Wall clock time and date at job start Tue Mar 31 2020 03:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99874 * 2 1 4 4 H 1.09002 * 109.47711 * 329.99964 * 3 2 1 5 5 C 1.53006 * 109.47532 * 89.99923 * 3 2 1 6 6 C 1.52997 * 109.47445 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47092 * 300.00075 * 6 5 3 8 8 C 1.53001 * 109.46963 * 60.00194 * 7 6 5 9 9 C 1.53000 * 109.46886 * 299.99499 * 8 7 6 10 10 H 1.09002 * 109.47398 * 300.00496 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 12 12 C 1.34781 * 119.99874 * 85.00543 * 11 9 8 13 13 O 1.21587 * 119.99893 * 359.97438 * 12 11 9 14 14 N 1.34783 * 120.00017 * 180.02562 * 12 11 9 15 15 C 1.46498 * 119.99854 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.46946 * 179.97438 * 15 14 12 17 17 O 1.21292 * 120.00110 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00104 * 179.97438 * 16 15 14 19 19 C 1.37090 * 120.00001 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00528 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99819 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00341 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99996 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47095 * 90.00258 * 23 21 19 25 25 H 1.48501 * 109.47423 * 210.00114 * 23 21 19 26 26 H 1.48498 * 109.47460 * 330.00105 * 23 21 19 27 27 H 1.09002 * 109.47082 * 59.99890 * 1 2 3 28 28 H 1.08993 * 109.47085 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47058 * 300.00654 * 1 2 3 30 30 H 1.09001 * 109.46726 * 299.99949 * 5 3 2 31 31 H 1.09002 * 109.46589 * 59.99354 * 5 3 2 32 32 H 1.09002 * 109.47045 * 59.99942 * 6 5 3 33 33 H 1.09000 * 109.47140 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.46497 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47067 * 299.99853 * 7 6 5 36 36 H 1.09001 * 109.46652 * 179.97438 * 8 7 6 37 37 H 1.08992 * 109.47514 * 59.99933 * 8 7 6 38 38 H 0.97002 * 120.00410 * 264.99761 * 11 9 8 39 39 H 0.96997 * 119.99860 * 359.97438 * 14 12 11 40 40 H 1.08994 * 109.47400 * 300.00192 * 15 14 12 41 41 H 1.09008 * 109.47067 * 59.99683 * 15 14 12 42 42 H 0.97002 * 119.99712 * 0.02562 * 18 16 15 43 43 H 0.97000 * 120.00243 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7715 1.4425 6 6 2.8405 3.1689 1.4425 7 6 4.1893 3.1261 0.7214 8 6 3.9818 2.6602 -0.7211 9 6 3.3590 1.2627 -0.7210 10 1 4.0239 0.5686 -0.2070 11 7 3.1609 0.8164 -2.1022 12 6 4.1709 0.2253 -2.7708 13 8 5.2466 0.0629 -2.2278 14 7 3.9889 -0.1849 -4.0418 15 6 5.0869 -0.8269 -4.7686 16 6 4.6268 -1.1874 -6.1576 17 8 3.4933 -0.9327 -6.5062 18 7 5.4750 -1.7920 -7.0128 19 6 5.0566 -2.1195 -8.2766 20 1 4.0473 -1.8927 -8.5871 21 6 5.9310 -2.7433 -9.1581 22 7 7.1589 -3.0198 -8.7803 23 14 5.3611 -3.1888 -10.8803 24 1 5.6346 -2.0560 -11.8008 25 1 6.0924 -4.3939 -11.3475 26 1 3.9032 -3.4708 -10.8619 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.2568 1.8016 1.9563 31 1 2.8829 1.0775 1.9563 32 1 2.1756 3.8631 0.9285 33 1 2.9879 3.5011 2.4701 34 1 4.6332 4.1217 0.7218 35 1 4.8542 2.4320 1.2354 36 1 4.9427 2.6302 -1.2349 37 1 3.3169 3.3543 -1.2350 38 1 2.3028 0.9462 -2.5356 39 1 3.1308 -0.0550 -4.4751 40 1 5.9312 -0.1405 -4.8319 41 1 5.3923 -1.7308 -4.2413 42 1 6.3816 -1.9954 -6.7341 43 1 7.7694 -3.4549 -9.3958 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345073470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:41 Heat of formation + Delta-G solvation = -129.687028 kcal Electronic energy + Delta-G solvation = -24372.487627 eV Core-core repulsion = 20645.088662 eV Total energy + Delta-G solvation = -3727.398964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31741 -39.07101 -38.06467 -36.65765 -34.39948 -34.07473 -33.56923 -31.34803 -30.43285 -29.55851 -27.24763 -26.56191 -24.45771 -22.84993 -22.38870 -20.55332 -20.27975 -19.53405 -18.33669 -17.94494 -17.00166 -16.55588 -15.62205 -15.51856 -15.36217 -15.14689 -14.76284 -14.55010 -14.28564 -14.02620 -13.89536 -13.81666 -13.49876 -13.42231 -12.93282 -12.70042 -12.13372 -12.03841 -11.89408 -11.60675 -11.48230 -11.38622 -11.11847 -11.09862 -10.95272 -10.59120 -10.44114 -10.29546 -10.02140 -9.73728 -9.60833 -9.04926 -8.58719 -8.52872 -8.06915 -6.48641 -3.90542 2.86161 3.13545 3.23644 3.29216 3.39755 3.49874 3.79065 4.10942 4.34936 4.38819 4.64322 4.66957 4.79136 4.89217 4.92185 4.95514 5.07681 5.09354 5.17492 5.19116 5.20239 5.40387 5.47272 5.60702 5.68239 5.72603 5.82064 5.85619 5.96998 6.05479 6.06642 6.11907 6.13003 6.61912 6.83122 6.93174 7.18039 7.48574 7.95533 8.32353 8.48671 8.88975 9.07607 9.42974 9.91058 10.68375 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.031018 B = 0.002568 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.475044 B =10901.007796 C =11450.142105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.376 6.376 3 C 0.082 3.918 4 H 0.064 0.936 5 C -0.137 4.137 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.129 4.129 9 C 0.172 3.828 10 H 0.095 0.905 11 N -0.739 5.739 12 C 0.708 3.292 13 O -0.598 6.598 14 N -0.725 5.725 15 C 0.129 3.871 16 C 0.430 3.570 17 O -0.598 6.598 18 N -0.550 5.550 19 C -0.304 4.304 20 H 0.105 0.895 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.933 3.067 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.269 1.269 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.394 0.606 39 H 0.406 0.594 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.616 11.053 19.482 24.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C 0.024 3.976 4 H 0.082 0.918 5 C -0.176 4.176 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.168 4.168 9 C 0.066 3.934 10 H 0.113 0.887 11 N -0.394 5.394 12 C 0.407 3.593 13 O -0.477 6.477 14 N -0.382 5.382 15 C 0.001 3.999 16 C 0.215 3.785 17 O -0.485 6.485 18 N -0.185 5.185 19 C -0.434 4.434 20 H 0.123 0.877 21 C -0.178 4.178 22 N -0.535 5.535 23 Si 0.760 3.240 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.227 0.773 39 H 0.243 0.757 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.083 10.764 19.595 24.131 hybrid contribution -0.684 -0.073 -1.140 1.332 sum -9.767 10.691 18.455 23.458 Atomic orbital electron populations 1.22805 0.81187 1.02910 0.99754 1.88014 1.19435 1.27053 1.94969 1.22442 0.94397 0.85029 0.95750 0.91766 1.22000 1.01751 0.97483 0.96345 1.21537 0.96939 0.96239 1.00892 1.21538 0.97171 1.01724 0.95300 1.21964 1.02141 0.95548 0.97166 1.20816 0.95307 0.96183 0.81126 0.88662 1.44947 1.14666 1.65365 1.14383 1.15822 0.84066 0.78250 0.81142 1.90892 1.25232 1.62951 1.68634 1.44761 1.17143 1.64089 1.12236 1.20766 0.89236 0.98352 0.91585 1.19785 0.86957 0.84987 0.86731 1.90486 1.20025 1.59913 1.78058 1.41788 1.13534 1.50937 1.12244 1.19720 0.99665 1.36093 0.87885 0.87724 1.25322 0.95086 0.96884 1.00475 1.69617 1.05153 1.41582 1.37194 0.85817 0.78894 0.77995 0.81332 1.20295 1.20813 1.19348 0.93988 0.89551 0.94239 0.91468 0.90623 0.91860 0.91433 0.91434 0.91365 0.90352 0.91763 0.77268 0.75705 0.90074 0.90059 0.77010 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.32 16 2 O -0.38 -4.06 10.21 -35.23 -0.36 -4.42 16 3 C 0.08 0.75 2.13 -26.73 -0.06 0.69 16 4 H 0.06 0.50 7.79 -51.93 -0.40 0.09 16 5 C -0.14 -1.02 5.54 -26.73 -0.15 -1.17 16 6 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 7 C -0.12 -0.93 5.92 -26.73 -0.16 -1.08 16 8 C -0.13 -1.28 5.49 -26.73 -0.15 -1.42 16 9 C 0.17 1.95 2.14 -67.93 -0.15 1.80 16 10 H 0.10 1.33 7.58 -51.93 -0.39 0.93 16 11 N -0.74 -9.55 4.95 -58.67 -0.29 -9.84 16 12 C 0.71 12.00 8.53 -86.91 -0.74 11.26 16 13 O -0.60 -12.02 16.01 5.29 0.08 -11.93 16 14 N -0.73 -12.69 5.53 -66.41 -0.37 -13.06 16 15 C 0.13 2.48 6.15 -5.20 -0.03 2.45 16 16 C 0.43 10.05 7.85 -10.99 -0.09 9.96 16 17 O -0.60 -15.51 15.24 5.55 0.08 -15.43 16 18 N -0.55 -13.85 5.29 -10.97 -0.06 -13.91 16 19 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 22 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 23 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 27 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.24 7.87 -51.93 -0.41 -0.17 16 30 H 0.07 0.43 7.87 -51.93 -0.41 0.03 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.39 4.28 8.62 -40.82 -0.35 3.93 16 39 H 0.41 6.91 7.45 -40.82 -0.30 6.60 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 42 H 0.40 9.61 7.90 -40.82 -0.32 9.29 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -32.43 356.87 -7.40 -39.83 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -6.75 Total: 16.17 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: -0.82 Total: 14.96 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.01 Total: -60.25 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.19 Total: -31.78 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.43 -7.40 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345073470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.858 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds