Wall clock time and date at job start Tue Mar 31 2020 04:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46803 * 2 1 4 4 N 1.46505 * 109.46951 * 119.99829 * 2 1 3 5 5 C 1.34770 * 120.00039 * 274.72225 * 4 2 1 6 6 O 1.21584 * 120.00461 * 0.28113 * 5 4 2 7 7 N 1.34782 * 119.99895 * 180.27598 * 5 4 2 8 8 C 1.46503 * 119.99837 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46899 * 180.02562 * 8 7 5 10 10 C 1.50704 * 109.46839 * 180.02562 * 9 8 7 11 11 H 1.07993 * 120.00211 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99762 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00092 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00152 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47310 * 89.99439 * 14 12 10 16 16 H 1.48508 * 109.47391 * 209.99879 * 14 12 10 17 17 H 1.48501 * 109.47106 * 329.99536 * 14 12 10 18 18 C 1.52997 * 109.47183 * 239.99753 * 2 1 3 19 19 H 1.08999 * 109.47670 * 306.10470 * 18 2 1 20 20 C 1.53005 * 109.46820 * 66.10361 * 18 2 1 21 21 N 1.46902 * 109.47403 * 186.10197 * 18 2 1 22 22 C 1.47021 * 110.99876 * 294.77703 * 21 18 2 23 23 C 1.53091 * 109.25522 * 177.60362 * 22 21 18 24 24 O 1.43021 * 109.26136 * 56.84800 * 23 22 21 25 25 C 1.43016 * 113.73927 * 301.33101 * 24 23 22 26 26 C 1.47010 * 111.00104 * 171.13950 * 21 18 2 27 27 H 1.09000 * 109.46760 * 174.26219 * 1 2 3 28 28 H 1.09002 * 109.47442 * 294.25804 * 1 2 3 29 29 H 1.09003 * 109.47334 * 54.25886 * 1 2 3 30 30 H 0.96999 * 119.99497 * 95.00346 * 4 2 1 31 31 H 0.96999 * 119.99701 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.47239 * 300.00780 * 8 7 5 33 33 H 1.09000 * 109.46741 * 60.00546 * 8 7 5 34 34 H 1.09000 * 109.46929 * 300.00114 * 9 8 7 35 35 H 1.09001 * 109.46642 * 60.00281 * 9 8 7 36 36 H 0.97005 * 120.00191 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.46895 * 179.97438 * 20 18 2 38 38 H 1.08995 * 109.47445 * 300.00159 * 20 18 2 39 39 H 1.09005 * 109.46891 * 60.00100 * 20 18 2 40 40 H 1.08999 * 109.50360 * 297.54117 * 22 21 18 41 41 H 1.08999 * 109.50846 * 57.66804 * 22 21 18 42 42 H 1.09004 * 109.51332 * 296.91416 * 23 22 21 43 43 H 1.09006 * 109.54449 * 176.80405 * 23 22 21 44 44 H 1.09000 * 109.50498 * 298.73295 * 25 24 23 45 45 H 1.08997 * 109.54597 * 178.62322 * 25 24 23 46 46 H 1.08997 * 109.50815 * 302.32720 * 26 21 18 47 47 H 1.08999 * 109.50714 * 62.46060 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3558 6 8 1.8632 1.1628 2.4104 7 7 2.6068 -0.6509 3.4549 8 6 2.7530 0.0816 4.7152 9 6 3.2831 -0.8632 5.7956 10 6 3.4329 -0.1099 7.0922 11 1 3.1762 0.9380 7.1407 12 6 3.8988 -0.7582 8.2163 13 7 4.2119 -2.0342 8.1571 14 14 4.0838 0.1753 9.8236 15 1 2.8199 0.0833 10.5978 16 1 5.1930 -0.4159 10.6146 17 1 4.3857 1.6006 9.5363 18 6 2.0400 -0.7213 -1.2492 19 1 1.5903 -1.7126 -1.3056 20 6 1.6591 0.0831 -2.4937 21 7 3.5016 -0.8501 -1.1779 22 6 4.1497 0.4687 -1.2257 23 6 5.6642 0.2922 -1.0887 24 8 6.1330 -0.5792 -2.1214 25 6 5.5231 -1.8727 -2.1042 26 6 4.0070 -1.7181 -2.2513 27 1 -0.3633 -1.0225 -0.1027 28 1 -0.3634 0.4222 0.9369 29 1 -0.3634 0.6003 -0.8341 30 1 2.2490 -1.6317 1.1526 31 1 2.8378 -1.5920 3.4112 32 1 3.4536 0.9052 4.5776 33 1 1.7839 0.4760 5.0206 34 1 2.5828 -1.6871 5.9332 35 1 4.2523 -1.2574 5.4898 36 1 4.5393 -2.4905 8.9481 37 1 2.0228 -0.4305 -3.3837 38 1 0.5746 0.1787 -2.5467 39 1 2.1089 1.0744 -2.4374 40 1 3.9239 0.9509 -2.1767 41 1 3.7797 1.0860 -0.4070 42 1 5.8938 -0.1409 -0.1151 43 1 6.1541 1.2617 -1.1804 44 1 5.7484 -2.3687 -1.1601 45 1 5.9100 -2.4693 -2.9302 46 1 3.5329 -2.6971 -2.1814 47 1 3.7790 -1.2709 -3.2188 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343764147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:21 Heat of formation + Delta-G solvation = -104.312042 kcal Electronic energy + Delta-G solvation = -25331.773201 eV Core-core repulsion = 21741.307673 eV Total energy + Delta-G solvation = -3590.465528 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35394 -40.50239 -38.30823 -36.56248 -35.46310 -34.78565 -32.86761 -32.14094 -31.20388 -29.62656 -27.65900 -26.66277 -25.24843 -24.78284 -22.95859 -22.08724 -21.66421 -20.55872 -19.25314 -18.40506 -17.67457 -17.54722 -16.96468 -16.52912 -16.48256 -16.08800 -15.98106 -15.89059 -15.49792 -15.20763 -15.07973 -14.81011 -14.30759 -14.28474 -13.71600 -13.61362 -13.21592 -13.18705 -12.99284 -12.88916 -12.70338 -12.56108 -12.50536 -12.47078 -12.21075 -12.10635 -11.64848 -11.54958 -11.47050 -11.36579 -11.11937 -10.66719 -10.59018 -10.22617 -9.61465 -9.30647 -8.22791 -6.33039 1.42442 1.43135 1.54588 1.85943 2.28676 2.42493 2.71457 2.94913 3.11886 3.47127 3.61351 3.90775 3.96912 4.11181 4.17833 4.24312 4.28206 4.37611 4.39697 4.46413 4.50987 4.54818 4.63281 4.65523 4.72968 4.81348 4.84240 4.88789 4.89650 4.97218 5.01300 5.04539 5.25352 5.33205 5.36203 5.56076 5.61495 5.68320 5.81530 5.96116 6.04041 6.16127 6.17264 6.19770 6.80168 7.24550 7.36431 7.72264 8.89149 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.003033 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.673903 B = 9228.826649 C =10123.579527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.170 3.830 3 H 0.060 0.940 4 N -0.714 5.714 5 C 0.699 3.301 6 O -0.644 6.644 7 N -0.736 5.736 8 C 0.163 3.837 9 C 0.025 3.975 10 C -0.546 4.546 11 H 0.058 0.942 12 C 0.007 3.993 13 N -0.926 5.926 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.267 1.267 18 C 0.081 3.919 19 H 0.109 0.891 20 C -0.181 4.181 21 N -0.535 5.535 22 C 0.022 3.978 23 C 0.064 3.936 24 O -0.403 6.403 25 C 0.057 3.943 26 C 0.021 3.979 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.082 0.918 30 H 0.408 0.592 31 H 0.405 0.595 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.008 0.992 35 H 0.007 0.993 36 H 0.266 0.734 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.053 0.947 45 H 0.116 0.884 46 H 0.105 0.895 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.201 -1.928 -26.102 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.064 3.936 3 H 0.078 0.922 4 N -0.369 5.369 5 C 0.399 3.601 6 O -0.527 6.527 7 N -0.390 5.390 8 C 0.039 3.961 9 C -0.012 4.012 10 C -0.585 4.585 11 H 0.076 0.924 12 C -0.192 4.192 13 N -0.566 5.566 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.027 4.027 19 H 0.127 0.873 20 C -0.240 4.240 21 N -0.260 5.260 22 C -0.107 4.107 23 C -0.013 4.013 24 O -0.322 6.322 25 C -0.020 4.020 26 C -0.107 4.107 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.244 0.756 31 H 0.240 0.760 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.122 0.878 44 H 0.071 0.929 45 H 0.134 0.866 46 H 0.123 0.877 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.125 -1.176 -25.635 25.852 hybrid contribution 0.039 -0.054 0.651 0.654 sum -3.086 -1.231 -24.984 25.204 Atomic orbital electron populations 1.22181 0.94395 1.03181 1.01914 1.20844 0.93993 0.96000 0.82770 0.92232 1.44804 1.70674 1.13947 1.07435 1.16153 0.78099 0.84658 0.81165 1.90841 1.59745 1.16540 1.85531 1.45205 1.70205 1.14310 1.09296 1.21004 0.98862 0.94507 0.81745 1.19113 0.95403 0.94445 0.92275 1.21467 1.44367 0.96970 0.95663 0.92372 1.25867 0.94683 0.95833 1.02775 1.70063 1.45095 1.10646 1.30799 0.85446 0.78027 0.78864 0.78717 1.19731 1.20480 1.19090 1.22020 0.87148 1.00705 0.92872 0.87302 1.22410 1.03561 1.00441 0.97546 1.62361 1.04932 1.12249 1.46413 1.22693 0.95163 0.91626 1.01189 1.22651 0.93135 0.94852 0.90652 1.87952 1.65604 1.25453 1.53219 1.22849 0.91812 0.84377 1.02934 1.22832 0.96134 0.98810 0.92928 0.90671 0.94715 0.89885 0.75571 0.76039 0.94208 0.94088 0.97371 0.97442 0.92558 0.91103 0.90039 0.92884 0.92956 0.91261 0.93600 0.87843 0.92884 0.86635 0.87696 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.12 71.98 0.66 -2.28 16 2 C 0.17 3.50 1.77 44.99 0.08 3.58 16 3 H 0.06 1.58 6.21 -2.39 -0.01 1.56 16 4 N -0.71 -17.56 4.78 -457.81 -2.19 -19.75 16 5 C 0.70 24.67 8.53 179.05 1.53 26.20 16 6 O -0.64 -28.17 16.00 -3.98 -0.06 -28.24 16 7 N -0.74 -26.76 5.56 -478.53 -2.66 -29.42 16 8 C 0.16 7.33 5.61 86.38 0.48 7.81 16 9 C 0.03 1.30 5.09 29.85 0.15 1.45 16 10 C -0.55 -31.05 9.11 25.60 0.23 -30.81 16 11 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 12 C 0.01 0.40 5.46 84.65 0.46 0.87 16 13 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 14 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 C 0.08 1.13 1.95 44.92 0.09 1.22 16 19 H 0.11 1.16 8.06 -2.39 -0.02 1.14 16 20 C -0.18 -2.06 8.22 71.98 0.59 -1.47 16 21 N -0.53 -8.77 4.38 -869.97 -3.81 -12.59 16 22 C 0.02 0.42 4.81 86.31 0.42 0.83 16 23 C 0.06 1.32 7.01 72.01 0.50 1.83 16 24 O -0.40 -8.49 10.83 -148.98 -1.61 -10.10 16 25 C 0.06 0.87 7.01 72.02 0.50 1.37 16 26 C 0.02 0.26 5.37 86.32 0.46 0.73 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 1.20 6.88 -2.39 -0.02 1.18 16 30 H 0.41 8.14 8.62 -92.71 -0.80 7.35 16 31 H 0.40 12.69 8.49 -92.71 -0.79 11.90 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 37 H 0.07 0.69 6.70 -2.39 -0.02 0.68 16 38 H 0.08 0.75 6.73 -2.39 -0.02 0.74 16 39 H 0.05 0.73 6.39 -2.38 -0.02 0.72 16 40 H 0.05 0.94 6.37 -2.39 -0.02 0.93 16 41 H 0.07 1.65 6.48 -2.39 -0.02 1.64 16 42 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 44 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.10 0.94 8.10 -2.39 -0.02 0.92 16 47 H 0.05 0.60 6.68 -2.39 -0.02 0.58 16 Total: -1.00 -70.75 367.94 -2.48 -73.23 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.62 Total: 23.94 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 6.16 Total: 11.32 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -8.38 Total: -116.27 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -1.68 Total: -38.34 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.75 -2.48 -73.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343764147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.078 kcal (2) G-P(sol) polarization free energy of solvation -70.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds