Wall clock time and date at job start Tue Mar 31 2020 04:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46803 * 2 1 4 4 N 1.46505 * 109.46951 * 119.99829 * 2 1 3 5 5 C 1.34770 * 120.00039 * 274.72225 * 4 2 1 6 6 O 1.21584 * 120.00461 * 0.28113 * 5 4 2 7 7 N 1.34782 * 119.99895 * 180.27598 * 5 4 2 8 8 C 1.46503 * 119.99837 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46899 * 180.02562 * 8 7 5 10 10 C 1.50704 * 109.46839 * 180.02562 * 9 8 7 11 11 H 1.07993 * 120.00211 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99762 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00092 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00152 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47310 * 89.99439 * 14 12 10 16 16 H 1.48508 * 109.47391 * 209.99879 * 14 12 10 17 17 H 1.48501 * 109.47106 * 329.99536 * 14 12 10 18 18 C 1.52997 * 109.47183 * 239.99753 * 2 1 3 19 19 H 1.08999 * 109.47670 * 306.10470 * 18 2 1 20 20 C 1.53005 * 109.46820 * 66.10361 * 18 2 1 21 21 N 1.46902 * 109.47403 * 186.10197 * 18 2 1 22 22 C 1.47021 * 110.99876 * 294.77703 * 21 18 2 23 23 C 1.53091 * 109.25522 * 177.60362 * 22 21 18 24 24 O 1.43021 * 109.26136 * 56.84800 * 23 22 21 25 25 C 1.43016 * 113.73927 * 301.33101 * 24 23 22 26 26 C 1.47010 * 111.00104 * 171.13950 * 21 18 2 27 27 H 1.09000 * 109.46760 * 174.26219 * 1 2 3 28 28 H 1.09002 * 109.47442 * 294.25804 * 1 2 3 29 29 H 1.09003 * 109.47334 * 54.25886 * 1 2 3 30 30 H 0.96999 * 119.99497 * 95.00346 * 4 2 1 31 31 H 0.96999 * 119.99701 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.47239 * 300.00780 * 8 7 5 33 33 H 1.09000 * 109.46741 * 60.00546 * 8 7 5 34 34 H 1.09000 * 109.46929 * 300.00114 * 9 8 7 35 35 H 1.09001 * 109.46642 * 60.00281 * 9 8 7 36 36 H 0.97005 * 120.00191 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.46895 * 179.97438 * 20 18 2 38 38 H 1.08995 * 109.47445 * 300.00159 * 20 18 2 39 39 H 1.09005 * 109.46891 * 60.00100 * 20 18 2 40 40 H 1.08999 * 109.50360 * 297.54117 * 22 21 18 41 41 H 1.08999 * 109.50846 * 57.66804 * 22 21 18 42 42 H 1.09004 * 109.51332 * 296.91416 * 23 22 21 43 43 H 1.09006 * 109.54449 * 176.80405 * 23 22 21 44 44 H 1.09000 * 109.50498 * 298.73295 * 25 24 23 45 45 H 1.08997 * 109.54597 * 178.62322 * 25 24 23 46 46 H 1.08997 * 109.50815 * 302.32720 * 26 21 18 47 47 H 1.08999 * 109.50714 * 62.46060 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3558 6 8 1.8632 1.1628 2.4104 7 7 2.6068 -0.6509 3.4549 8 6 2.7530 0.0816 4.7152 9 6 3.2831 -0.8632 5.7956 10 6 3.4329 -0.1099 7.0922 11 1 3.1762 0.9380 7.1407 12 6 3.8988 -0.7582 8.2163 13 7 4.2119 -2.0342 8.1571 14 14 4.0838 0.1753 9.8236 15 1 2.8199 0.0833 10.5978 16 1 5.1930 -0.4159 10.6146 17 1 4.3857 1.6006 9.5363 18 6 2.0400 -0.7213 -1.2492 19 1 1.5903 -1.7126 -1.3056 20 6 1.6591 0.0831 -2.4937 21 7 3.5016 -0.8501 -1.1779 22 6 4.1497 0.4687 -1.2257 23 6 5.6642 0.2922 -1.0887 24 8 6.1330 -0.5792 -2.1214 25 6 5.5231 -1.8727 -2.1042 26 6 4.0070 -1.7181 -2.2513 27 1 -0.3633 -1.0225 -0.1027 28 1 -0.3634 0.4222 0.9369 29 1 -0.3634 0.6003 -0.8341 30 1 2.2490 -1.6317 1.1526 31 1 2.8378 -1.5920 3.4112 32 1 3.4536 0.9052 4.5776 33 1 1.7839 0.4760 5.0206 34 1 2.5828 -1.6871 5.9332 35 1 4.2523 -1.2574 5.4898 36 1 4.5393 -2.4905 8.9481 37 1 2.0228 -0.4305 -3.3837 38 1 0.5746 0.1787 -2.5467 39 1 2.1089 1.0744 -2.4374 40 1 3.9239 0.9509 -2.1767 41 1 3.7797 1.0860 -0.4070 42 1 5.8938 -0.1409 -0.1151 43 1 6.1541 1.2617 -1.1804 44 1 5.7484 -2.3687 -1.1601 45 1 5.9100 -2.4693 -2.9302 46 1 3.5329 -2.6971 -2.1814 47 1 3.7790 -1.2709 -3.2188 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343764147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:22 Heat of formation + Delta-G solvation = -79.334203 kcal Electronic energy + Delta-G solvation = -25330.690081 eV Core-core repulsion = 21741.307673 eV Total energy + Delta-G solvation = -3589.382407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41080 -39.32811 -37.39091 -34.97481 -34.26869 -32.83046 -31.76901 -31.41359 -29.60321 -28.60577 -26.92776 -24.91177 -24.38590 -23.83362 -21.41075 -20.84660 -20.33569 -19.76058 -17.90765 -16.88996 -16.61345 -16.30432 -15.98787 -15.41988 -15.15831 -15.10796 -14.93988 -14.49286 -14.29304 -14.26129 -13.78092 -13.31115 -13.26619 -12.95199 -12.71660 -12.52839 -12.24107 -12.17917 -11.91487 -11.78278 -11.75385 -11.40070 -11.14292 -11.00271 -10.82125 -10.61886 -10.59529 -10.26336 -9.89185 -9.83284 -9.49985 -9.21619 -8.87234 -8.61386 -8.43928 -8.15081 -6.05949 -4.08338 3.11684 3.31817 3.37828 3.42062 3.45334 3.66057 3.72663 4.35203 4.43006 4.58827 4.66266 4.75512 4.85862 4.88510 4.94685 4.96548 5.07344 5.18344 5.24172 5.30385 5.31126 5.31878 5.42676 5.49092 5.57414 5.61472 5.67047 5.72559 5.81060 5.96317 6.15334 6.37838 6.45884 6.63270 6.68893 6.81155 6.86415 6.91635 7.10510 7.39006 7.63246 7.68498 7.93815 8.31032 8.57010 8.97230 9.12979 9.56208 11.05723 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.003033 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.673903 B = 9228.826649 C =10123.579527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.172 3.828 3 H 0.085 0.915 4 N -0.735 5.735 5 C 0.700 3.300 6 O -0.604 6.604 7 N -0.739 5.739 8 C 0.142 3.858 9 C 0.013 3.987 10 C -0.520 4.520 11 H 0.059 0.941 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.072 3.928 19 H 0.088 0.912 20 C -0.185 4.185 21 N -0.523 5.523 22 C 0.014 3.986 23 C 0.064 3.936 24 O -0.388 6.388 25 C 0.063 3.937 26 C 0.016 3.984 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.396 0.604 31 H 0.392 0.608 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.022 0.978 36 H 0.261 0.739 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -1.202 -24.773 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.066 3.934 3 H 0.103 0.897 4 N -0.390 5.390 5 C 0.400 3.600 6 O -0.484 6.484 7 N -0.393 5.393 8 C 0.019 3.981 9 C -0.024 4.024 10 C -0.558 4.558 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.037 4.037 19 H 0.107 0.893 20 C -0.245 4.245 21 N -0.248 5.248 22 C -0.114 4.114 23 C -0.013 4.013 24 O -0.306 6.306 25 C -0.014 4.014 26 C -0.112 4.112 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.229 0.771 31 H 0.225 0.775 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.115 0.885 44 H 0.079 0.921 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.569 -0.404 -24.253 24.392 hybrid contribution -0.138 -0.239 0.310 0.416 sum -2.707 -0.643 -23.942 24.104 Atomic orbital electron populations 1.22242 0.95407 1.01829 1.02807 1.20668 0.93253 0.96962 0.82559 0.89732 1.44933 1.72098 1.13536 1.08438 1.16053 0.78449 0.85103 0.80397 1.90867 1.58097 1.14624 1.84814 1.45508 1.69741 1.13902 1.10125 1.21539 1.00163 0.95492 0.80917 1.19319 0.96520 0.94630 0.91970 1.21062 1.43972 0.96637 0.94165 0.92260 1.24993 0.95253 0.94929 0.99150 1.69961 1.44601 1.09227 1.29590 0.86519 0.77729 0.80093 0.83248 1.20596 1.21208 1.19722 1.22068 0.87625 0.99912 0.94055 0.89343 1.22452 1.02809 1.01163 0.98036 1.62382 1.04438 1.12651 1.45291 1.22855 0.95529 0.91192 1.01819 1.22676 0.92655 0.94578 0.91433 1.87973 1.64932 1.24425 1.53280 1.22645 0.91040 0.85279 1.02414 1.22806 0.96791 0.98235 0.93358 0.92614 0.91447 0.91950 0.77083 0.77479 0.92969 0.92976 0.96044 0.95999 0.92907 0.92210 0.91225 0.91837 0.93578 0.89091 0.91973 0.88510 0.92119 0.88697 0.89722 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.12 37.16 0.34 -1.31 16 2 C 0.17 1.87 1.77 -67.93 -0.12 1.75 16 3 H 0.08 1.11 6.21 -51.93 -0.32 0.79 16 4 N -0.73 -9.32 4.78 -58.67 -0.28 -9.60 16 5 C 0.70 12.24 8.53 -86.92 -0.74 11.50 16 6 O -0.60 -12.89 16.00 5.29 0.08 -12.81 16 7 N -0.74 -13.31 5.56 -65.22 -0.36 -13.67 16 8 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 14 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.07 0.59 1.95 -67.71 -0.13 0.46 16 19 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 20 C -0.19 -1.31 8.22 37.16 0.31 -1.00 16 21 N -0.52 -4.74 4.38 -226.33 -0.99 -5.73 16 22 C 0.01 0.14 4.81 -3.71 -0.02 0.12 16 23 C 0.06 0.65 7.01 37.20 0.26 0.91 16 24 O -0.39 -4.24 10.83 -35.23 -0.38 -4.63 16 25 C 0.06 0.54 7.01 37.21 0.26 0.80 16 26 C 0.02 0.13 5.37 -3.71 -0.02 0.11 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.52 6.88 -51.93 -0.36 0.16 16 30 H 0.40 4.28 8.62 -40.82 -0.35 3.93 16 31 H 0.39 6.19 8.49 -40.82 -0.35 5.84 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.06 0.40 6.70 -51.93 -0.35 0.05 16 38 H 0.07 0.44 6.73 -51.93 -0.35 0.09 16 39 H 0.06 0.49 6.39 -51.93 -0.33 0.16 16 40 H 0.05 0.44 6.37 -51.93 -0.33 0.10 16 41 H 0.09 1.05 6.48 -51.93 -0.34 0.72 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 47 H 0.04 0.34 6.68 -51.93 -0.35 -0.01 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -32.51 367.94 -9.14 -41.66 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -8.03 Total: 5.04 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.44 Total: 3.26 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.90 Total: -54.60 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.30 Total: -17.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.51 -9.14 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343764147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.677 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds