Wall clock time and date at job start Tue Mar 31 2020 03:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.46969 * 2 1 4 4 C 1.34227 * 116.99997 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00229 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00197 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.46758 * 319.99594 * 6 4 3 8 8 N 1.46901 * 109.47003 * 200.00248 * 6 4 3 9 9 C 1.50694 * 109.47131 * 79.99721 * 6 4 3 10 10 O 1.21285 * 119.99691 * 99.99841 * 9 6 4 11 11 N 1.34771 * 120.00219 * 280.00450 * 9 6 4 12 12 C 1.47086 * 120.88070 * 180.02562 * 11 9 6 13 13 C 1.53246 * 108.51814 * 231.16009 * 12 11 9 14 14 N 1.46902 * 109.33711 * 306.16785 * 13 12 11 15 15 C 1.46902 * 110.99497 * 187.25382 * 14 13 12 16 16 C 1.50699 * 109.47117 * 65.70000 * 15 14 13 17 17 H 1.08000 * 119.99735 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00035 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99471 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99932 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47198 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46850 * 120.00369 * 20 18 16 23 23 H 1.48497 * 109.47006 * 240.00018 * 20 18 16 24 24 C 1.46905 * 111.26950 * 63.11028 * 14 13 12 25 25 C 1.47077 * 120.88322 * 359.97189 * 11 9 6 26 26 H 1.08996 * 109.47033 * 59.99807 * 1 2 3 27 27 H 1.08994 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47302 * 300.00071 * 1 2 3 29 29 H 1.08998 * 109.47302 * 239.99929 * 2 1 3 30 30 H 1.09001 * 109.47377 * 119.99536 * 2 1 3 31 31 H 1.00904 * 110.99852 * 299.99189 * 8 6 4 32 32 H 1.00900 * 111.00340 * 63.94960 * 8 6 4 33 33 H 1.08995 * 109.62590 * 350.86768 * 12 11 9 34 34 H 1.09001 * 109.62973 * 111.45087 * 12 11 9 35 35 H 1.08998 * 109.49282 * 66.12711 * 13 12 11 36 36 H 1.09001 * 109.48895 * 186.20865 * 13 12 11 37 37 H 1.09008 * 109.46656 * 185.70064 * 15 14 13 38 38 H 1.09002 * 109.47174 * 305.69787 * 15 14 13 39 39 H 0.97003 * 119.99505 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.49314 * 176.93241 * 24 14 13 41 41 H 1.09000 * 109.49217 * 56.84795 * 24 14 13 42 42 H 1.08997 * 109.63136 * 248.55193 * 25 11 9 43 43 H 1.09010 * 109.62363 * 9.13571 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.3324 3.5743 -0.6595 8 7 5.3107 2.8927 -0.4721 9 6 3.8842 3.4956 1.4005 10 8 4.8862 3.4856 2.0836 11 7 2.7380 4.0057 1.8928 12 6 2.6806 4.5559 3.2557 13 6 1.4975 3.9156 3.9897 14 7 0.2758 4.0973 3.1945 15 6 -0.9086 3.6506 3.9399 16 6 -1.1149 4.5429 5.1367 17 1 -0.4345 5.3603 5.3245 18 6 -2.1730 4.3164 5.9913 19 7 -3.0018 3.3213 5.7622 20 14 -2.4291 5.4229 7.4744 21 1 -1.3676 6.4609 7.5067 22 1 -3.7585 6.0778 7.3796 23 1 -2.3651 4.6099 8.7154 24 6 0.3745 3.4080 1.9009 25 6 1.5116 4.0281 1.0812 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 5.8770 2.3081 0.1243 32 1 5.3563 2.5826 -1.4312 33 1 3.6065 4.3257 3.7827 34 1 2.5414 5.6360 3.2090 35 1 1.6875 2.8510 4.1266 36 1 1.3726 4.3912 4.9624 37 1 -1.7850 3.7011 3.2936 38 1 -0.7619 2.6233 4.2736 39 1 -3.7459 3.1617 6.3637 40 1 -0.5651 3.5156 1.3589 41 1 0.5801 2.3506 2.0670 42 1 1.2602 5.0574 0.8258 43 1 1.6647 3.4487 0.1706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224183372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:40 Heat of formation + Delta-G solvation = -129.162814 kcal Electronic energy + Delta-G solvation = -25926.568793 eV Core-core repulsion = 22199.192560 eV Total energy + Delta-G solvation = -3727.376233 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.27619 -40.92254 -39.15689 -38.00496 -36.07193 -35.43652 -34.38104 -32.70065 -32.20523 -30.26223 -28.43772 -27.13154 -24.92868 -24.26136 -23.80581 -22.94643 -21.76192 -20.14240 -19.27313 -18.91400 -18.45697 -18.10670 -17.59480 -17.10945 -16.71308 -16.23508 -15.98436 -15.90613 -15.49406 -15.29235 -15.23747 -15.10686 -14.70753 -14.29254 -14.12762 -13.75962 -13.56949 -13.44803 -13.06247 -13.03411 -12.74753 -12.59879 -12.56742 -12.33390 -12.26500 -12.17242 -12.13418 -11.74047 -11.63072 -11.33910 -11.07395 -10.60859 -10.25940 -9.85432 -9.04567 -8.19662 -6.28720 0.60363 1.12474 1.42431 1.44003 1.56497 1.60391 1.83643 2.41621 3.12058 3.13631 3.18379 3.26585 3.49009 3.79963 3.94182 3.94374 3.99620 4.05681 4.25096 4.27063 4.29619 4.44886 4.57603 4.71708 4.76250 4.86154 4.89547 4.93962 5.03344 5.07654 5.17060 5.24391 5.32396 5.38429 5.59195 5.66156 6.04865 6.15128 6.15597 6.30707 6.37830 6.60239 6.86245 6.87356 7.41168 8.91532 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.004227 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.451425 B = 6623.258076 C = 7671.336780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.347 6.347 4 C 0.437 3.563 5 O -0.525 6.525 6 C 0.091 3.909 7 H 0.176 0.824 8 N -0.795 5.795 9 C 0.524 3.476 10 O -0.558 6.558 11 N -0.599 5.599 12 C 0.126 3.874 13 C 0.057 3.943 14 N -0.537 5.537 15 C 0.210 3.790 16 C -0.521 4.521 17 H 0.066 0.934 18 C 0.004 3.996 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.283 1.283 24 C 0.044 3.956 25 C 0.115 3.885 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.357 0.643 32 H 0.369 0.631 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.005 0.995 36 H 0.082 0.918 37 H 0.013 0.987 38 H -0.043 1.043 39 H 0.263 0.737 40 H 0.090 0.910 41 H 0.019 0.981 42 H 0.098 0.902 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.177 -2.270 -16.483 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 O -0.262 6.262 4 C 0.277 3.723 5 O -0.414 6.414 6 C -0.027 4.027 7 H 0.193 0.807 8 N -0.328 5.328 9 C 0.310 3.690 10 O -0.436 6.436 11 N -0.332 5.332 12 C 0.003 3.997 13 C -0.072 4.072 14 N -0.262 5.262 15 C 0.084 3.916 16 C -0.560 4.560 17 H 0.084 0.916 18 C -0.194 4.194 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.209 1.209 24 C -0.084 4.084 25 C -0.007 4.007 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.172 0.828 32 H 0.186 0.814 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.023 0.977 36 H 0.100 0.900 37 H 0.031 0.969 38 H -0.025 1.025 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.037 0.963 42 H 0.117 0.883 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.700 -1.389 -16.030 18.788 hybrid contribution -0.617 -2.069 1.212 2.476 sum 9.083 -3.458 -14.818 17.721 Atomic orbital electron populations 1.21840 0.90800 1.04269 1.03706 1.23268 0.96751 0.79093 1.02420 1.86568 1.23150 1.33751 1.82719 1.25053 0.81635 0.93560 0.72032 1.90678 1.61131 1.43441 1.46150 1.21400 0.93733 0.90452 0.97089 0.80706 1.58872 1.03969 1.60918 1.09063 1.20069 0.82938 0.78201 0.87801 1.90697 1.34668 1.58035 1.60175 1.48269 1.10085 1.59013 1.15853 1.21728 0.97774 0.98904 0.81293 1.22259 0.89812 0.97155 0.97974 1.62027 1.02685 1.57265 1.04185 1.19356 0.87567 0.92120 0.92535 1.21508 1.11489 1.14130 1.08843 0.91610 1.25848 0.95605 0.96841 1.01121 1.70081 1.16589 1.31468 1.39309 0.85392 0.78287 0.78762 0.78536 1.18584 1.20444 1.20904 1.22447 0.99623 0.95076 0.91285 1.22207 0.81455 1.03464 0.93590 0.89792 0.88506 0.92976 0.89729 0.92819 0.82818 0.81384 0.89540 0.89089 0.97682 0.90004 0.96886 1.02539 0.92781 0.89138 0.96270 0.88341 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 10.29 71.98 0.74 -1.69 16 2 C 0.06 1.12 6.19 71.98 0.45 1.56 16 3 O -0.35 -7.29 7.80 -51.39 -0.40 -7.69 16 4 C 0.44 10.04 7.11 71.24 0.51 10.54 16 5 O -0.53 -14.65 16.00 21.95 0.35 -14.30 16 6 C 0.09 1.83 2.85 43.42 0.12 1.95 16 7 H 0.18 2.20 6.87 -2.39 -0.02 2.18 16 8 N -0.79 -15.08 8.74 -174.95 -1.53 -16.61 16 9 C 0.52 14.66 6.94 87.66 0.61 15.26 16 10 O -0.56 -19.62 15.70 -3.05 -0.05 -19.67 16 11 N -0.60 -16.42 3.01 -817.84 -2.46 -18.88 16 12 C 0.13 3.88 6.60 86.35 0.57 4.45 16 13 C 0.06 2.16 5.46 86.39 0.47 2.64 16 14 N -0.54 -21.43 4.62 -899.68 -4.16 -25.59 16 15 C 0.21 10.65 4.72 85.56 0.40 11.05 16 16 C -0.52 -28.34 8.41 25.60 0.22 -28.12 16 17 H 0.07 3.49 7.13 -2.91 -0.02 3.47 16 18 C 0.00 0.22 5.46 84.66 0.46 0.68 16 19 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 20 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 C 0.04 1.38 5.62 86.40 0.49 1.87 16 25 C 0.11 2.63 5.90 86.36 0.51 3.14 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.09 8.05 -2.39 -0.02 1.07 16 29 H 0.08 1.38 8.13 -2.39 -0.02 1.36 16 30 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 31 H 0.36 8.10 8.17 -89.69 -0.73 7.37 16 32 H 0.37 4.82 9.06 -89.69 -0.81 4.01 16 33 H 0.09 2.74 7.06 -2.39 -0.02 2.73 16 34 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.08 3.35 6.67 -2.39 -0.02 3.33 16 37 H 0.01 0.70 7.97 -2.38 -0.02 0.68 16 38 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 39 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.09 2.66 7.99 -2.39 -0.02 2.64 16 41 H 0.02 0.64 7.97 -2.39 -0.02 0.62 16 42 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.12 2.00 3.92 -2.38 -0.01 2.00 16 Total: -1.00 -70.46 349.83 -0.90 -71.35 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -0.51 Total: 17.24 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 5.54 Total: 23.33 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -7.86 Total: -115.51 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.10 Total: -41.65 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -70.46 -0.90 -71.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224183372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.809 kcal (2) G-P(sol) polarization free energy of solvation -70.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds