4.016 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.181 0.819 32 H 0.167 0.833 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.117 0.883 37 H 0.050 0.950 38 H 0.008 0.992 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.047 0.953 42 H 0.097 0.903 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.395 -2.525 -14.467 17.434 hybrid contribution -0.520 -1.651 0.770 1.895 sum 8.875 -4.176 -13.697 16.847 Atomic orbital electron populations 1.21847 0.91918 1.03255 1.04183 1.23120 0.95940 0.79674 1.02429 1.86585 1.23611 1.32952 1.83087 1.24818 0.81565 0.93417 0.72755 1.90683 1.60585 1.42584 1.45031 1.21361 0.92739 0.90719 0.98731 0.84349 1.58867 1.04673 1.61122 1.08155 1.19525 0.83628 0.78981 0.86706 1.90710 1.33425 1.56825 1.58902 1.48209 1.09376 1.59272 1.16286 1.21941 0.99605 0.98517 0.80602 1.22342 0.89122 0.98167 0.98124 1.62098 1.03834 1.56979 1.03221 1.19716 0.86191 0.94206 0.92901 1.21183 1.11539 1.13995 1.08038 0.91712 1.24983 0.95854 0.95497 0.98188 1.69963 1.15952 1.29808 1.38033 0.86449 0.78140 0.80553 0.82334 1.19584 1.20999 1.21133 1.22327 0.97530 0.95634 0.92834 1.22114 0.83660 1.02077 0.93759 0.91269 0.90153 0.90722 0.91279 0.91221 0.81890 0.83276 0.89316 0.90405 0.95871 0.88313 0.95019 0.99191 0.92946 0.90043 0.95254 0.90270 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 10.29 37.16 0.38 -0.98 16 2 C 0.06 0.63 6.19 37.16 0.23 0.86 16 3 O -0.35 -3.98 7.80 -39.25 -0.31 -4.29 16 4 C 0.44 5.41 7.11 36.01 0.26 5.67 16 5 O -0.50 -7.29 16.00 -18.75 -0.30 -7.59 16 6 C 0.08 0.94 2.85 -70.02 -0.20 0.74 16 7 H 0.14 1.18 6.87 -51.93 -0.36 0.82 16 8 N -0.80 -8.42 8.74 -6.65 -0.06 -8.48 16 9 C 0.53 7.84 6.94 -10.99 -0.08 7.76 16 10 O -0.52 -9.41 15.70 5.55 0.09 -9.33 16 11 N -0.60 -8.74 3.01 -172.43 -0.52 -9.25 16 12 C 0.12 1.83 6.60 -3.59 -0.02 1.81 16 13 C 0.05 0.96 5.46 -3.70 -0.02 0.94 16 14 N -0.54 -10.67 4.62 -235.72 -1.09 -11.76 16 15 C 0.19 4.78 4.72 -4.98 -0.02 4.76 16 16 C -0.51 -13.64 8.41 -34.44 -0.29 -13.93 16 17 H 0.06 1.72 7.13 -52.49 -0.37 1.34 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 20 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 24 C 0.05 0.74 5.62 -3.68 -0.02 0.72 16 25 C 0.11 1.37 5.90 -3.58 -0.02 1.35 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 29 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.36 4.37 8.17 -39.29 -0.32 4.05 16 32 H 0.35 2.76 9.06 -39.29 -0.36 2.41 16 33 H 0.09 1.42 7.06 -51.93 -0.37 1.06 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.10 1.97 6.67 -51.93 -0.35 1.62 16 37 H 0.03 0.83 7.97 -51.92 -0.41 0.41 16 38 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.08 1.24 7.99 -51.93 -0.41 0.83 16 41 H 0.03 0.49 7.97 -51.93 -0.41 0.08 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 0.91 3.92 -51.92 -0.20 0.70 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -32.15 349.83 -7.60 -39.75 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.50 Total: 3.64 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 0.10 Total: 11.14 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.93 Total: -54.61 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.52 Total: -21.21 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.15 -7.60 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224183372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.744 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds